Project measure / variable:   Shorter4   abnormal_head

ID, description, units MPD:110115   abnormal_head   percentage of sperm with abnormal head shape   [%]  
Data set, strains Shorter4   CC   12 strains     sex: m     age: 15-33wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Shorter4 - percentage of sperm with abnormal head shape



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested12 strains
Mean of the strain means26.588   %
Median of the strain means24.441   %
SD of the strain means± 10.566
Coefficient of variation (CV)0.3974
Min–max range of strain means15.4   –   42.6   %
Mean sample size per strain3.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 11 3887.1945 353.3813 2.2285 0.0427
Residuals 28 4440.0255 158.5723


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC001/Unc m 37.9 13.628   3 7.8679 0.3596 27.4, 53.3 1.07
CC002/Unc m 36.65 21.159   4 10.579 0.5773 19.8, 67.2 0.95
CC003/Unc m 23.233 9.5296   3 5.5019 0.4102 16.3, 34.1 -0.32
CC008/GeniUnc m 17.25 1.3435   2   0.95 0.0779 16.3, 18.2 -0.88
CC010/GeniUnc m 40.125 12.438   4 6.2191 0.31 26.7, 54.1 1.28
CC011/Unc m 42.6 4.7624   3 2.7495 0.1118 37.2, 46.2 1.52
CC013/GeniUnc m 15.4 5.1215   3 2.9569 0.3326 12.1, 21.3 -1.06
CC018/Unc m 15.733 2.3798   3 1.374 0.1513 13.6, 18.3 -1.03
CC021/Unc m 31.143 17.115   7 6.4687 0.5495 15.3, 63.8 0.43
CC034/Unc m 16.875 4.4086   4 2.2043 0.2613 12.8, 22.4 -0.92
CC053/Unc m 16.5 11.597   2   8.2 0.7028 8.3, 24.7 -0.95
CC065/Unc m 25.65 4.3134   2   3.05 0.1682 22.6, 28.7 -0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC001/Unc m 37.9 7.270312658 52.7925603717 23.0074396283
CC002/Unc m 36.65 6.2962754553 49.5473356093 23.7526643907
CC003/Unc m 23.2333333333 7.270312658 38.1258937051 8.3407729616
CC008/GeniUnc m 17.25 8.9042781413 35.4895869372 -0.9895869372
CC010/GeniUnc m 40.125 6.2962754553 53.0223356093 27.2276643907
CC011/Unc m 42.6 7.270312658 57.4925603717 27.7074396283
CC013/GeniUnc m 15.4 7.270312658 30.2925603717 0.5074396283
CC018/Unc m 15.7333333333 7.270312658 30.6258937051 0.8407729616
CC021/Unc m 31.1428571429 4.7595368688 40.8923264565 21.3933878293
CC034/Unc m 16.875 6.2962754553 29.7723356093 3.9776643907
CC053/Unc m 16.5 8.9042781413 34.7395869372 -1.7395869372
CC065/Unc m 25.65 8.9042781413 43.8895869372 7.4104130628




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA