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Project measure / variable:   Crusio1   lacun_pct_L

ID, description, units MPD:62082   lacun_pct_L   percentage of hippocampus that is stratum lacunosum-moleculare   [%]  left  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum lacunosum-moleculare left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means5.6889   % 6.1435   %
Median of the strain means5.7351   % 5.7886   %
SD of the strain means± 0.80172 ± 1.9571
Coefficient of variation (CV)0.1409 0.3186
Min–max range of strain means4.2911   –   7.5534   % 4.2465   –   18.389   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 9.9586 9.9586 9.0917 0.0028
strain 47 214.0001 4.5532 4.1568 < 0.0001
sex:strain 47 101.9478 2.1691 1.9803 0.0003
Residuals 343 375.7065 1.0954


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 7.1331 0.0   1   0.0 0.0 7.133139994, 7.133139994 1.8
BXD1 m 6.7017 0.0   1   0.0 0.0 6.701718755, 6.701718755 0.29
BXD100 f 6.5932 1.1507   5 0.51461 0.1745 5.586948227, 8.467777523 1.13
BXD100 m 5.8482 0.70545   5 0.31549 0.1206 4.727535494, 6.435915843 -0.15
BXD101 f 6.6253 1.0837   3 0.62568 0.1636 5.4465467, 7.578464307 1.17
BXD101 m 5.7928 0.31842   4 0.15921 0.055 5.393324841, 6.096335519 -0.18
BXD102 f 6.8058 0.32593   5 0.14576 0.0479 6.391927498, 7.185631188 1.39
BXD102 m 5.8102 0.94586   5 0.423 0.1628 5.307564887, 7.497257232 -0.17
BXD11 f 4.8063 0.93609   5 0.41863 0.1948 3.653850676, 5.685322913 -1.1
BXD11 m 4.8978 0.80858   5 0.36161 0.1651 3.517801278, 5.650552739 -0.64
BXD13 f 6.2489 0.58766   5 0.26281 0.094 5.526234568, 6.851429211 0.7
BXD13 m 6.6788 0.4328   5 0.19355 0.0648 6.197022696, 7.17264794 0.27
BXD14 f 5.9663 0.73041   5 0.32665 0.1224 5.123250544, 7.071699183 0.35
BXD14 m 5.7344 0.83947   5 0.37542 0.1464 4.863324031, 6.910095837 -0.21
BXD15 f 5.7818 0.54811   5 0.24512 0.0948 5.149079859, 6.574730237 0.12
BXD15 m 6.4215 0.79198   5 0.35418 0.1233 5.848291403, 7.790765778 0.14
BXD16 f 5.7657 0.68766   5 0.30753 0.1193 4.911116022, 6.622640324 0.1
BXD16 m 5.6263 1.2087   5 0.54054 0.2148 4.406841227, 7.272945048 -0.26
BXD18 f 7.231 0.0   1   0.0 0.0 7.231046848, 7.231046848 1.92
BXD18 m 6.6941 0.0   1   0.0 0.0 6.694078757, 6.694078757 0.28
BXD19 f 6.0876 0.0   1   0.0 0.0 6.087569438, 6.087569438 0.5
BXD19 m 5.7886 0.0   1   0.0 0.0 5.788614451, 5.788614451 -0.18
BXD2 f 4.5678 0.39381   5 0.17612 0.0862 3.8851933, 4.822232658 -1.4
BXD2 m 5.3171 0.51078   5 0.22843 0.0961 4.860388197, 6.01601644 -0.42
BXD21 f 6.1622 0.91583   5 0.40957 0.1486 5.224846324, 7.262499115 0.59
BXD21 m 5.3344 0.68894   6 0.28126 0.1292 4.578611835, 6.26756456 -0.41
BXD27 f 7.5534 3.0856   5 1.3799 0.4085 5.413907077, 12.88225763 2.33
BXD27 m 5.8574 0.43053   5 0.19254 0.0735 5.225871641, 6.285439338 -0.15
