Project measure / variable:   HMDPpheno6   IB_carnitine

ID, description, units MPD:50168   IB_carnitine   liver isobutyrylcarnitine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver isobutyrylcarnitine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means138037   None
Median of the strain means125619   None
SD of the strain means± 70517
Coefficient of variation (CV)0.511
Min–max range of strain means39953   –   562602   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 106314298012.403 5062585619.6382 2.1639 0.0219
Residuals 34 79545603726.3587 2339576580.187


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 76474.0 0.0   1   0.0 0.0 76474.0, 76474.0 -0.87
A/J m 110816.0 10795.0   2   7634.0 0.0974 103183.0, 118450.0 -0.39
AKR/J m 112379.0 0.0   1   0.0 0.0 112379.0, 112379.0 -0.36
AXB10/PgnJ m 130810.0 0.0   1   0.0 0.0 130810.0, 130810.0 -0.1
AXB12/PgnJ m 100321.0 0.0   1   0.0 0.0 100321.0, 100321.0 -0.53
AXB13/PgnJ m 82443.0 0.0   1   0.0 0.0 82443.0, 82443.0 -0.79
AXB15/PgnJ m 151828.0 0.0   1   0.0 0.0 151828.0, 151828.0 0.2
AXB19a/PgnJ m 134886.0 0.0   1   0.0 0.0 134886.0, 134886.0 -0.04
AXB19b/PgnJ m 209941.0 22005.0   2   15560.0 0.105 194382.0, 225501.0 1.02
AXB19/PgnJ m 140836.0 0.0   1   0.0 0.0 140836.0, 140836.0 0.04
AXB1/PgnJ m 237412.0 0.0   1   0.0 0.0 237412.0, 237412.0 1.41
AXB23/PgnJ m 83552.0 0.0   1   0.0 0.0 83552.0, 83552.0 -0.77
AXB24/PgnJ m 71034.0 7992.0   2   5651.0 0.113 65382.0, 76685.0 -0.95
AXB2/PgnJ m 76467.0 0.0   1   0.0 0.0 76467.0, 76467.0 -0.87
AXB4/PgnJ m 181078.0 0.0   1   0.0 0.0 181078.0, 181078.0 0.61
AXB5/PgnJ m 78889.0 0.0   1   0.0 0.0 78889.0, 78889.0 -0.84
AXB6/PgnJ m 90285.0 0.0   1   0.0 0.0 90285.0, 90285.0 -0.68
AXB8/PgnJ m 84738.0 0.0   1   0.0 0.0 84738.0, 84738.0 -0.76
BALB/cJ m 111162.0 37706.0   3 21769.0 0.339 86429.0, 154560.0 -0.38
BTBR T+ Itpr3tf/J m 88734.0 0.0   1   0.0 0.0 88734.0, 88734.0 -0.7
BUB/BnJ m 233753.0 0.0   1   0.0 0.0 233753.0, 233753.0 1.36
BXA11/PgnJ m 142788.0 0.0   1   0.0 0.0 142788.0, 142788.0 0.07
BXA12/PgnJ m 103644.0 0.0   1   0.0 0.0 103644.0, 103644.0 -0.49
BXA13/PgnJ m 93612.0 0.0   1   0.0 0.0 93612.0, 93612.0 -0.63
BXA14/PgnJ m 55723.0 0.0   1   0.0 0.0 55723.0, 55723.0 -1.17
BXA16/PgnJ m 133977.0 22779.0   2   16107.0 0.17 117870.0, 150084.0 -0.06
BXA1/PgnJ m 68500.0 0.0   1   0.0 0.0 68500.0, 68500.0 -0.99
BXA24/PgnJ m 117192.0 0.0   1   0.0 0.0 117192.0, 117192.0 -0.3
BXA25/PgnJ m 87233.0 0.0   1   0.0 0.0 87233.0, 87233.0 -0.72
BXA26/PgnJ m 199423.0 0.0   1   0.0 0.0 199423.0, 199423.0 0.87
BXA2/PgnJ m 134996.0 0.0   1   0.0 0.0 134996.0, 134996.0 -0.04
BXA4/PgnJ m 134478.0 0.0   1   0.0 0.0 134478.0, 134478.0 -0.05
BXA7/PgnJ m 153781.0 0.0   1   0.0 0.0 153781.0, 153781.0 0.22
BXA8/PgnJ m 48099.0 0.0   1   0.0 0.0 48099.0, 48099.0 -1.28
BXD11/TyJ m 165444.0 0.0   1   0.0 0.0 165444.0, 165444.0 0.39
