MPD: Phenotype measures mapped to MA:0002765, male germ cell

Phenotype measures associated with ontology term
MA:0002765 'male germ cell'

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year

Handel1:49	Handel1	sperm count	(none)	sperm count (n x 10⁶ per mouse) [n] sperm_count 12049	inbred	14	m	8-10wks	N=5	2010

Lazear1:2	Lazear1	sperm count	(none)	number of sperm per mL of semen (x 10⁶) [n/mL] sperm_count 63102	CC	10	m	15-22wks	N=2	2018

Lazear1:3	Lazear1	microscopy	(none)	percentage of sperm that are motile [%] sperm_motile 63103	CC	10	m	15-22wks	N=2	2018

Lazear1:4	Lazear1	microscopy	(none)	percentage of sperm that move in a consistent direction [%] sperm_processive 63104	CC	10	m	15-22wks	N=2	2018

Odet1:31	Odet1	sperm count	(none)	sperm count per mouse (x 10⁶) [n] sperm_per_mouse 53731	inbred w/CC8	8	m	10-66wks	N=21	2015

Odet1:32	Odet1	sperm count	(none)	sperm count per mg testis weight (x 10³) [n] sperm_per_testis 53732	inbred w/CC8	8	m	10-66wks	N=20	2015

Odet1:33	Odet1	sperm count	(none)	sperm count per seminiferous epithelium length (x 10³) [n] sperm_per_seminif 53733	inbred w/CC8	8	m	10-66wks	N=19	2015

Odet1:41	Odet1	histopathology	(none)	percentage of sperm with normal morphology [%] sperm_normal 53741	inbred w/CC8	8	m	10-66wks	N=14	2015

Odet1:42	Odet1	histopathology	(none)	percentage of sperm with abnormal head shape [%] sperm_abnormal_head 53742	inbred w/CC8	8	m	10-66wks	N=14	2015

Odet1:43	Odet1	histopathology	(none)	percentage of sperm with abnormal tail bending [%] sperm_abnormal_tail 53743	inbred w/CC8	8	m	10-66wks	N=14	2015

Odet1:44	Odet1	histopathology	(none)	percentage of sperm with broken tails [%] sperm_broken_tail 53744	inbred w/CC8	8	m	10-66wks	N=14	2015

Odet1:51	Odet1	metabolic panel	(none)	lactate production per 10⁸ sperm [µmole] sperm_lactate 53751	inbred w/CC8	8	m	10-66wks	N=8	2015

Odet2:8	Odet2	microscopy	(none)	percentage of sperm that are motile [%] sperm_motile 53808 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:15	Odet2	microscopy	(none)	percentage of motile sperm that are 'progressive' [%] sperm_prog 53815 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:21	Odet2	microscopy	(none)	percentage of motile sperm that are 'intermediate' [%] sperm_int 53821 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:28	Odet2	microscopy	(none)	percentage of motile sperm that are 'hyperactivated' [%] sperm_hyper 53828 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:35	Odet2	microscopy	(none)	percentage of motile sperm that are 'vigorous' [%] sperm_vigor 53835 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:41	Odet2	microscopy	(none)	percentage of motile sperm that are 'slow' [%] sperm_slow 53841 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:48	Odet2	microscopy	(none)	percentage of motile sperm that are 'weak' [%] sperm_weak 53848 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:55	Odet2	microscopy	(none)	sperm mean path velocity [µm/s] sperm_VAP 53855 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:61	Odet2	microscopy	(none)	sperm mean straight line velocity [µm/s] sperm_VSL 53861 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:68	Odet2	microscopy	(none)	sperm mean curvilinear velocity [µm/s] sperm_VCL 53868 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:75	Odet2	microscopy	(none)	sperm mean lateral head displacement (amplitude) [µm] sperm_ALH 53875 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:81	Odet2	microscopy	(none)	sperm mean cross beat frequency [Hz] sperm_BCF 53881 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:88	Odet2	microscopy	(none)	sperm mean straightness [ratio] sperm_STR 53888 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Odet2:94	Odet2	microscopy	(none)	sperm mean linearity [ratio] sperm_LIN 53894 min: 10 30 60 90 120	inbred w/CC8	8	m	10-66wks	N=13	2015

Payseur2:3	Payseur2	sperm count	(none)	sperm count per mL (x10⁶) [n] SpermDensity 64003	QTL population		m	10-11wks	N=312	2018

Shorter4:12	Shorter4	sperm count	(none)	sperm count per mouse (x 10⁶) [n] sperm_count 110104	CC	12	m	15-33wks	N=3	2019