BXD28 f 4.8324 0.69525   5 0.31093 0.1439 4.162291404, 5.97217574 -1.07
BXD28 m 5.5132 0.66189   5 0.29601 0.1201 4.79817318, 6.378706684 -0.32
BXD31 f 6.6565 0.67509   5 0.30191 0.1014 5.618911806, 7.404745855 1.21
BXD31 m 7.5216 0.75953   4 0.37977 0.101 6.616625477, 8.473006994 0.7
BXD32 f 4.8563 0.46862   5 0.20957 0.0965 4.431150264, 5.539000757 -1.04
BXD32 m 5.5974 0.68787   5 0.30763 0.1229 4.829260718, 6.367361616 -0.28
BXD33 m 5.3885 0.0   1   0.0 0.0 5.388512458, 5.388512458 -0.39
BXD34 f 6.0966 0.0   1   0.0 0.0 6.096564293, 6.096564293 0.51
BXD34 m 4.4901 0.0   1   0.0 0.0 4.490072673, 4.490072673 -0.84
BXD39 f 4.5664 0.95694   5 0.42796 0.2096 3.165849907, 5.583660328 -1.4
BXD39 m 4.9174 0.63744   5 0.28507 0.1296 4.112115028, 5.629912062 -0.63
BXD40 f 5.5634 1.1185   5 0.50022 0.201 4.721912317, 7.43119485 -0.16
BXD40 m 6.4242 0.61969   5 0.27713 0.0965 5.961281727, 7.388523597 0.14
BXD42 f 5.8297 0.58067   5 0.25968 0.0996 4.898365809, 6.351204101 0.18
BXD42 m 6.2093 0.37909   5 0.16953 0.0611 5.84788772, 6.643483063 0.03
BXD43 f 5.7351 0.32407   5 0.14493 0.0565 5.342562806, 6.075986909 0.06
BXD43 m 5.2191 0.44959   5 0.20106 0.0861 4.683234605, 5.620579897 -0.47
BXD44 f 6.0275 0.44842   5 0.20054 0.0744 5.659807524, 6.763508435 0.42
BXD44 m 5.5381 1.2002   5 0.53675 0.2167 4.085240527, 7.306013207 -0.31
BXD48 f 4.7732 1.0131   5 0.45306 0.2122 3.94690469, 6.183877644 -1.14
BXD48 m 4.9415 0.39539   5 0.17682 0.08 4.549701315, 5.391569035 -0.61
BXD49 f 6.6718 1.2826   4 0.64128 0.1922 4.997677257, 7.683016114 1.23
BXD49 m 6.7539 1.0653   5 0.47642 0.1577 5.595095833, 7.834737038 0.31
BXD50 f 5.7417 1.0264   5 0.45901 0.1788 4.177548786, 6.843967756 0.07
BXD50 m 6.6906 0.76358   5 0.34148 0.1141 5.75607669, 7.643209317 0.28
BXD51 f 5.9111 0.8225   5 0.36783 0.1391 4.897736331, 7.028163461 0.28
BXD51 m 6.1319 0.70115   5 0.31356 0.1143 5.319842109, 6.941811486 -0.01
BXD6 f 6.0199 0.48549   5 0.21712 0.0806 5.561038911, 6.779326426 0.41
BXD6 m 7.0153 0.3323   4 0.16615 0.0474 6.564385991, 7.267300715 0.45
BXD61 f 5.4846 0.58516   5 0.26169 0.1067 4.617330066, 5.988889417 -0.25
BXD61 m 5.5575 0.87499   5 0.39131 0.1574 4.305279323, 6.532493077 -0.3
BXD62 f 5.1373 0.49747   5 0.22247 0.0968 4.52106043, 5.760565813 -0.69
BXD62 m 4.9168 0.83947   5 0.37542 0.1707 3.891201248, 5.78746585 -0.63
BXD65 f 5.635 0.46431   3 0.26807 0.0824 5.136098275, 6.054490414 -0.07
BXD65 m 5.8952 0.27509   5 0.12302 0.0467 5.503667954, 6.26676292 -0.13
BXD66 f 5.3812 0.2109   2   0.14913 0.0392 5.232059473, 5.530313109 -0.38
BXD66 m 6.2217 1.8771   2   1.3273 0.3017 4.894449291, 7.54900018 0.04
BXD68 f 5.4065 0.96158   2   0.67994 0.1779 4.726585432, 6.086463614 -0.35
BXD68 m 5.5429 0.43973   3 0.25388 0.0793 5.237652293, 6.046918328 -0.31
