Project measure / variable:   Crusio1   hilus_pct_R

ID, description, units MPD:62058   hilus_pct_R   percentage of hippocampus that is hilus   [%]  right  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is hilus right

BXD13C57BL/6JBXD61BXD102BXD92BXD40BXD49BXD42BXD31BXD62BXD33BXD6BXD70BXD1BXD69BXD81BXD14BXD65BXD39BXD68BXD19BXD28BXD101BXD27BXD84BXD98BXD50BXD44BXD48BXD21BXD85BXD32BXD80BXD90BXD11BXD77BXD16BXD73BXD8BXD18DBA/2JBXD75BXD87BXD89BXD96BXD66BXD2BXD51BXD86BXD97BXD71BXD15BXD100BXD34BXD43 % 56789101112131415femalemale


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means9.3519   % 9.6692   %
Median of the strain means9.5292   % 9.6367   %
SD of the strain means± 1.0772 ± 1.1399
Coefficient of variation (CV)0.1152 0.1179
Min–max range of strain means7.225   –   12.028   % 7.3515   –   12.668   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 11.0095 11.0095 7.4024 0.0068
strain 47 459.7301 9.7815 6.5767 < 0.0001
sex:strain 47 60.4501 1.2862 0.8648 0.7229
Residuals 343 510.1427 1.4873


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 108 (108)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
BXD1 f 9.6304 0.0   1   0.0 0.0 9.630388559, 9.630388559 0.26
BXD1 m 10.551 0.0   1   0.0 0.0 10.55131146, 10.55131146 0.77
BXD100 f 7.3809 0.59741   5 0.26717 0.0809 6.598029804, 8.207360053 -1.83
BXD100 m 8.1593 1.2768   5 0.571 0.1565 6.908870757, 10.23404393 -1.32
BXD101 f 9.5857 0.65211   3 0.3765 0.068 9.038289947, 10.30716792 0.22
BXD101 m 9.8392 1.4182   4 0.70912 0.1441 8.391692027, 11.78583298 0.15
BXD102 f 11.4 2.4793   5 1.1088 0.2175 8.805843696, 15.37247719 1.9
BXD102 m 11.251 0.62715   5 0.28047 0.0557 10.6678622, 12.25624604 1.39
BXD11 f 9.3215 0.66708   5 0.29833 0.0716 8.366135346, 10.03454519 -0.03
BXD11 m 8.8877 1.1075   5 0.4953 0.1246 7.631551864, 10.14857369 -0.69
BXD13 f 12.028 1.8078   5 0.80849 0.1503 8.999697249, 13.81471273 2.48
BXD13 m 12.084 1.0114   5 0.45231 0.0837 10.96695395, 13.48595476 2.12
BXD14 f 10.097 0.80022   5 0.35787 0.0793 9.18539458, 11.04556786 0.69
BXD14 m 9.7934 0.87478   5 0.39121 0.0893 8.716510374, 11.09673884 0.11
BXD15 f 7.7745 0.73224   5 0.32747 0.0942 7.165825364, 9.041248761 -1.46
BXD15 m 8.2264 0.41785   5 0.18687 0.0508 7.789017763, 8.742312116 -1.27
BXD16 f 8.9469 1.7663   5 0.78991 0.1974 7.731163617, 11.99376632 -0.38
BXD16 m 9.037 1.1878   5 0.53119 0.1314 7.393167109, 10.22831484 -0.55