Shorter4:13	Shorter4	sperm count	(none)	sperm count per mg testis weight (x 10³) [n/mg] sperm_adj 110105	CC	12	m	15-33wks	N=3	2019

Shorter4:14	Shorter4	microscopy	(none)	percentage of sperm that are motile [%] motile 110106 10 min 90 min	CC	12	m	15-33wks	N=3	2019

Shorter4:16	Shorter4	microscopy	(none)	percentage of motile sperm that are 'vigorous' [%] vigorous 110108 10 min 90 min	CC	12	m	15-33wks	N=3	2019

Shorter4:18	Shorter4	microscopy	(none)	percentage of motile sperm that are 'hyperactivated' [%] hyper 110110 10 min 90 min	CC	12	m	15-33wks	N=3	2019

Shorter4:20	Shorter4	microscopy	(none)	sperm mean curvilinear velocity [µm/s] VCL 110112 10 min 90 min	CC	12	m	15-33wks	N=3	2019

Shorter4:22	Shorter4	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110114	CC	12	m	15-33wks	N=3	2019

Shorter4:23	Shorter4	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110115	CC	12	m	15-33wks	N=3	2019

Shorter4:24	Shorter4	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110116	CC	12	m	15-33wks	N=3	2019

Shorter4:25	Shorter4	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110117	CC	12	m	15-33wks	N=3	2019

Shorter5:12	Shorter5	sperm count	(none)	sperm count per mouse (x 10⁶) [n] sperm_count 110129	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:13	Shorter5	sperm count	(none)	sperm count per mg testis weight (x 10³) [n/mg] sperm_adj 110130	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:14	Shorter5	microscopy	(none)	percentage of sperm that are motile [%] motile 110147 10 min 90 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:16	Shorter5	microscopy	(none)	percentage of motile sperm that are 'vigorous' [%] vigorous 110149 10 min 90 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:18	Shorter5	microscopy	(none)	percentage of motile sperm that are 'hyperactivated' [%] hyper 110151 10 min 90 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:20	Shorter5	microscopy	(none)	sperm mean curvilinear velocity [µm/s] VCL 110153 10 min 90 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:22	Shorter5	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110139	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:23	Shorter5	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110140	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:24	Shorter5	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110141	CC RIX	28	m	7-44wks	N=4	2019

Shorter5:25	Shorter5	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110142	CC RIX	28	m	7-44wks	N=4	2019

Shorter6:1	Shorter6	microscopy	(none)	percentage of sperm that are motile [%] sperm_motile 65601 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:6	Shorter6	microscopy	(none)	percentage of motile sperm that are 'vigorous' [%] sperm_vigor 65606 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:11	Shorter6	microscopy	(none)	percentage of motile sperm that are 'progressive' [%] sperm_prog 65611 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:16	Shorter6	microscopy	(none)	percentage of motile sperm that are 'hyperactivated' [%] sperm_hyper 65616 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:21	Shorter6	microscopy	(none)	percentage of motile sperm that are 'intermediate' [%] sperm_int 65621 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:26	Shorter6	microscopy	(none)	percentage of motile sperm that are 'slow' [%] sperm_slow 65626 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:31	Shorter6	microscopy	(none)	percentage of motile sperm that are 'weak' [%] sperm_weak 65631 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:36	Shorter6	microscopy	(none)	sperm mean path velocity [µm/s] sperm_VAP 65636 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:41	Shorter6	microscopy	(none)	sperm mean straight line velocity [µm/s] sperm_VSL 65641 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:46	Shorter6	microscopy	(none)	sperm mean curvilinear velocity [µm/s] sperm_VCL 65646 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:51	Shorter6	microscopy	(none)	sperm mean lateral head displacement (amplitude) [µm] sperm_ALH 65651 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:56	Shorter6	microscopy	(none)	sperm mean cross beat frequency [Hz] sperm_BCF 65656 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:61	Shorter6	microscopy	(none)	sperm mean straightness [ratio] sperm_STR 65661 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter6:66	Shorter6	microscopy	(none)	sperm mean linearity [ratio] sperm_LIN 65666 10 min 30 min 60 min 90 min 120 min	CC	12	m	15-33wks	N=3	2019

