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Project measure / variable:   Loos2   onshelter_anticipation_DK

ID, description, units MPD:54036   onshelter_anticipation_DK   change in OnShelter zone duration: anticipation of phase change, over 3 days of testing    during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - change in OnShelter zone duration: anticipation of phase change, over 3 days of testing during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means-0.00293   None
Median of the strain means0.00258   None
SD of the strain means± 0.0173
Coefficient of variation (CV)-5.92
Min–max range of strain means-0.0448   –   0.0141   None
Mean sample size per strain30.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 0.0602 0.006 1.6301 0.0961
Residuals 377 1.3933 0.0037


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.00769 0.0503   51 0.00704 6.54 -0.055, 0.331 0.61
A/J m 0.00626 0.0448   21 0.00977 7.15 -0.138, 0.11 0.53
BALB/cByJ m -0.00761 0.0342   44 0.00516 -4.5 -0.138, 0.0705 -0.27
C3H/HeJ m -0.00628 0.0606   27 0.0117 -9.65 -0.131, 0.147 -0.19
C57BL/6J m -0.00206 0.0808   104 0.00793 -39.2 -0.52, 0.406 0.05
CAST/EiJ m 0.0121 0.0485   14 0.013 3.99 -0.0541, 0.105 0.87
DBA/2J m -0.0219 0.0656   27 0.0126 -3.0 -0.28, 0.0722 -1.09
FVB/NJ m 0.0141 0.0568   36 0.00946 4.02 -0.151, 0.153 0.98
NOD/ShiLtJ m 0.00258 0.0292   37 0.00481 11.3 -0.0805, 0.0786 0.32
PWK/PhJ m -0.0448 0.0685   15 0.0177 -1.53 -0.178, 0.0433 -2.42
WSB/EiJ m 0.00771 0.0714   12 0.0206 9.26 -0.0972, 0.191 0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.0077 0.0085 0.0244 -0.009
A/J m 0.0063 0.0133 0.0323 -0.0198
BALB/cByJ m -0.0076 0.0092 0.0104 -0.0256
C3H/HeJ m -0.0063 0.0117 0.0167 -0.0293
C57BL/6J m -0.0021 0.006 0.0097 -0.0138
CAST/EiJ m 0.0121 0.0162 0.0441 -0.0198
DBA/2J m -0.0219 0.0117 0.0011 -0.0449
FVB/NJ m 0.0141 0.0101 0.034 -0.0058
NOD/ShiLtJ m 0.0026 0.01 0.0222 -0.0171
PWK/PhJ m -0.0448 0.0157 -0.0139 -0.0756
WSB/EiJ m 0.0077 0.0175 0.0422 -0.0268




  GWAS USING LINEAR MIXED MODELS