BXD18 f 9.0694 0.0   1   0.0 0.0 9.069397014, 9.069397014 -0.26
BXD18 m 8.6519 0.0   1   0.0 0.0 8.65187988, 8.65187988 -0.89
BXD19 f 9.4848 0.0   1   0.0 0.0 9.484825819, 9.484825819 0.12
BXD19 m 10.036 0.0   1   0.0 0.0 10.03564338, 10.03564338 0.32
BXD2 f 8.568 0.61989   5 0.27722 0.0723 7.539641188, 9.219148836 -0.73
BXD2 m 8.1439 0.95272   5 0.42607 0.117 7.071911942, 9.235392193 -1.34
BXD21 f 9.7149 0.84047   5 0.37587 0.0865 8.424032969, 10.42605255 0.34
BXD21 m 9.2288 0.71638   6 0.29246 0.0776 8.417517415, 10.21503827 -0.39
BXD27 f 9.333 0.89509   5 0.4003 0.0959 8.234567091, 10.29408848 -0.02
BXD27 m 10.025 0.72433   5 0.32393 0.0722 9.376341496, 11.26217944 0.31
BXD28 f 9.605 1.8475   5 0.82621 0.1923 6.60343235, 11.58960128 0.23
BXD28 m 9.9058 0.51998   5 0.23254 0.0525 9.121836036, 10.44339795 0.21
BXD31 f 9.5292 0.83181   5 0.372 0.0873 8.521123665, 10.61459719 0.16
BXD31 m 11.247 1.7099   4 0.85495 0.152 8.827004407, 12.50930147 1.38
BXD32 f 9.8267 0.93934   5 0.42009 0.0956 8.575408735, 10.90739205 0.44
BXD32 m 9.1047 0.88792   5 0.39709 0.0975 8.089818668, 10.01612548 -0.5
BXD33 m 10.233 0.0   1   0.0 0.0 10.23335291, 10.23335291 0.49
BXD34 f 7.225 0.0   1   0.0 0.0 7.225042344, 7.225042344 -1.97
BXD34 m 7.9601 0.0   1   0.0 0.0 7.960127098, 7.960127098 -1.5
BXD39 f 9.9572 1.2876   5 0.57585 0.1293 8.101787949, 11.54642264 0.56
BXD39 m 9.6551 0.87056   5 0.38933 0.0902 8.745071393, 10.59785756 -0.01
BXD40 f 9.863 0.97521   5 0.43613 0.0989 8.976720954, 11.35291737 0.47
BXD40 m 11.532 1.4396   5 0.6438 0.1248 9.488003571, 12.92259791 1.63
BXD42 f 10.457 0.54749   5 0.24485 0.0524 9.84751749, 11.17701915 1.03
BXD42 m 10.328 0.82151   5 0.36739 0.0795 9.393205531, 11.5315694 0.58
BXD43 f 7.7359 1.0129   5 0.45296 0.1309 6.533150396, 9.082915188 -1.5
BXD43 m 7.3515 0.6978   5 0.31207 0.0949 6.561212915, 7.995801053 -2.03
BXD44 f 9.8142 0.33262   5 0.14875 0.0339 9.233878328, 10.01715 0.43
BXD44 m 9.4063 1.2556   5 0.56154 0.1335 7.879634594, 11.36203849 -0.23
BXD48 f 9.7438 1.2227   5 0.54681 0.1255 7.588261348, 10.52539274 0.36
BXD48 m 9.2043 1.3808   5 0.61753 0.15 7.924185539, 11.36312075 -0.41
BXD49 f 10.594 2.1816   4 1.0908 0.2059 7.687355523, 12.97770292 1.15
BXD49 m 10.527 1.3611   5 0.60871 0.1293 8.797878359, 12.14712686 0.75
BXD50 f 8.9173 0.50513   5 0.2259 0.0566 8.281623259, 9.516393868 -0.4
