Project measure / variable:   Graham1   Treg_spleen_d7

ID, description, units MPD:63341   Treg_spleen_d7   percentage of CD4+ T cells that are Foxp3+ in the spleen, post infection   [%]  day 7  
West Nile virus study
Data set, strains Graham1   CC RIX   2 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD4+ T cells that are Foxp3+ in the spleen, post infection day 7

RIX:CC(041 x 012)RIX:CC(004 x 011) % 681012141618femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested2 strains
Mean of the strain means10.242   %
Median of the strain means10.242   %
SD of the strain means± 0.69509
Coefficient of variation (CV)0.0679
Min–max range of strain means9.75   –   10.733   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 1 1.4504 1.4504 0.0435 0.845
Residuals 4 133.4385 33.3596


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
RIX:CC(004 x 011) m 9.75 8.0979   3 4.6753 0.8306 4.98, 19.1 -0.71
RIX:CC(041 x 012) m 10.733 1.0693   3 0.61734 0.0996 9.8, 11.9 0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 9.75 3.334647241 19.00846501 0.49153499
RIX:CC(041 x 012) m 10.7333333333 3.334647241 19.9917983433 1.4748683234




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA