MPD: Phenotype measures mapped to MP:0005381, digestive/alimentary phenotype

Phenotype measures associated with ontology term
MP:0005381 'digestive/alimentary phenotype'

All measures in this list are mapped to the ontology descendants of MP:0005381. None are mapped to MP:0005381 directly.

MP:0000477 abnormal intestine morphology
MP:0003303 peritoneal inflammation
MP:0003868 abnormal feces composition
MP:0005310 abnormal salivary gland physiology
MP:0010377 abnormal gut flora balance
MP:0020147 abnormal defecation amount
MP:0020999 abnormal small intestine length
MP:0021000 abnormal cecum weight

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
Attie2:143	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid deoxycholate in feces after diet (per mg feces) [nmol/mg] DCA 110760	DO population		both	19-26wks	N=48	2018

Attie2:144	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid alpha-muricholate in feces after diet (per mg feces) [nmol/mg] aMCA 110761	DO population		both	19-26wks	N=48	2018

Attie2:145	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid beta-muricholate in feces after diet (per mg feces) [nmol/mg] bMCA 110762	DO population		both	19-26wks	N=48	2018

Attie2:146	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid cholate in feces after diet (per mg feces) [nmol/mg] CA 110763	DO population		both	19-26wks	N=48	2018

Attie2:147	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid glycolithocholate in feces after diet (per mg feces) [nmol/mg] GLiCA 110764	DO population		both	19-26wks	N=48	2018

Attie2:148	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid glycochenodeoxycholate in feces after diet (per mg feces) [nmol/mg] GChDCA 110765	DO population		both	19-26wks	N=48	2018

Attie2:149	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid glycoursodeoxycholate in feces after diet (per mg feces) [nmol/mg] GUDCA 110766	DO population		both	19-26wks	N=48	2018

Attie2:150	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid glycodeoxycholate in feces after diet (per mg feces) [nmol/mg] GDCA 110767	DO population		both	19-26wks	N=48	2018

Attie2:151	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid glycocholate in feces after diet (per mg feces) [nmol/mg] GCA 110768	DO population		both	19-26wks	N=48	2018

Attie2:152	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid taurolithocholate in feces after diet (per mg feces) [nmol/mg] TLiCA 110769	DO population		both	19-26wks	N=47	2018

Attie2:153	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid taurohyodeoxycholate in feces after diet (per mg feces) [nmol/mg] THDCA 110770	DO population		both	19-26wks	N=48	2018

Attie2:154	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid tauroursodeoxycholate in feces after diet (per mg feces) [nmol/mg] TUDCA 110771	DO population		both	19-26wks	N=48	2018

Attie2:155	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid taurochenodeoxycholate in feces after diet (per mg feces) [nmol/mg] TChDCA 110772	DO population		both	19-26wks	N=48	2018

Attie2:156	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid taurodeoxycholate in feces after diet (per mg feces) [nmol/mg] TDCA 110773	DO population		both	19-26wks	N=48	2018

Attie2:157	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid taurocholate in feces after diet (per mg feces) [nmol/mg] TCA 110774	DO population		both	19-26wks	N=48	2018

Attie2:158	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid tauro-alpha-muricholate in feces after diet (per mg feces) [nmol/mg] TaMCA 110775	DO population		both	19-26wks	N=48	2018

Attie2:159	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid tauro-beta-muricholate in feces after diet (per mg feces) [nmol/mg] TbMCA 110776	DO population		both	19-26wks	N=48	2018

Attie2:160	Attie2	biomarker quantification	high-fat high-sucrose diet	bile acid chenodeoxycholate in feces after diet (per mg feces) [nmol/mg] ChDCA 110777	DO population		both	19-26wks	N=48	2018

Attie2:161	Attie2	biomarker quantification	high-fat high-sucrose diet	total bile acid in feces after diet (per mg feces) [nmol/mg] bile_acid_total 110778	DO population		both	19-26wks	N=48	2018

Auwerx2:123	Auwerx2	organ weights	(none)	cecum weight [g] cecum_wt 114651 CD HFD	inbred w/CC8	9	both	21wks	N=4	2021

