Project measure / variable:   HMDPpheno6   HV_carnitine

ID, description, units MPD:50167   HV_carnitine   liver hydroxyisovaleroyl carnitine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   104 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver hydroxyisovaleroyl carnitine (16h fast), relative abundance

FVB/NJAXB2/PgnJAXB1/PgnJC58/JBXD34/TyJBUB/BnJBXH7/TyJBXD33/TyJCXB13/HiAJBXD12/TyJLP/JI/LnJMA/MyJC57L/JCBA/JAXB19b/PgnJBXD22/TyJNON/ShiLtJBXD8/TyJBXD1/TyJAKR/JNOD/ShiLtJBXA16/PgnJSJL/JBXA7/PgnJA/JCXB1/ByJBXA13/PgnJCE/JBXD40/TyJBXD20/TyJAXB19a/PgnJCXB12/HiAJBXD18/TyJBXD38/TyJC57BL/6JBXD21/TyJBTBR T<+> Itpr3<tf>/JBXA26/PgnJBXH6/TyJBXD32/TyJAXB24/PgnJC3H/HeJCXB6/ByJPL/JCAST/EiJAXB4/PgnJBXD28/TyJAXB6/PgnJAXB8/PgnJBXD42/TyJ129X1/SvJBXA24/PgnJAXB5/PgnJBXH19/TyJCXB8/HiAJBXD6/TyJBXA12/PgnJBXA25/PgnJAXB12/PgnJAXB15/PgnJAXB19/PgnJBXH10/TyJCXB2/ByJNZW/LacJSWR/JBALB/cJBXH4/TyJBXD24/TyJBXH2/TyJBXH22/KccJLG/JDBA/2JBXD5/TyJBXD36/TyJBXA1/PgnJBXD11/TyJAXB23/PgnJAXB13/PgnJBXA2/PgnJRIIIS/JCXB11/HiAJCXB3/ByJBXD13/TyJBXD29-Tlr4<lps-2J>/JAXB10/PgnJBXA4/PgnJKK/HlJBXH20/KccJBXD24/TyJ-Cep290<rd16>/JBXH8/TyJSEA/GnJBXD19/TyJBXD15/TyJBXA14/PgnJBXD14/TyJCXB7/ByJBXD2/TyJBXD9/TyJCXB9/HiAJBXA11/PgnJCXB4/ByJBXD39/TyJBXA8/PgnJ (no units) 100,000200,000300,000400,000500,000600,000700,000800,000900,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested104 strains
Mean of the strain means274211   None
Median of the strain means260404   None
SD of the strain means± 107935
Coefficient of variation (CV)0.394
Min–max range of strain means116484   –   929090   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 227131715677.627 11356585783.8814 1.7083 0.0859
Residuals 32 212727239307.254 6647726228.3517


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 104 (104)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 260542.0 0.0   1   0.0 0.0 260542.0, 260542.0 -0.13
A/J m 313896.0 45935.0   2   32481.0 0.146 281416.0, 346377.0 0.37
AKR/J m 335080.0 0.0   1   0.0 0.0 335080.0, 335080.0 0.56
AXB10/PgnJ m 187092.0 0.0   1   0.0 0.0 187092.0, 187092.0 -0.81
AXB12/PgnJ m 250951.0 0.0   1   0.0 0.0 250951.0, 250951.0 -0.22
AXB13/PgnJ m 206157.0 0.0   1   0.0 0.0 206157.0, 206157.0 -0.63
AXB15/PgnJ m 250219.0 0.0   1   0.0 0.0 250219.0, 250219.0 -0.22
AXB19a/PgnJ m 302722.0 0.0   1   0.0 0.0 302722.0, 302722.0 0.26
AXB19b/PgnJ m 372621.0 60669.0   2   42900.0 0.163 329721.0, 415521.0 0.91
AXB19/PgnJ m 247559.0 0.0   1   0.0 0.0 247559.0, 247559.0 -0.25
AXB1/PgnJ m 551986.0 0.0   1   0.0 0.0 551986.0, 551986.0 2.57
AXB23/PgnJ m 208381.0 0.0   1   0.0 0.0 208381.0, 208381.0 -0.61
AXB24/PgnJ m 277172.0 79474.0   2   56196.0 0.287 220976.0, 333368.0 0.03
AXB2/PgnJ m 565476.0 0.0   1   0.0 0.0 565476.0, 565476.0 2.7