Shorter7:1	Shorter7	microscopy	(none)	percentage of sperm that are motile [%] sperm_motile 65701 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:6	Shorter7	microscopy	(none)	percentage of motile sperm that are 'vigorous' [%] sperm_vigor 65706 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:11	Shorter7	microscopy	(none)	percentage of motile sperm that are 'progressive' [%] sperm_prog 65711 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:16	Shorter7	microscopy	(none)	percentage of motile sperm that are 'hyperactivated' [%] sperm_hyper 65716 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:21	Shorter7	microscopy	(none)	percentage of motile sperm that are 'intermediate' [%] sperm_int 65721 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:26	Shorter7	microscopy	(none)	percentage of motile sperm that are 'slow' [%] sperm_slow 65726 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:31	Shorter7	microscopy	(none)	percentage of motile sperm that are 'weak' [%] sperm_weak 65731 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:36	Shorter7	microscopy	(none)	sperm mean path velocity [µm/s] sperm_VAP 65736 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:41	Shorter7	microscopy	(none)	sperm mean straight line velocity [µm/s] sperm_VSL 65741 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:46	Shorter7	microscopy	(none)	sperm mean curvilinear velocity [µm/s] sperm_VCL 65746 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:51	Shorter7	microscopy	(none)	sperm mean lateral head displacement (amplitude) [µm] sperm_ALH 65751 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:56	Shorter7	microscopy	(none)	sperm mean cross beat frequency [Hz] sperm_BCF 65756 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:61	Shorter7	microscopy	(none)	sperm mean straightness [ratio] sperm_STR 65761 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter7:66	Shorter7	microscopy	(none)	sperm mean linearity [ratio] sperm_LIN 65766 10 min 30 min 60 min 90 min 120 min	CC RIX	28	m	7-44wks	N=4	2019

Shorter8:13	Shorter8	sperm count	(none)	sperm count per mouse (x10⁶) [n] sperm_count 110168	DO population		m	12-15wks	N=150	2019

Shorter8:14	Shorter8	sperm count	(none)	sperm count per mg testis weight (x10³) [n] sperm_adj 110169	DO population		m	12-15wks	N=149	2019

Shorter8:15	Shorter8	microscopy	(none)	percentage of sperm that are motile [%] sperm_motile 110170	DO population		m	12-15wks	N=150	2019

Shorter8:16	Shorter8	microscopy	(none)	percentage of motile sperm that are 'vigorous' [%] sperm_vigor 110171	DO population		m	12-15wks	N=149	2019

Shorter8:17	Shorter8	microscopy	(none)	percentage of motile sperm that are 'progressive' [%] sperm_prog 110172	DO population		m	12-15wks	N=149	2019

Shorter8:18	Shorter8	microscopy	(none)	percentage of motile sperm that are 'hyperactivated' [%] sperm_hyper 110173	DO population		m	12-15wks	N=149	2019

Shorter8:19	Shorter8	microscopy	(none)	percentage of motile sperm that are 'intermediate' [%] sperm_int 110174	DO population		m	12-15wks	N=149	2019

Shorter8:20	Shorter8	microscopy	(none)	percentage of motile sperm that are 'slow' [%] sperm_slow 110175	DO population		m	12-15wks	N=149	2019

Shorter8:21	Shorter8	microscopy	(none)	percentage of motile sperm that are 'weak' [%] sperm_weak 110176	DO population		m	12-15wks	N=149	2019

Shorter8:22	Shorter8	microscopy	(none)	sperm mean path velocity [µm/s] sperm_VAP 110177	DO population		m	12-15wks	N=149	2019

Shorter8:23	Shorter8	microscopy	(none)	sperm mean straight line velocity [µm/s] sperm_VSL 110178	DO population		m	12-15wks	N=149	2019

Shorter8:24	Shorter8	microscopy	(none)	sperm mean curvilinear velocity [µm/s] sperm_VCL 110179	DO population		m	12-15wks	N=149	2019

Shorter8:25	Shorter8	microscopy	(none)	sperm mean lateral head displacement (amplitude) [µm] sperm_ALH 110180	DO population		m	12-15wks	N=149	2019

Shorter8:26	Shorter8	microscopy	(none)	sperm mean cross beat frequency [Hz] sperm_BCF 110181	DO population		m	12-15wks	N=149	2019

Shorter8:27	Shorter8	histopathology	(none)	percentage of sperm with normal morphology [%] normal_sperm 110182	DO population		m	12-15wks	N=150	2019

Shorter8:28	Shorter8	histopathology	(none)	percentage of sperm with abnormal head shape [%] abnormal_head 110183	DO population		m	12-15wks	N=150	2019

Shorter8:29	Shorter8	histopathology	(none)	percentage of sperm with abnormal tail bending [%] abnormal_tail 110184	DO population		m	12-15wks	N=150	2019

Shorter8:30	Shorter8	histopathology	(none)	percentage of sperm with broken tails [%] broken_tail 110185	DO population		m	12-15wks	N=150	2019

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