Broman1:1	Broman1	organ dimensions	(none)	gut length of mouse [cm] gutlength 18301	QTL population		both		N=534	2006

Brown1:10	Brown1	open field test	(none)	fecal boli count, 5 min test, day 1 [n] defecation_d1_OFT 9410	inbred	14	both	10wks	N=13	2004

Brown1:16	Brown1	light-dark box	(none)	fecal boli count [n] defecation_LD 9416	inbred	14	both	10wks	N=13	2004

Brown1:24	Brown1	elevated plus maze	(none)	fecal boli count [n] defecation_EPM 9424	inbred	14	both	10wks	N=13	2004

Brown1:32	Brown1	elevated zero maze	(none)	fecal boli count [n] defecation_EZM 9432	inbred	13	both	10wks	N=9	2004

Chesler2:41	Chesler2	open field test	(none)	number of fecal boli, 10 min test [n] fecal_boli_OFT 43461	CC diallel w/par	50	both	7-15wks	N=2	2011

Chesler2:48	Chesler2	light-dark box	(none)	number of fecal boli, 10 min test [n] fecal_boli_LD 43468	CC diallel w/par	50	both	7-15wks	N=2	2011

Chesler3:61	Chesler3	open field test	(none)	number of fecal boli, 10 min test [n] fecal_boli_OFT 43561	CC pre w/par	232	both	7-15wks	N=1	2011

Chesler3:68	Chesler3	light-dark box	(none)	number of fecal boli, 10 min test [n] fecal_boli_LD 43568	CC pre w/par	193	both	7-15wks	N=1	2011

Cowell1:2	Cowell1	in vitro assay	Staphylococcus aureus	log₁₀ bacterial colony count from peritoneal fluid 24h post-infection (x 10³) (CFU/mL) [log(n/mL)] peritoneal_CFU 49002	inbred	13	f	8wks	N=5	2012

Crusio1:12	Crusio1	open field test	(none)	number of fecal boli deposited, 20 min test [n] defec 62012	BXD w/par	55	both	10-12wks	N=8	2018

Farmer1:27	Farmer1	health assessment	(none)	diarrhea grade [score] Diarrhea 11327	QTL population		both	6wks	N=206	2001

Farmer1:28	Farmer1	microscopy	(none)	blood in feces [score] Color 11328	QTL population		both	6wks	N=206	2001

Flaherty1:18	Flaherty1	elevated zero maze	(none)	total number fecal boli [n] boli 11818	inbred	8	both	8-9wks	N=20	2001

Gershenfeld1:18	Gershenfeld1	open field test	imipramine	number of fecal boli, 15 min test [n] defecation 16218 baseline imipramine 30mg/kg	inbred	12	m	5-10wks	N=5	2003

GMC03:8	GMC03	observation (SHIRPA)	(none)	defecation (0=present, 1=absent) [score] defecation 55221	inbred w/CC8	8	both	8-10wks	N=17	2018

JaxCC1:9025	JaxCC1	open field test	(none)	number of fecal boli, 20 min test [n] defecation_OF 89025	CC	18	both	7-9wks	N=7	2018

JaxCC1:9094	JaxCC1	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD 89094	CC	18	both	8-10wks	N=7	2017

JaxKOMP-EAP:15	JaxKOMP-EAP	open field test	(none)	number of fecal boli, 20 min test [n] fecal_boli 100246	KOMP	1225	both	8wks	N=9	2021

JaxKOMP-EAP:141	JaxKOMP-EAP	observation (SHIRPA)	(none)	salivation salivation 100435 categorical	KOMP	2022	both	9wks		2021

JaxKOMP-EAP:170	JaxKOMP-EAP	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD fecal_boli_ld 100486	KOMP	1235	both	10wks	N=9	2021

JaxKOMP-LAP:15	JaxKOMP-LAP	open field test	(none)	number of fecal boli, 20 min test [n] fecal_boli 101246	KOMP	31	both	66-72wks	N=8	2021

JaxKOMP-LAP:130	JaxKOMP-LAP	observation (SHIRPA)	(none)	salivation salivation 101435 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:165	JaxKOMP-LAP	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD fecal_boli_ld 101486	KOMP	32	both	67-73wks	N=8	2021