AXB4/PgnJ m 267541.0 0.0   1   0.0 0.0 267541.0, 267541.0 -0.06
AXB5/PgnJ m 257343.0 0.0   1   0.0 0.0 257343.0, 257343.0 -0.16
AXB6/PgnJ m 263416.0 0.0   1   0.0 0.0 263416.0, 263416.0 -0.1
AXB8/PgnJ m 261729.0 0.0   1   0.0 0.0 261729.0, 261729.0 -0.12
BALB/cJ m 232223.0 71135.0   3 41070.0 0.306 151897.0, 287253.0 -0.39
BTBR T+ Itpr3tf/J m 288496.0 0.0   1   0.0 0.0 288496.0, 288496.0 0.13
BUB/BnJ m 415434.0 0.0   1   0.0 0.0 415434.0, 415434.0 1.31
BXA11/PgnJ m 145055.0 0.0   1   0.0 0.0 145055.0, 145055.0 -1.2
BXA12/PgnJ m 253080.0 0.0   1   0.0 0.0 253080.0, 253080.0 -0.2
BXA13/PgnJ m 312426.0 0.0   1   0.0 0.0 312426.0, 312426.0 0.35
BXA14/PgnJ m 159664.0 0.0   1   0.0 0.0 159664.0, 159664.0 -1.06
BXA16/PgnJ m 319921.0 111247.0   2   78664.0 0.348 241257.0, 398585.0 0.42
BXA1/PgnJ m 210087.0 0.0   1   0.0 0.0 210087.0, 210087.0 -0.59
BXA24/PgnJ m 260265.0 0.0   1   0.0 0.0 260265.0, 260265.0 -0.13
BXA25/PgnJ m 253080.0 0.0   1   0.0 0.0 253080.0, 253080.0 -0.2
BXA26/PgnJ m 287451.0 0.0   1   0.0 0.0 287451.0, 287451.0 0.12
BXA2/PgnJ m 201922.0 0.0   1   0.0 0.0 201922.0, 201922.0 -0.67
BXA4/PgnJ m 184006.0 0.0   1   0.0 0.0 184006.0, 184006.0 -0.84
BXA7/PgnJ m 315589.0 0.0   1   0.0 0.0 315589.0, 315589.0 0.38
BXA8/PgnJ m 116484.0 0.0   1   0.0 0.0 116484.0, 116484.0 -1.46
BXD11/TyJ m 208647.0 0.0   1   0.0 0.0 208647.0, 208647.0 -0.61
BXD12/TyJ m 386843.0 0.0   1   0.0 0.0 386843.0, 386843.0 1.04
BXD13/TyJ m 193961.0 0.0   1   0.0 0.0 193961.0, 193961.0 -0.74
BXD14/TyJ m 149958.0 0.0   1   0.0 0.0 149958.0, 149958.0 -1.15
BXD15/TyJ m 162042.0 0.0   1   0.0 0.0 162042.0, 162042.0 -1.04
BXD18/TyJ m 294404.0 0.0   1   0.0 0.0 294404.0, 294404.0 0.19
BXD19/TyJ m 172840.0 16827.0   2   11899.0 0.0974 160941.0, 184738.0 -0.94
BXD1/TyJ m 342087.0 0.0   1   0.0 0.0 342087.0, 342087.0 0.63
BXD20/TyJ m 304224.0 0.0   1   0.0 0.0 304224.0, 304224.0 0.28
BXD21/TyJ m 288714.0 0.0   1   0.0 0.0 288714.0, 288714.0 0.13
BXD22/TyJ m 371717.0 0.0   1   0.0 0.0 371717.0, 371717.0 0.9
BXD24/TyJ m 230125.0 0.0   1   0.0 0.0 230125.0, 230125.0 -0.41
BXD24/TyJ-Cep290rd16/J m 180773.0 0.0   1   0.0 0.0 180773.0, 180773.0 -0.87
BXD28/TyJ m 264418.0 0.0   1   0.0 0.0 264418.0, 264418.0 -0.09
BXD29-Tlr4lps-2J/J m 189414.0 0.0   1   0.0 0.0 189414.0, 189414.0 -0.79
BXD2/TyJ m 147512.0 0.0   1   0.0 0.0 147512.0, 147512.0 -1.17
BXD32/TyJ m 281508.0 0.0   1   0.0 0.0 281508.0, 281508.0 0.07
BXD33/TyJ m 395193.0 0.0   1   0.0 0.0 395193.0, 395193.0 1.12
BXD34/TyJ m 437378.0 0.0   1   0.0 0.0 437378.0, 437378.0 1.51
BXD36/TyJ m 212790.0 0.0   1   0.0 0.0 212790.0, 212790.0 -0.57
BXD38/TyJ m 291478.0 0.0   1   0.0 0.0 291478.0, 291478.0 0.16