BXD50 m 10.376 0.81242   5 0.36332 0.0783 9.232211863, 11.40921369 0.62
BXD51 f 8.162 0.87806   5 0.39268 0.1076 7.051195852, 9.374590158 -1.1
BXD51 m 8.5 1.1804   5 0.52788 0.1389 7.678989709, 10.58868186 -1.03
BXD6 f 9.2527 0.97095   5 0.43422 0.1049 7.883692214, 10.37428944 -0.09
BXD6 m 11.133 0.52902   4 0.26451 0.0475 10.62583103, 11.71548442 1.28
BXD61 f 11.555 0.46607   5 0.20843 0.0403 10.93278188, 12.15796995 2.05
BXD61 m 11.33 1.211   5 0.54159 0.1069 10.36239856, 13.37693446 1.46
BXD62 f 10.178 1.9709   5 0.88143 0.1936 8.30298292, 13.07634673 0.77
BXD62 m 10.429 1.5505   5 0.69341 0.1487 8.540318125, 11.88928531 0.67
BXD65 f 9.4435 0.88543   3 0.5112 0.0938 8.634614552, 10.38948129 0.09
BXD65 m 10.419 0.79078   5 0.35365 0.0759 9.697131883, 11.38521899 0.66
BXD66 f 7.3269 0.20143   2   0.14243 0.0275 7.184487426, 7.469355647 -1.88
BXD66 m 9.6618 0.62914   2   0.44487 0.0651 9.216954155, 10.10668553 -0.01
BXD68 f 9.8691 0.28304   2   0.20014 0.0287 9.668938875, 10.06921716 0.48
BXD68 m 9.6994 0.77749   3 0.44888 0.0802 8.819974948, 10.29549088 0.03
BXD69 f 9.5335 1.3028   4 0.65138 0.1367 7.958572663, 11.1138332 0.17
BXD69 m 10.491 1.021   5 0.45658 0.0973 9.276751949, 11.93361591 0.72
BXD70 f 10.073 1.3403   5 0.59941 0.1331 8.267845877, 11.72782116 0.67
BXD70 m 10.242 1.3908   5 0.62198 0.1358 8.752434031, 12.17711625 0.5
BXD71 m 8.0316 0.0   1   0.0 0.0 8.031563865, 8.031563865 -1.44
BXD73 f 8.3695 1.5825   5 0.70772 0.1891 6.122475676, 9.565006398 -0.91
BXD73 m 9.5803 1.0676   5 0.47743 0.1114 8.270646184, 10.50516353 -0.08
BXD75 f 8.9466 1.0439   5 0.46685 0.1167 7.628046254, 10.41945339 -0.38
BXD75 m 8.7502 1.7549   5 0.78482 0.2006 6.60264465, 10.88287789 -0.81
BXD77 f 9.9583 2.4683   2   1.7454 0.2479 8.212886511, 11.70362421 0.56
BXD77 m 8.1325 0.83175   2   0.58814 0.1023 7.544347881, 8.720624879 -1.35
BXD8 f 8.8795 1.2919   5 0.57774 0.1455 7.387426278, 10.82899261 -0.44
BXD8 m 9.0056 1.2792   5 0.57206 0.142 6.99293559, 10.04438653 -0.58
BXD80 f 9.1128 0.75499   5 0.33764 0.0828 8.255602713, 10.32209991 -0.22
BXD80 m 9.6367 0.64904   5 0.29026 0.0674 8.760002123, 10.23560352 -0.03
BXD81 f 10.044 1.014   5 0.45348 0.101 8.733503046, 10.91675412 0.64
BXD81 m 9.9389 1.4856   5 0.66437 0.1495 7.340582539, 11.0552955 0.24
BXD84 f 9.567 1.4135   5 0.63216 0.1478 7.733405635, 11.41410661 0.2
BXD84 m 9.7896 0.51144   5 0.22872 0.0522 9.323635989, 10.5324935 0.11