Jaxpheno7:12	Jaxpheno7	observation (SHIRPA)	(none)	number of fecal boli in view-jar [n] defecation_jar 34912	inbred	6	m	10wks	N=8	2010

Jaxpheno7:14	Jaxpheno7	observation (SHIRPA)	(none)	number of fecal boli in arena [n] defecation_arena 34914	inbred	6	m	10wks	N=8	2010

Jaxpheno7:27	Jaxpheno7	observation (SHIRPA)	(none)	salivation response when provoked with probe between teeth during supine restraint (score 0-2) [score] salivation 34927	inbred	6	m	10wks	N=8	2010

Koide3:15	Koide3	open field test	(none)	number of fecal boli, 10 min test [n] defecation 35915	wild-derived Mishima	12	both	10wks	N=10	2006

Kumar1:20	Kumar1	open field test	(none)	number of boli at end of open field test [n] FB1 29020	QTL population		both	10-14wks	N=122	2014

Lake2:4	Lake2	observation (SHIRPA)	(none)	number of fecal boli in view-jar [n] defecation_jar 21704	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake2:8	Lake2	observation (SHIRPA)	(none)	number of fecal boli in arena [n] defecation_arena 21708	B6.A consomic w/par	23	both	8wks	N=8	2005

Lake3:3	Lake3	hole board test	(none)	number of fecal boli in 5 min test [n] defecation 19003	B6.A consomic w/par	23	both	8-9wks	N=8	2005

Schoenrock1:14	Schoenrock1	open field test	various diets	number of fecal boli, 10 min test [g] OF_boli 61214 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:30	Schoenrock1	light-dark box	various diets	number of fecal boli, 10 min test [n] LD_boli 61230 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoenrock1:66	Schoenrock1	forced swim test	various diets	number of fecal boli, 6 min test [n] FST_boli 61266 standard diet protein-deficient diet methyl-enriched diet vitamin D-deficient diet	CC RIX	18	f	8-9wks	N=11	2018

Schoonjans1:123	Schoonjans1	biomarker quantification	high-fat diet	bile acid 3-oxocholic acid amount in feces, at 24 wks [ng/mL] oxo_CA_feces 112754 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:125	Schoonjans1	biomarker quantification	high-fat diet	bile acid 7-ketodeoxycholic acid amount in feces, at 24 wks [ng/mL] keto_DCA_feces 112756 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:127	Schoonjans1	biomarker quantification	high-fat diet	bile acid 7-ketolithocholic acid amount in feces, at 24 wks [ng/mL] keto_LCA_feces 112758 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:129	Schoonjans1	biomarker quantification	high-fat diet	bile acid α-muricholic acid amount in feces, at 24 wks [ng/mL] aMCA_feces 112760 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:131	Schoonjans1	biomarker quantification	high-fat diet	bile acid β-muricholic acid amount in feces, at 24 wks [ng/mL] bMCA_feces 112762 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:133	Schoonjans1	biomarker quantification	high-fat diet	bile acid cholic acid amount in feces, at 24 wks [ng/mL] CA_feces 112764 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:135	Schoonjans1	biomarker quantification	high-fat diet	bile acid chenodeoxycholic acid amount in feces, at 24 wks [ng/mL] CDCA_feces 112766 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:137	Schoonjans1	biomarker quantification	high-fat diet	bile acid deoxycholic acid amount in feces, at 24 wks [ng/mL] DCA_feces 112768 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:139	Schoonjans1	biomarker quantification	high-fat diet	bile acid glycocholic acid amount in feces, at 24 wks [ng/mL] GCA_feces 112770 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:141	Schoonjans1	biomarker quantification	high-fat diet	bile acid glycochenodeoxycholic acid amount in feces, at 24 wks [ng/mL] GCDCA_feces 112772 CD HFD	BXD w/par	35	m	24wks	N=1	2021

Schoonjans1:143	Schoonjans1	biomarker quantification	high-fat diet	bile acid glycohyodeoxycholic acid amount in feces, at 24 wks [ng/mL] GHDCA_feces 112774 CD HFD	BXD w/par	14	m	24wks	N=2	2021