BXD69 f 5.2856 0.65416   4 0.32708 0.1238 4.689126593, 6.086384767 -0.5
BXD69 m 5.2279 0.5382   5 0.24069 0.1029 4.353421068, 5.732812058 -0.47
BXD70 f 5.1472 0.70326   5 0.31451 0.1366 4.547921709, 6.360518348 -0.68
BXD70 m 6.0381 0.80301   5 0.35912 0.133 5.171312781, 7.113288251 -0.05
BXD71 m 4.2465 0.0   1   0.0 0.0 4.246516629, 4.246516629 -0.97
BXD73 f 5.6811 0.71834   5 0.32125 0.1264 4.870449291, 6.642452343 -0.01
BXD73 m 7.9411 3.2546   5 1.4555 0.4098 6.202753751, 13.7406904 0.92
BXD75 f 5.7362 0.82528   5 0.36907 0.1439 4.813443625, 6.739046352 0.06
BXD75 m 5.7661 0.38999   5 0.17441 0.0676 5.223896927, 6.203353679 -0.19
BXD77 f 5.2056 0.50977   2   0.36046 0.0979 4.845162319, 5.566080737 -0.6
BXD77 m 5.4738 0.15314   2   0.10829 0.028 5.365564839, 5.582135082 -0.34
BXD8 f 5.3107 0.64666   5 0.2892 0.1218 4.238933277, 5.896326319 -0.47
BXD8 m 5.2762 0.53051   5 0.23725 0.1005 4.610172826, 5.857371805 -0.44
BXD80 f 6.0427 0.83443   5 0.37317 0.1381 5.159763641, 7.389375041 0.44
BXD80 m 5.9922 0.49435   5 0.22108 0.0825 5.587972111, 6.847880595 -0.08
BXD81 f 4.7311 0.49625   5 0.22193 0.1049 4.02768866, 5.32985942 -1.19
BXD81 m 5.437 1.0698   5 0.47841 0.1968 4.322724064, 6.92992483 -0.36
BXD84 f 6.3814 0.64733   5 0.28949 0.1014 5.332111356, 6.879603127 0.86
BXD84 m 6.0235 0.75041   5 0.33559 0.1246 5.458723352, 7.220571982 -0.06
BXD85 f 6.42 0.16126   2   0.11403 0.0251 6.305945525, 6.53400613 0.91
BXD85 m 6.7905 0.07214   2   0.05101 0.0106 6.739453642, 6.841469405 0.33
BXD86 f 4.2911 0.68725   5 0.30735 0.1602 3.613772377, 5.394650657 -1.74
BXD86 m 5.1201 0.3316   4 0.1658 0.0648 4.63490314, 5.38090369 -0.52
BXD87 f 5.5052 1.1707   5 0.52355 0.2127 3.817303277, 7.119317581 -0.23
BXD87 m 5.7579 0.87595   5 0.39174 0.1521 4.799496508, 6.806552669 -0.2
BXD89 f 5.1471 0.99091   5 0.44315 0.1925 4.039755025, 6.64256247 -0.68
BXD89 m 5.9488 0.99967   5 0.44707 0.168 4.393623062, 7.136750228 -0.1
BXD90 f 4.4831 0.51032   3 0.29463 0.1138 4.076026653, 5.055633152 -1.5
BXD90 m 10.704 7.1342   3 4.1189 0.6665 6.313735265, 18.93581244 2.33
BXD92 f 6.0783 0.0   1   0.0 0.0 6.078252982, 6.078252982 0.49
BXD92 m 18.389 0.0   1   0.0 0.0 18.38883375, 18.38883375 6.26
BXD96 f 4.5858 0.30885   5 0.13812 0.0673 4.129056826, 4.917907382 -1.38
BXD96 m 5.2842 1.1143   5 0.49834 0.2109 3.897733277, 6.709562894 -0.44
BXD97 f 4.904 0.77164   5 0.34509 0.1573 3.920091078, 5.60085813 -0.98
BXD97 m 5.8198 0.57223   4 0.28611 0.0983 5.392365098, 6.664042637 -0.17
BXD98 f 4.9726 0.94312   2   0.66689 0.1897 4.305693234, 5.639464025 -0.89
BXD98 m 5.3399 1.7668   4 0.88338 0.3309 4.280591794, 7.972140916 -0.41
C57BL/6J f 7.3892 0.6849   5 0.3063 0.0927 6.531525205, 8.175508124 2.12
C57BL/6J m 7.6966 0.78624   5 0.35162 0.1022 6.795284653, 8.748993104 0.79