BXD12/TyJ m 178467.0 0.0   1   0.0 0.0 178467.0, 178467.0 0.57
BXD13/TyJ m 183487.0 0.0   1   0.0 0.0 183487.0, 183487.0 0.64
BXD14/TyJ m 108217.0 0.0   1   0.0 0.0 108217.0, 108217.0 -0.42
BXD15/TyJ m 282946.0 0.0   1   0.0 0.0 282946.0, 282946.0 2.05
BXD18/TyJ m 87015.0 0.0   1   0.0 0.0 87015.0, 87015.0 -0.72
BXD19/TyJ m 161183.0 42299.0   2   29910.0 0.262 131273.0, 191094.0 0.33
BXD1/TyJ m 136242.0 0.0   1   0.0 0.0 136242.0, 136242.0 -0.03
BXD20/TyJ m 283567.0 0.0   1   0.0 0.0 283567.0, 283567.0 2.06
BXD21/TyJ m 123101.0 0.0   1   0.0 0.0 123101.0, 123101.0 -0.21
BXD22/TyJ m 162242.0 0.0   1   0.0 0.0 162242.0, 162242.0 0.34
BXD24/TyJ m 158612.0 0.0   1   0.0 0.0 158612.0, 158612.0 0.29
BXD24/TyJ-Cep290rd16/J m 232816.0 0.0   1   0.0 0.0 232816.0, 232816.0 1.34
BXD28/TyJ m 161228.0 18439.0   2   13038.0 0.114 148190.0, 174266.0 0.33
BXD29-Tlr4lps-2J/J m 162371.0 0.0   1   0.0 0.0 162371.0, 162371.0 0.35
BXD2/TyJ m 274244.0 0.0   1   0.0 0.0 274244.0, 274244.0 1.93
BXD32/TyJ m 198315.0 0.0   1   0.0 0.0 198315.0, 198315.0 0.85
BXD33/TyJ m 220407.0 0.0   1   0.0 0.0 220407.0, 220407.0 1.17
BXD34/TyJ m 206408.0 0.0   1   0.0 0.0 206408.0, 206408.0 0.97
BXD36/TyJ m 250753.0 0.0   1   0.0 0.0 250753.0, 250753.0 1.6
BXD38/TyJ m 153211.0 0.0   1   0.0 0.0 153211.0, 153211.0 0.22
BXD39/TyJ m 168990.0 0.0   1   0.0 0.0 168990.0, 168990.0 0.44
BXD40/TyJ m 162248.0 0.0   1   0.0 0.0 162248.0, 162248.0 0.34
BXD42/TyJ m 247555.0 0.0   1   0.0 0.0 247555.0, 247555.0 1.55
BXD5/TyJ m 138761.0 0.0   1   0.0 0.0 138761.0, 138761.0 0.01
BXD6/TyJ m 155760.0 0.0   1   0.0 0.0 155760.0, 155760.0 0.25
BXD8/TyJ m 207772.0 0.0   1   0.0 0.0 207772.0, 207772.0 0.99
BXD9/TyJ m 235238.0 0.0   1   0.0 0.0 235238.0, 235238.0 1.38
BXH10/TyJ m 110350.0 0.0   1   0.0 0.0 110350.0, 110350.0 -0.39
BXH19/TyJ m 170122.0 0.0   1   0.0 0.0 170122.0, 170122.0 0.46
BXH20/KccJ m 117205.0 0.0   1   0.0 0.0 117205.0, 117205.0 -0.3
BXH22/KccJ m 98521.0 0.0   1   0.0 0.0 98521.0, 98521.0 -0.56
BXH2/TyJ m 93186.0 0.0   1   0.0 0.0 93186.0, 93186.0 -0.64
BXH4/TyJ m 88387.0 51487.0   2   36407.0 0.583 51980.0, 124794.0 -0.7
BXH6/TyJ m 137636.0 0.0   1   0.0 0.0 137636.0, 137636.0 -0.01
BXH7/TyJ m 156553.0 0.0   1   0.0 0.0 156553.0, 156553.0 0.26
BXH8/TyJ m 116264.0 0.0   1   0.0 0.0 116264.0, 116264.0 -0.31
BXH9/TyJ m 233937.0 0.0   1   0.0 0.0 233937.0, 233937.0 1.36
C3H/HeJ m 119247.0 50902.0   2   35993.0 0.427 83253.0, 155240.0 -0.27
C57BL/6J m 175119.0 69077.0   5 30892.0 0.394 104762.0, 262482.0 0.53
C57L/J m 120913.0 0.0   1   0.0 0.0 120913.0, 120913.0 -0.24
C58/J m 562602.0 0.0   1   0.0 0.0 562602.0, 562602.0 6.02
CAST/EiJ m 125337.0 0.0   1   0.0 0.0 125337.0, 125337.0 -0.18
CBA/J m 39953.0 0.0   1   0.0 0.0 39953.0, 39953.0 -1.39
CE/J m 63969.0 0.0   1   0.0 0.0 63969.0, 63969.0 -1.05
CXB11/HiAJ m 104743.0 32817.0   2   23205.0 0.313 81538.0, 127949.0 -0.47
