Project measure / variable:   Kliethermes1   distance_HD

ID, description, units MPD:59931   distance_HD   distance traveled in head dip task to assess novelty seeking, 10 min test   [cm]  
Data set, strains Kliethermes1   inbred   14 strains     sex: both     age: 8wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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Kliethermes1 - distance traveled in head dip task to assess novelty seeking, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means2382   cm 2395   cm
Median of the strain means2148   cm 2324   cm
SD of the strain means± 1267 ± 1070
Coefficient of variation (CV)0.532 0.447
Min–max range of strain means170   –   4749   cm 488   –   4100   cm
Mean sample size per strain6.3   mice 6.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 19881.3387 19881.3387 0.06 0.8069
strain 13 198273882.8733 15251837.1441 46.0009 < 0.0001
sex:strain 13 15514829.6896 1193448.4377 3.5996 0.0001
Residuals 158 52385673.7078 331554.8969


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1266.0 775.0   6 316.0 0.612 315.0, 2406.0 -0.88
129S1/SvImJ m 2247.0 353.0   6 144.0 0.157 1771.0, 2711.0 -0.14
A/J f 170.0 151.0   6 61.8 0.893 53.5, 454.0 -1.75
A/J m 488.0 118.0   6 48.4 0.243 360.0, 642.0 -1.78
AKR/J f 2054.0 461.0   6 188.0 0.225 1350.0, 2626.0 -0.26
AKR/J m 2392.0 434.0   5 194.0 0.182 1778.0, 2829.0 0.0
BALB/cByJ f 2022.0 712.0   5 319.0 0.352 1247.0, 2630.0 -0.28
BALB/cByJ m 1040.0 626.0   6 255.0 0.602 67.5, 1686.0 -1.27
BTBR T+ Itpr3tf/J f 2680.0 721.0   6 294.0 0.269 1613.0, 3848.0 0.24
BTBR T+ Itpr3tf/J m 3493.0 1022.0   6 417.0 0.293 2030.0, 4671.0 1.03
C3H/HeJ f 2242.0 585.0   6 239.0 0.261 1185.0, 2756.0 -0.11
C3H/HeJ m 1813.0 270.0   6 110.0 0.149 1335.0, 2091.0 -0.54
C57BL/6J f 3187.0 444.0   12 128.0 0.139 2495.0, 4176.0 0.64
C57BL/6J m 2823.0 442.0   12 128.0 0.157 2177.0, 3419.0 0.4
C57L/J f 4132.0 260.0   6 106.0 0.063 3789.0, 4382.0 1.38
C57L/J m 4100.0 705.0   6 288.0 0.172 3207.0, 5203.0 1.59
DBA/2J f 1675.0 455.0   12 131.0 0.271 1040.0, 2400.0 -0.56
DBA/2J m 2256.0 633.0   12 183.0 0.281 1311.0, 3259.0 -0.13
FVB/NJ f 4749.0 920.0   5 412.0 0.194 3838.0, 5927.0 1.87
FVB/NJ m 3777.0 243.0   5 109.0 0.0644 3415.0, 4076.0 1.29
NOD/ShiLtJ f 4027.0 934.0   6 381.0 0.232 2583.0, 5057.0 1.3
NOD/ShiLtJ m 3475.0 459.0   6 187.0 0.132 2914.0, 4142.0 1.01
NZB/BlNJ f 1528.0 1051.0   6 429.0 0.688 248.0, 2885.0 -0.67
NZB/BlNJ m 2012.0 471.0   6 192.0 0.234 1297.0, 2482.0 -0.36
PERA/EiJ f 1321.0 176.0   5 78.5 0.133 1138.0, 1536.0 -0.84
PERA/EiJ m 1170.0 335.0   6 137.0 0.287 764.0, 1563.0 -1.15
PL/J f 2290.0 183.0   6 74.8 0.08 2043.0, 2507.0 -0.07
PL/J m 2444.0 794.0   5 355.0 0.325 1446.0, 3321.0 0.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1266.25 235.0726 1730.5401 801.9599
129S1/SvImJ m 2246.6 235.0726 2710.8901 1782.3099
A/J f 169.55 235.0726 633.8401 -294.7401
A/J m 487.9167 235.0726 952.2068 23.6265
AKR/J f 2053.9833 235.0726 2518.2735 1589.6932
AKR/J m 2391.84 257.5092 2900.4443 1883.2357
BALB/cByJ f 2021.86 257.5092 2530.4643 1513.2557
BALB/cByJ m 1040.0833 235.0726 1504.3735 575.7932
BTBR T+ Itpr3tf/J f 2680.4333 235.0726 3144.7235 2216.1432
BTBR T+ Itpr3tf/J m 3492.95 235.0726 3957.2401 3028.6599
C3H/HeJ f 2242.0 235.0726 2706.2901 1777.7099
C3H/HeJ m 1813.1667 235.0726 2277.4568 1348.8765
C57BL/6J f 3186.825 166.2215 3515.1277 2858.5223
C57BL/6J m 2823.45 166.2215 3151.7527 2495.1473
C57L/J f 4131.6833 235.0726 4595.9735 3667.3932
C57L/J m 4100.45 235.0726 4564.7401 3636.1599
DBA/2J f 1674.675 166.2215 2002.9777 1346.3723
DBA/2J m 2256.475 166.2215 2584.7777 1928.1723
FVB/NJ f 4749.02 257.5092 5257.6243 4240.4157
FVB/NJ m 3777.28 257.5092 4285.8843 3268.6757
NOD/ShiLtJ f 4026.6167 235.0726 4490.9068 3562.3265
NOD/ShiLtJ m 3474.7667 235.0726 3939.0568 3010.4765
NZB/BlNJ f 1527.75 235.0726 1992.0401 1063.4599
NZB/BlNJ m 2012.1167 235.0726 2476.4068 1547.8265
PERA/EiJ f 1321.3 257.5092 1829.9043 812.6957
PERA/EiJ m 1169.8 235.0726 1634.0901 705.5099
PL/J f 2290.4333 235.0726 2754.7235 1826.1432
PL/J m 2444.46 257.5092 2953.0643 1935.8557


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1756.425 166.2215 2084.7277 1428.1223
A/J both 328.7333 166.2215 657.036 0.4306
AKR/J both 2222.9117 174.3345 2567.2384 1878.5849
BALB/cByJ both 1530.9717 174.3345 1875.2984 1186.6449
BTBR T+ Itpr3tf/J both 3086.6917 166.2215 3414.9944 2758.389
C3H/HeJ both 2027.5833 166.2215 2355.886 1699.2806
C57BL/6J both 3005.1375 117.5363 3237.2826 2772.9924
C57L/J both 4116.0667 166.2215 4444.3694 3787.764
DBA/2J both 1965.575 117.5363 2197.7201 1733.4299
FVB/NJ both 4263.15 182.0865 4622.7876 3903.5124
NOD/ShiLtJ both 3750.6917 166.2215 4078.9944 3422.389
NZB/BlNJ both 1769.9333 166.2215 2098.236 1441.6306
PERA/EiJ both 1245.55 174.3345 1589.8768 901.2232
PL/J both 2367.4467 174.3345 2711.7734 2023.1199




  GWAS USING LINEAR MIXED MODELS