Schoonjans1:145	Schoonjans1	biomarker quantification	high-fat diet	bile acid glycolithocholic acid amount in feces, at 24 wks [ng/mL] GLCA_feces 112776 CD HFD	BXD w/par	20	m	24wks	N=2	2021

Schoonjans1:147	Schoonjans1	biomarker quantification	high-fat diet	bile acid glycoursodeoxycholic acid amount in feces, at 24 wks [ng/mL] GUDCA_feces 112778 CD HFD	BXD w/par	17	m	24wks	N=1	2021

Schoonjans1:149	Schoonjans1	biomarker quantification	high-fat diet	bile acid isodeoxycholic acid amount in feces, at 24 wks [ng/mL] IsoDCA_feces 112780 CD HFD	BXD w/par	36	m	24wks	N=1	2021

Schoonjans1:151	Schoonjans1	biomarker quantification	high-fat diet	bile acid 3-oxocholic acid amount in feces, at 24 wks [ng/mL] LCA_feces 112782 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:153	Schoonjans1	biomarker quantification	high-fat diet	bile acid γ-muricholic acid amount in feces, at 24 wks [ng/mL] MCA_feces 112784 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:155	Schoonjans1	biomarker quantification	high-fat diet	bile acid murocholic acid amount in feces, at 24 wks [ng/mL] MDCA_feces 112786 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:157	Schoonjans1	biomarker quantification	high-fat diet	bile acid tauro-α-muricholic acid in feces, at 24 wks [ng/mL] TaMCA_feces 112788 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:159	Schoonjans1	biomarker quantification	high-fat diet	bile acid tauro-β-muricholic acid amount in feces, at 24 wks [ng/mL] TbMCA_feces 112790 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:161	Schoonjans1	biomarker quantification	high-fat diet	bile acid taurocholic acid amount in feces, at 24 wks [ng/mL] TCA_feces 112792 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:163	Schoonjans1	biomarker quantification	high-fat diet	bile acid taurocholic acid amount in feces, at 24 wks [ng/mL] TCDCA_feces 112794 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:165	Schoonjans1	biomarker quantification	high-fat diet	bile acid taurodeoxycholic acid amount in feces, at 24 wks [ng/mL] TDCA_feces 112796 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:167	Schoonjans1	biomarker quantification	high-fat diet	bile acid taurohyodeoxycholic acid amount in feces, at 24 wks [ng/mL] THDCA_feces 112798 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:169	Schoonjans1	biomarker quantification	high-fat diet	bile acid taurolithocholic acid amount in feces, at 24 wks [ng/mL] TLCA_feces 112800 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:171	Schoonjans1	biomarker quantification	high-fat diet	bile acid tauroursodeoxycholic acid amount in feces, at 24 wks [ng/mL] TUDCA_feces 112802 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:173	Schoonjans1	biomarker quantification	high-fat diet	bile acid ursodeoxycholic acid amount in feces, at 24 wks [ng/mL] UDCA_feces 112804 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:175	Schoonjans1	biomarker quantification	high-fat diet	bile acid ω-muricholic acid in feces, at 24 wks [ng/mL] wMCA_feces 112806 CD HFD	BXD w/par	36	m	24wks	N=5	2021

Schoonjans1:234	Schoonjans1	organ weights	high-fat diet	cecum weight [g] cecum_wt 112869 CD HFD	BXD w/par	36	m	29wks	N=5	2021

Schoonjans1:236	Schoonjans1	organ dimensions	high-fat diet	small intestine length [cm] small_intestine_length 112871 CD HFD	BXD w/par	36	m	29wks	N=5	2021

Wahlsten1:32	Wahlsten1	open field test	(none)	number of fecal boli, within 5 min trial [n] defecation_OFT 10832	inbred	21	both	9wks	N=9	2003

Wahlsten1:51	Wahlsten1	elevated plus maze	(none)	number fecal boli, 5 min trial [n] defecation_EPM 10851	inbred	21	both	9wks	N=9	2003

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