BXD85 f 9.5541 1.5773   2   1.1153 0.1651 8.438751151, 10.66940638 0.19
BXD85 m 9.3889 2.673   2   1.8901 0.2847 7.498828785, 11.27905412 -0.25
BXD86 f 7.6053 1.132   5 0.50625 0.1488 6.079692102, 9.221399536 -1.62
BXD86 m 8.9512 0.53806   4 0.26903 0.0601 8.446119218, 9.697141488 -0.63
BXD87 f 8.6338 0.58781   5 0.26288 0.0681 7.651406465, 9.046460678 -0.67
BXD87 m 8.8333 0.78131   5 0.34941 0.0885 7.935481727, 9.987698949 -0.73
BXD89 f 8.8148 0.32407   5 0.14493 0.0368 8.539779152, 9.353599408 -0.5
BXD89 m 8.6308 0.92178   5 0.41223 0.1068 7.240837306, 9.661789156 -0.91
BXD90 f 8.995 2.9727   3 1.7163 0.3305 5.660210759, 11.3669248 -0.33
BXD90 m 9.3395 0.54921   3 0.31709 0.0588 8.896445018, 9.954001543 -0.29
BXD92 f 10.369 0.0   1   0.0 0.0 10.36928382, 10.36928382 0.94
BXD92 m 12.268 0.0   1   0.0 0.0 12.26786493, 12.26786493 2.28
BXD96 f 8.1565 1.0251   5 0.45844 0.1257 6.4540097, 8.903745199 -1.11
BXD96 m 9.2512 1.0514   5 0.47019 0.1136 7.546540327, 10.27639025 -0.37
BXD97 f 7.3237 1.2457   5 0.55709 0.1701 5.36056994, 8.622089099 -1.88
BXD97 m 8.8452 2.1526   4 1.0763 0.2434 7.21621889, 11.75923536 -0.72
BXD98 f 9.894 2.4887   2   1.7598 0.2515 8.134241911, 11.65379557 0.5
BXD98 m 9.4148 1.3726   4 0.6863 0.1458 7.876958622, 10.94970799 -0.22
C57BL/6J f 11.426 2.0471   5 0.91548 0.1792 9.403216953, 14.42929038 1.93
C57BL/6J m 12.668 1.8339   5 0.82015 0.1448 9.95751345, 14.79225254 2.63
DBA/2J f 9.0043 1.6862   5 0.75407 0.1873 6.511020053, 10.48085682 -0.32
DBA/2J m 8.7004 2.0265   5 0.90627 0.2329 6.145991556, 11.44678099 -0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 7.3809 0.5454 8.4537 6.3082
BXD100 m 8.1593 0.5454 9.2321 7.0866
BXD101 f 9.5857 0.7041 10.9706 8.2008
BXD101 m 9.8392 0.6098 11.0386 8.6399
BXD102 f 11.4005 0.5454 12.4732 10.3277
BXD102 m 11.2509 0.5454 12.3236 10.1781
BXD11 f 9.3215 0.5454 10.3943 8.2488
BXD11 m 8.8877 0.5454 9.9605 7.815
BXD13 f 12.0284 0.5454 13.1011 10.9556
BXD13 m 12.0844 0.5454 13.1572 11.0117
BXD14 f 10.0974 0.5454 11.1701 9.0246
BXD14 m 9.7934 0.5454 10.8661 8.7206
BXD15 f 7.7745 0.5454 8.8472 6.7017
BXD15 m 8.2264 0.5454 9.2991 7.1536
BXD16 f 8.9469 0.5454 10.0196 7.8741
BXD16 m 9.037 0.5454 10.1097 7.9642
BXD2 f 8.568 0.5454 9.6407 7.4952
BXD2 m 8.1439 0.5454 9.2166 7.0711
BXD21 f 9.7149 0.5454 10.7876 8.6421
BXD21 m 9.2288 0.4979 10.208 8.2495
BXD27 f 9.333 0.5454 10.4058 8.2603