DBA/2J f 4.5616 0.58939   5 0.26358 0.1292 3.572674643, 5.108373003 -1.41
DBA/2J m 4.6316 0.69641   5 0.31144 0.1504 3.614294409, 5.290777952 -0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 6.5932 0.4681 7.5138 5.6725
BXD100 m 5.8482 0.4681 6.7688 4.9276
BXD101 f 6.6253 0.6043 7.8138 5.4368
BXD101 m 5.7928 0.5233 6.8221 4.7635
BXD102 f 6.8058 0.4681 7.7264 5.8851
BXD102 m 5.8102 0.4681 6.7308 4.8895
BXD11 f 4.8063 0.4681 5.7269 3.8857
BXD11 m 4.8978 0.4681 5.8184 3.9772
BXD13 f 6.2489 0.4681 7.1695 5.3283
BXD13 m 6.6788 0.4681 7.5994 5.7582
BXD14 f 5.9663 0.4681 6.8869 5.0457
BXD14 m 5.7344 0.4681 6.655 4.8138
BXD15 f 5.7818 0.4681 6.7024 4.8612
BXD15 m 6.4215 0.4681 7.3421 5.5009
BXD16 f 5.7657 0.4681 6.6863 4.8451
BXD16 m 5.6263 0.4681 6.5469 4.7057
BXD2 f 4.5678 0.4681 5.4884 3.6472
BXD2 m 5.3171 0.4681 6.2377 4.3965
BXD21 f 6.1622 0.4681 7.0828 5.2416
BXD21 m 5.3344 0.4273 6.1748 4.494
BXD27 f 7.5534 0.4681 8.474 6.6328
BXD27 m 5.8574 0.4681 6.778 4.9368
BXD28 f 4.8324 0.4681 5.753 3.9118
BXD28 m 5.5132 0.4681 6.4338 4.5926
BXD31 f 6.6565 0.4681 7.5771 5.7359
BXD31 m 7.5216 0.5233 8.5509 6.4923
BXD32 f 4.8563 0.4681 5.7769 3.9357
BXD32 m 5.5974 0.4681 6.5181 4.6768
BXD39 f 4.5664 0.4681 5.487 3.6458
BXD39 m 4.9174 0.4681 5.8381 3.9968
BXD40 f 5.5634 0.4681 6.484 4.6428
BXD40 m 6.4242 0.4681 7.3448 5.5036
BXD42 f 5.8297 0.4681 6.7503 4.9091
BXD42 m 6.2093 0.4681 7.1299 5.2887
BXD43 f 5.7351 0.4681 6.6557 4.8144
BXD43 m 5.2191 0.4681 6.1397 4.2985
BXD44 f 6.0275 0.4681 6.9481 5.1069
BXD44 m 5.5381 0.4681 6.4587 4.6175
BXD48 f 4.7732 0.4681 5.6938 3.8526
BXD48 m 4.9415 0.4681 5.8621 4.0209
BXD49 f 6.6718 0.5233 7.7011 5.6426
BXD49 m 6.7539 0.4681 7.6745 5.8333
BXD50 f 5.7417 0.4681 6.6623 4.8211
BXD50 m 6.6906 0.4681 7.6112 5.77
BXD51 f 5.9111 0.4681 6.8317 4.9905
BXD51 m 6.1319 0.4681 7.0525 5.2113
BXD6 f 6.0199 0.4681 6.9405 5.0993
BXD6 m 7.0153 0.5233 8.0446 5.9861
BXD61 f 5.4846 0.4681 6.4053 4.564
BXD61 m 5.5575 0.4681 6.4781 4.6369
BXD62 f 5.1373 0.4681 6.0579 4.2167
BXD62 m 4.9168 0.4681 5.8374 3.9962
BXD65 f 5.635 0.6043 6.8235 4.4465
BXD65 m 5.8952 0.4681 6.8158 4.9745
BXD66 f 5.3812 0.7401 6.8368 3.9256
BXD66 m 6.2217 0.7401 7.6773 4.7661
BXD68 f 5.4065 0.7401 6.8621 3.9509
BXD68 m 5.5429 0.6043 6.7314 4.3544
BXD69 f 5.2856 0.5233 6.3148 4.2563
BXD69 m 5.2279 0.4681 6.1485 4.3073
BXD70 f 5.1472 0.4681 6.0678 4.2266
BXD70 m 6.0381 0.4681 6.9587 5.1174
BXD73 f 5.6811 0.4681 6.6018 4.7605
BXD73 m 7.9411 0.4681 8.8617 7.0205
BXD75 f 5.7362 0.4681 6.6568 4.8156
BXD75 m 5.7661 0.4681 6.6867 4.8455
BXD77 f 5.2056 0.7401 6.6612 3.75
BXD77 m 5.4738 0.7401 6.9295 4.0182
BXD8 f 5.3107 0.4681 6.2313 4.39
BXD8 m 5.2762 0.4681 6.1968 4.3556
BXD80 f 6.0427 0.4681 6.9633 5.1221
BXD80 m 5.9922 0.4681 6.9128 5.0716
