Project measure / variable:   Chen1   pct_iNKT_T_pb

ID, description, units MPD:52301   pct_iNKT_T_pb   percentage of total TCRβ+ cells that are invariant NK T cells, peripheral blood   [%]  
Data set, strains Chen1   inbred   38 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
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Chen1 - percentage of total TCRβ+ cells that are invariant NK T cells, peripheral blood



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested38 strains
Mean of the strain means0.596   %
Median of the strain means0.417   %
SD of the strain means± 0.580
Coefficient of variation (CV)0.974
Min–max range of strain means0.0104   –   3.22   %
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 37 50.5623 1.3665 64.9602 < 0.0001
Residuals 122 2.5665 0.021


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.15 0.165   4 0.0826 0.144 0.99, 1.38 0.96
129X1/SvJ m 0.645 0.187   4 0.0937 0.29 0.44, 0.89 0.09
A/J m 0.405 0.058   4 0.029 0.143 0.36, 0.49 -0.33
AKR/J m 0.43 0.163   4 0.0815 0.379 0.26, 0.65 -0.29
ALR/LtJ m 0.272 0.0695   4 0.0347 0.255 0.17, 0.32 -0.56
BALB/cByJ m 1.21 0.303   4 0.151 0.251 0.84, 1.57 1.06
BALB/cJ m 0.375 0.0695   4 0.0348 0.185 0.31, 0.47 -0.38
BPL/1J m 3.22 0.422   4 0.211 0.131 2.74, 3.7 4.52
BTBR T+ Itpr3tf/J m 0.37 0.151   4 0.0756 0.409 0.25, 0.58 -0.39
BUB/BnJ m 0.643 0.282   4 0.141 0.439 0.4, 1.05 0.08
C3H/HeJ m 0.273 0.0386   4 0.0193 0.142 0.25, 0.33 -0.56
C57BL/10J m 0.258 0.0563   5 0.0252 0.218 0.2, 0.35 -0.58
C57BL/6J m 0.36 0.116   4 0.0582 0.323 0.28, 0.53 -0.41
C57BLKS/J m 0.282 0.00957   4 0.00479 0.0339 0.27, 0.29 -0.54
C57L/J m 0.924 0.173   5 0.0773 0.187 0.79, 1.21 0.57
CAST/EiJ m 0.076 0.029   4 0.0145 0.382 0.041, 0.11 -0.9
CBA/J m 1.04 0.0947   4 0.0473 0.0906 0.92, 1.14 0.77
DBA/1LacJ m 0.588 0.275   4 0.138 0.468 0.27, 0.86 -0.01
DBA/2J m 0.282 0.0249   5 0.0111 0.0883 0.25, 0.32 -0.54
FVB/NJ m 0.462 0.0299   4 0.0149 0.0646 0.43, 0.5 -0.23
ICR/HaJ m 1.01 0.0896   4 0.0448 0.0889 0.92, 1.13 0.71
KK/HlJ m 1.07 0.109   5 0.0489 0.102 0.96, 1.21 0.82
LP/J m 0.507 0.0568   4 0.0284 0.112 0.45, 0.57 -0.15
MOLF/EiJ m 0.213 0.034   4 0.017 0.16 0.18, 0.26 -0.66
MRL/MpJ m 0.234 0.0251   5 0.0112 0.107 0.2, 0.27 -0.62
MSM/MsJ m 0.0104 0.00181   4 0.000904 0.173 0.00875, 0.013 -1.01
NOD/LtDVS m 0.25 0.048   5 0.0214 0.192 0.18, 0.3 -0.6
NON/ShiLtJ m 0.85 0.171   4 0.0857 0.202 0.6, 0.99 0.44
NZB/BlNJ m 1.79 0.333   4 0.166 0.186 1.3, 2.0 2.06
NZO/HlLtJ m 0.575 0.154   4 0.0768 0.267 0.38, 0.74 -0.04
NZW/LacJ m 0.815 0.142   4 0.0708 0.174 0.69, 0.97 0.38
PL/J m 0.22 0.0141   4 0.00707 0.0643 0.21, 0.24 -0.65
PWD/PhJ m 0.0338 0.0045   4 0.00225 0.133 0.028, 0.039 -0.97
SJL/J m 0.314 0.0764   5 0.0341 0.243 0.22, 0.41 -0.49
SM/J m 0.53 0.0711   5 0.0318 0.134 0.46, 0.63 -0.11
SPRET/EiJ m 0.0858 0.0298   4 0.0149 0.348 0.068, 0.13 -0.88
SWR/J m 0.497 0.031   4 0.0155 0.0622 0.47, 0.54 -0.17
WSB/EiJ m 0.363 0.0525   4 0.0263 0.145 0.29, 0.41 -0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.1475 0.0725 1.2911 1.0039
129X1/SvJ m 0.645 0.0725 0.7886 0.5014
A/J m 0.405 0.0725 0.5486 0.2614
AKR/J m 0.43 0.0725 0.5736 0.2864
ALR/LtJ m 0.2725 0.0725 0.4161 0.1289
BALB/cByJ m 1.205 0.0725 1.3486 1.0614
BALB/cJ m 0.375 0.0725 0.5186 0.2314
BPL/1J m 3.215 0.0725 3.3586 3.0714
BTBR T+ Itpr3tf/J m 0.37 0.0725 0.5136 0.2264
BUB/BnJ m 0.6425 0.0725 0.7861 0.4989
C3H/HeJ m 0.2725 0.0725 0.4161 0.1289
C57BL/10J m 0.258 0.0649 0.3864 0.1296
C57BL/6J m 0.36 0.0725 0.5036 0.2164
C57BLKS/J m 0.2825 0.0725 0.4261 0.1389
C57L/J m 0.924 0.0649 1.0524 0.7956
CAST/EiJ m 0.076 0.0725 0.2196 0.0
CBA/J m 1.045 0.0725 1.1886 0.9014
DBA/1LacJ m 0.5875 0.0725 0.7311 0.4439
DBA/2J m 0.282 0.0649 0.4104 0.1536
FVB/NJ m 0.4625 0.0725 0.6061 0.3189
ICR/HaJ m 1.0075 0.0725 1.1511 0.8639
KK/HlJ m 1.074 0.0649 1.2024 0.9456
LP/J m 0.5075 0.0725 0.6511 0.3639
MOLF/EiJ m 0.2125 0.0725 0.3561 0.0689
MRL/MpJ m 0.234 0.0649 0.3624 0.1056
MSM/MsJ m 0.0104 0.0725 0.154 0.0
NOD/LtDVS m 0.25 0.0649 0.3784 0.1216
NON/ShiLtJ m 0.85 0.0725 0.9936 0.7064
NZB/BlNJ m 1.7875 0.0725 1.9311 1.6439
NZO/HlLtJ m 0.575 0.0725 0.7186 0.4314
NZW/LacJ m 0.815 0.0725 0.9586 0.6714
PL/J m 0.22 0.0725 0.3636 0.0764
PWD/PhJ m 0.0337 0.0725 0.1773 0.0
SJL/J m 0.314 0.0649 0.4424 0.1856
SM/J m 0.53 0.0649 0.6584 0.4016
SPRET/EiJ m 0.0857 0.0725 0.2293 0.0
SWR/J m 0.4975 0.0725 0.6411 0.3539
WSB/EiJ m 0.3625 0.0725 0.5061 0.2189




  GWAS USING LINEAR MIXED MODELS