BXD27 m 10.0254 0.5454 11.0981 8.9526
BXD28 f 9.605 0.5454 10.6777 8.5322
BXD28 m 9.9058 0.5454 10.9785 8.833
BXD31 f 9.5292 0.5454 10.6019 8.4564
BXD31 m 11.2466 0.6098 12.446 10.0473
BXD32 f 9.8267 0.5454 10.8995 8.754
BXD32 m 9.1047 0.5454 10.1774 8.0319
BXD39 f 9.9572 0.5454 11.03 8.8845
BXD39 m 9.6551 0.5454 10.7278 8.5823
BXD40 f 9.863 0.5454 10.9357 8.7902
BXD40 m 11.532 0.5454 12.6048 10.4593
BXD42 f 10.457 0.5454 11.5298 9.3843
BXD42 m 10.3278 0.5454 11.4005 9.255
BXD43 f 7.7359 0.5454 8.8086 6.6631
BXD43 m 7.3515 0.5454 8.4242 6.2787
BXD44 f 9.8142 0.5454 10.8869 8.7414
BXD44 m 9.4063 0.5454 10.479 8.3335
BXD48 f 9.7438 0.5454 10.8165 8.6711
BXD48 m 9.2043 0.5454 10.2771 8.1316
BXD49 f 10.5936 0.6098 11.793 9.3942
BXD49 m 10.5275 0.5454 11.6002 9.4547
BXD50 f 8.9173 0.5454 9.9901 7.8446
BXD50 m 10.3764 0.5454 11.4492 9.3037
BXD51 f 8.162 0.5454 9.2348 7.0893
BXD51 m 8.5 0.5454 9.5728 7.4273
BXD6 f 9.2527 0.5454 10.3254 8.1799
BXD6 m 11.1328 0.6098 12.3322 9.9335
BXD61 f 11.5549 0.5454 12.6277 10.4822
BXD61 m 11.3303 0.5454 12.403 10.2575
BXD62 f 10.1782 0.5454 11.251 9.1055
BXD62 m 10.4287 0.5454 11.5014 9.3559
BXD65 f 9.4435 0.7041 10.8284 8.0586
BXD65 m 10.4192 0.5454 11.4919 9.3464
BXD66 f 7.3269 0.8624 9.0231 5.6308
BXD66 m 9.6618 0.8624 11.358 7.9657
BXD68 f 9.8691 0.8624 11.5652 8.1729
BXD68 m 9.6994 0.7041 11.0843 8.3145
BXD69 f 9.5335 0.6098 10.7329 8.3341
BXD69 m 10.4911 0.5454 11.5639 9.4184
BXD70 f 10.0735 0.5454 11.1462 9.0007
BXD70 m 10.2424 0.5454 11.3152 9.1697
BXD73 f 8.3695 0.5454 9.4423 7.2968
BXD73 m 9.5803 0.5454 10.6531 8.5076
BXD75 f 8.9466 0.5454 10.0193 7.8738
BXD75 m 8.7502 0.5454 9.8229 7.6774
BXD77 f 9.9583 0.8624 11.6544 8.2621
BXD77 m 8.1325 0.8624 9.8286 6.4363
BXD8 f 8.8795 0.5454 9.9522 7.8067
BXD8 m 9.0056 0.5454 10.0783 7.9328
BXD80 f 9.1128 0.5454 10.1855 8.04
BXD80 m 9.6367 0.5454 10.7095 8.564
BXD81 f 10.044 0.5454 11.1167 8.9712
BXD81 m 9.9389 0.5454 11.0116 8.8662
BXD84 f 9.567 0.5454 10.6397 8.4942
BXD84 m 9.7896 0.5454 10.8623 8.7169
BXD85 f 9.5541 0.8624 11.2502 7.8579
BXD85 m 9.3889 0.8624 11.0851 7.6928
BXD86 f 7.6053 0.5454 8.6781 6.5326
BXD86 m 8.9512 0.6098 10.1506 7.7519
BXD87 f 8.6338 0.5454 9.7065 7.561
BXD87 m 8.8333 0.5454 9.906 7.7605
BXD89 f 8.8148 0.5454 9.8876 7.7421
BXD89 m 8.6308 0.5454 9.7035 7.558
BXD90 f 8.995 0.7041 10.3799 7.61
BXD90 m 9.3395 0.7041 10.7244 7.9546
BXD96 f 8.1565 0.5454 9.2292 7.0837