BXD81 f 4.7311 0.4681 5.6517 3.8105
BXD81 m 5.437 0.4681 6.3576 4.5164
BXD84 f 6.3814 0.4681 7.302 5.4608
BXD84 m 6.0235 0.4681 6.9441 5.1029
BXD85 f 6.42 0.7401 7.8756 4.9644
BXD85 m 6.7905 0.7401 8.2461 5.3348
BXD86 f 4.2911 0.4681 5.2117 3.3705
BXD86 m 5.1201 0.5233 6.1493 4.0908
BXD87 f 5.5052 0.4681 6.4259 4.5846
BXD87 m 5.7579 0.4681 6.6786 4.8373
BXD89 f 5.1471 0.4681 6.0678 4.2265
BXD89 m 5.9488 0.4681 6.8694 5.0282
BXD90 f 4.4831 0.6043 5.6716 3.2946
BXD90 m 10.704 0.6043 11.8925 9.5155
BXD96 f 4.5858 0.4681 5.5064 3.6652
BXD96 m 5.2842 0.4681 6.2048 4.3636
BXD97 f 4.904 0.4681 5.8246 3.9834
BXD97 m 5.8198 0.5233 6.8491 4.7905
BXD98 f 4.9726 0.7401 6.4282 3.517
BXD98 m 5.3399 0.5233 6.3691 4.3106
C57BL/6J f 7.3892 0.4681 8.3098 6.4686
C57BL/6J m 7.6966 0.4681 8.6172 6.776
DBA/2J f 4.5616 0.4681 5.4822 3.641
DBA/2J m 4.6316 0.4681 5.5522 3.711


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 6.2207 0.331 6.8716 5.5697
BXD101 both 6.209 0.3997 6.9952 5.4229
BXD102 both 6.308 0.331 6.9589 5.657
BXD11 both 4.852 0.331 5.503 4.2011
BXD13 both 6.4638 0.331 7.1148 5.8129
BXD14 both 5.8504 0.331 6.5014 5.1994
BXD15 both 6.1016 0.331 6.7526 5.4507
BXD16 both 5.696 0.331 6.347 5.045
BXD2 both 4.9425 0.331 5.5934 4.2915
BXD21 both 5.7483 0.3169 6.3716 5.1251
BXD27 both 6.7054 0.331 7.3564 6.0544
BXD28 both 5.1728 0.331 5.8237 4.5218
BXD31 both 7.0891 0.351 7.7795 6.3986
BXD32 both 5.2269 0.331 5.8778 4.5759
BXD39 both 4.7419 0.331 5.3929 4.091
BXD40 both 5.9938 0.331 6.6448 5.3429
BXD42 both 6.0195 0.331 6.6705 5.3686
BXD43 both 5.4771 0.331 6.128 4.8261
BXD44 both 5.7828 0.331 6.4338 5.1318
BXD48 both 4.8573 0.331 5.5083 4.2063
BXD49 both 6.7129 0.351 7.4033 6.0224
BXD50 both 6.2161 0.331 6.8671 5.5652
BXD51 both 6.0215 0.331 6.6725 5.3705
BXD6 both 6.5176 0.351 7.2081 5.8272
BXD61 both 5.5211 0.331 6.172 4.8701
BXD62 both 5.0271 0.331 5.678 4.3761
BXD65 both 5.7651 0.3822 6.5167 5.0134
BXD66 both 5.8015 0.5233 6.8307 4.7722
BXD68 both 5.4747 0.4777 6.4143 4.5351
BXD69 both 5.2567 0.351 5.9472 4.5663
BXD70 both 5.5926 0.331 6.2436 4.9417
BXD73 both 6.8111 0.331 7.4621 6.1602
BXD75 both 5.7512 0.331 6.4021 5.1002
BXD77 both 5.3397 0.5233 6.369 4.3105
BXD8 both 5.2934 0.331 5.9444 4.6425
BXD80 both 6.0174 0.331 6.6684 5.3665
BXD81 both 5.0841 0.331 5.735 4.4331
BXD84 both 6.2025 0.331 6.8534 5.5515
BXD85 both 6.6052 0.5233 7.6345 5.5759
BXD86 both 4.7056 0.351 5.3961 4.0151
BXD87 both 5.6316 0.331 6.2826 4.9806
BXD89 both 5.548 0.331 6.1989 4.897
BXD90 both 7.5936 0.4273 8.434 6.7532
BXD96 both 4.935 0.331 5.586 4.2841
BXD97 both 5.3619 0.351 6.0524 4.6714
BXD98 both 5.1562 0.4532 6.0476 4.2648
C57BL/6J both 7.5429 0.331 8.1939 6.8919
DBA/2J both 4.5966 0.331 5.2476 3.9456




  GWAS USING LINEAR MIXED MODELS