CXB12/HiAJ m 240101.0 126106.0   2   89171.0 0.525 150930.0, 329271.0 1.45
CXB13/HiAJ m 134364.0 15331.0   3 8851.0 0.114 117165.0, 146592.0 -0.05
CXB1/ByJ m 59789.0 10240.0   3 5912.0 0.171 51822.0, 71339.0 -1.11
CXB2/ByJ m 136672.0 80371.0   3 46402.0 0.588 80346.0, 228710.0 -0.02
CXB3/ByJ m 113115.0 14891.0   2   10530.0 0.132 102585.0, 123644.0 -0.35
CXB4/ByJ m 89276.0 35412.0   2   25040.0 0.397 64236.0, 114315.0 -0.69
CXB6/ByJ m 150507.0 24293.0   3 14026.0 0.161 122536.0, 166334.0 0.18
CXB7/ByJ m 74539.0 18685.0   2   13212.0 0.251 61327.0, 87752.0 -0.9
CXB8/HiAJ m 71140.0 31873.0   3 18402.0 0.448 34998.0, 95228.0 -0.95
CXB9/HiAJ m 101686.0 76151.0   3 43966.0 0.749 46391.0, 188544.0 -0.52
DBA/2J m 155887.0 24814.0   4 12407.0 0.159 137042.0, 189961.0 0.25
FVB/NJ m 195271.0 0.0   1   0.0 0.0 195271.0, 195271.0 0.81
I/LnJ m 59330.0 0.0   1   0.0 0.0 59330.0, 59330.0 -1.12
KK/HlJ m 56434.0 0.0   1   0.0 0.0 56434.0, 56434.0 -1.16
LG/J m 71109.0 0.0   1   0.0 0.0 71109.0, 71109.0 -0.95
LP/J m 92933.0 0.0   1   0.0 0.0 92933.0, 92933.0 -0.64
MA/MyJ m 100690.0 0.0   1   0.0 0.0 100690.0, 100690.0 -0.53
NOD/ShiLtJ m 122380.0 0.0   1   0.0 0.0 122380.0, 122380.0 -0.22
NON/ShiLtJ m 67935.0 0.0   1   0.0 0.0 67935.0, 67935.0 -0.99
NZW/LacJ m 76414.0 0.0   1   0.0 0.0 76414.0, 76414.0 -0.87
PL/J m 125901.0 0.0   1   0.0 0.0 125901.0, 125901.0 -0.17
RIIIS/J m 72152.0 0.0   1   0.0 0.0 72152.0, 72152.0 -0.93
SEA/GnJ m 49462.0 0.0   1   0.0 0.0 49462.0, 49462.0 -1.26
SJL/J m 88321.0 0.0   1   0.0 0.0 88321.0, 88321.0 -0.71
SM/J m 127474.0 0.0   1   0.0 0.0 127474.0, 127474.0 -0.15
SWR/J m 97098.0 0.0   1   0.0 0.0 97098.0, 97098.0 -0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 110816.25 34202.1679 180323.418 41309.082
AXB19b/PgnJ m 209941.4 34202.1679 279448.568 140434.232
AXB24/PgnJ m 71033.7 34202.1679 140540.868 1526.532
BALB/cJ m 111162.0667 27925.9532 167914.4316 54409.7017
BXA16/PgnJ m 133977.3 34202.1679 203484.468 64470.132
BXD19/TyJ m 161183.35 34202.1679 230690.518 91676.182
BXD28/TyJ m 161227.9 34202.1679 230735.068 91720.732
BXH4/TyJ m 88387.05 34202.1679 157894.218 18879.882
C3H/HeJ m 119246.65 34202.1679 188753.818 49739.482
C57BL/6J m 175118.54 21631.3503 219078.7329 131158.3471
CXB11/HiAJ m 104743.2 34202.1679 174250.368 35236.032
CXB12/HiAJ m 240100.7 34202.1679 309607.868 170593.532
CXB13/HiAJ m 134364.0 27925.9532 191116.365 77611.635
CXB1/ByJ m 59789.4 27925.9532 116541.765 3037.035
CXB2/ByJ m 136671.5667 27925.9532 193423.9316 79919.2017
CXB3/ByJ m 113114.6 34202.1679 182621.768 43607.432
CXB4/ByJ m 89275.5 34202.1679 158782.668 19768.332
CXB6/ByJ m 150507.1 27925.9532 207259.465 93754.735
CXB7/ByJ m 74539.2 34202.1679 144046.368 5032.032
CXB8/HiAJ m 71139.8333 27925.9532 127892.1983 14387.4684
CXB9/HiAJ m 101686.3667 27925.9532 158438.7316 44934.0017
DBA/2J m 155887.0 24184.5849 205035.9898 106738.0102




  GWAS USING LINEAR MIXED MODELS