BXD96 m 9.2512 0.5454 10.3239 8.1784
BXD97 f 7.3237 0.5454 8.3964 6.2509
BXD97 m 8.8452 0.6098 10.0446 7.6459
BXD98 f 9.894 0.8624 11.5902 8.1979
BXD98 m 9.4148 0.6098 10.6141 8.2154
C57BL/6J f 11.4257 0.5454 12.4984 10.3529
C57BL/6J m 12.6675 0.5454 13.7403 11.5948
DBA/2J f 9.0043 0.5454 10.0771 7.9316
DBA/2J m 8.7004 0.5454 9.7732 7.6277


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 7.7701 0.3857 8.5287 7.0116
BXD101 both 9.7125 0.4657 10.6285 8.7964
BXD102 both 11.3257 0.3857 12.0842 10.5671
BXD11 both 9.1046 0.3857 9.8632 8.3461
BXD13 both 12.0564 0.3857 12.815 11.2979
BXD14 both 9.9454 0.3857 10.7039 9.1868
BXD15 both 8.0004 0.3857 8.759 7.2419
BXD16 both 8.9919 0.3857 9.7505 8.2334
BXD2 both 8.3559 0.3857 9.1145 7.5974
BXD21 both 9.4718 0.3692 10.1981 8.7456
BXD27 both 9.6792 0.3857 10.4377 8.9206
BXD28 both 9.7554 0.3857 10.5139 8.9968
BXD31 both 10.3879 0.409 11.1925 9.5833
BXD32 both 9.4657 0.3857 10.2242 8.7072
BXD39 both 9.8062 0.3857 10.5647 9.0476
BXD40 both 10.6975 0.3857 11.456 9.9389
BXD42 both 10.3924 0.3857 11.1509 9.6338
BXD43 both 7.5437 0.3857 8.3022 6.7851
BXD44 both 9.6102 0.3857 10.3688 8.8517
BXD48 both 9.4741 0.3857 10.2326 8.7155
BXD49 both 10.5605 0.409 11.3651 9.756
BXD50 both 9.6469 0.3857 10.4054 8.8883
BXD51 both 8.331 0.3857 9.0896 7.5725
BXD6 both 10.1927 0.409 10.9973 9.3882
BXD61 both 11.4426 0.3857 12.2011 10.684
BXD62 both 10.3035 0.3857 11.062 9.5449
BXD65 both 9.9313 0.4453 10.8072 9.0554
BXD66 both 8.4944 0.6098 9.6937 7.295
BXD68 both 9.7842 0.5566 10.8791 8.6894
BXD69 both 10.0123 0.409 10.8169 9.2078
BXD70 both 10.158 0.3857 10.9165 9.3994
BXD73 both 8.9749 0.3857 9.7335 8.2164
BXD75 both 8.8484 0.3857 9.6069 8.0898
BXD77 both 9.0454 0.6098 10.2447 7.846
BXD8 both 8.9425 0.3857 9.7011 8.184
BXD80 both 9.3748 0.3857 10.1333 8.6162
BXD81 both 9.9914 0.3857 10.75 9.2329
BXD84 both 9.6783 0.3857 10.4368 8.9198
BXD85 both 9.4715 0.6098 10.6709 8.2721
BXD86 both 8.2783 0.409 9.0828 7.4737
BXD87 both 8.7335 0.3857 9.4921 7.975
BXD89 both 8.7228 0.3857 9.4813 7.9643
BXD90 both 9.1672 0.4979 10.1465 8.188
BXD96 both 8.7038 0.3857 9.4624 7.9453
BXD97 both 8.0845 0.409 8.889 7.2799
BXD98 both 9.6544 0.5281 10.6931 8.6157
C57BL/6J both 12.0466 0.3857 12.8051 11.2881
DBA/2J both 8.8524 0.3857 9.6109 8.0938




  GWAS USING LINEAR MIXED MODELS

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