BXD39/TyJ m 133250.0 0.0   1   0.0 0.0 133250.0, 133250.0 -1.31
BXD40/TyJ m 308135.0 0.0   1   0.0 0.0 308135.0, 308135.0 0.31
BXD42/TyJ m 261608.0 0.0   1   0.0 0.0 261608.0, 261608.0 -0.12
BXD5/TyJ m 214799.0 0.0   1   0.0 0.0 214799.0, 214799.0 -0.55
BXD6/TyJ m 254289.0 0.0   1   0.0 0.0 254289.0, 254289.0 -0.18
BXD8/TyJ m 346316.0 0.0   1   0.0 0.0 346316.0, 346316.0 0.67
BXD9/TyJ m 147247.0 0.0   1   0.0 0.0 147247.0, 147247.0 -1.18
BXH10/TyJ m 240837.0 0.0   1   0.0 0.0 240837.0, 240837.0 -0.31
BXH19/TyJ m 255208.0 0.0   1   0.0 0.0 255208.0, 255208.0 -0.18
BXH20/KccJ m 181362.0 0.0   1   0.0 0.0 181362.0, 181362.0 -0.86
BXH22/KccJ m 223285.0 0.0   1   0.0 0.0 223285.0, 223285.0 -0.47
BXH2/TyJ m 225510.0 0.0   1   0.0 0.0 225510.0, 225510.0 -0.45
BXH4/TyJ m 232141.0 19449.0   2   13753.0 0.0838 218389.0, 245894.0 -0.39
BXH6/TyJ m 285855.0 0.0   1   0.0 0.0 285855.0, 285855.0 0.11
BXH7/TyJ m 412502.0 0.0   1   0.0 0.0 412502.0, 412502.0 1.28
BXH8/TyJ m 174887.0 0.0   1   0.0 0.0 174887.0, 174887.0 -0.92
C3H/HeJ m 276506.0 105779.0   2   74797.0 0.383 201709.0, 351303.0 0.02
C57BL/6J m 290522.0 103976.0   5 46500.0 0.358 211579.0, 472188.0 0.15
C57L/J m 375771.0 0.0   1   0.0 0.0 375771.0, 375771.0 0.94
C58/J m 477612.0 0.0   1   0.0 0.0 477612.0, 477612.0 1.88
CAST/EiJ m 268590.0 0.0   1   0.0 0.0 268590.0, 268590.0 -0.05
CBA/J m 373265.0 0.0   1   0.0 0.0 373265.0, 373265.0 0.92
CE/J m 310020.0 0.0   1   0.0 0.0 310020.0, 310020.0 0.33
CXB11/HiAJ m 197882.0 169002.0   2   119503.0 0.854 78380.0, 317385.0 -0.71
CXB12/HiAJ m 301705.0 88630.0   2   62671.0 0.294 239034.0, 364376.0 0.25
CXB13/HiAJ m 394840.0 49102.0   2   34720.0 0.124 360119.0, 429560.0 1.12
CXB1/ByJ m 313337.0 98628.0   3 56943.0 0.315 229220.0, 421883.0 0.36
CXB2/ByJ m 234815.0 11490.0   3 6634.0 0.0489 225516.0, 247661.0 -0.36
CXB3/ByJ m 196534.0 78257.0   2   55336.0 0.398 141198.0, 251870.0 -0.72
CXB4/ByJ m 140240.0 16434.0   2   11620.0 0.117 128620.0, 151860.0 -1.24
CXB6/ByJ m 272657.0 122944.0   3 70982.0 0.451 161409.0, 404656.0 -0.01
CXB7/ByJ m 149270.0 24533.0   2   17348.0 0.164 131922.0, 166618.0 -1.16
CXB8/HiAJ m 254442.0 103869.0   3 59969.0 0.408 134817.0, 321741.0 -0.18
CXB9/HiAJ m 145515.0 33012.0   3 19059.0 0.227 119814.0, 182746.0 -1.19
DBA/2J m 215158.0 34149.0   4 17074.0 0.159 184699.0, 251298.0 -0.55
FVB/NJ m 929090.0 0.0   1   0.0 0.0 929090.0, 929090.0 6.07
I/LnJ m 384043.0 0.0   1   0.0 0.0 384043.0, 384043.0 1.02
KK/HlJ m 181788.0 0.0   1   0.0 0.0 181788.0, 181788.0 -0.86
LG/J m 223254.0 0.0   1   0.0 0.0 223254.0, 223254.0 -0.47
LP/J m 384905.0 0.0   1   0.0 0.0 384905.0, 384905.0 1.03
MA/MyJ m 379920.0 0.0   1   0.0 0.0 379920.0, 379920.0 0.98
NOD/ShiLtJ m 323867.0 0.0   1   0.0 0.0 323867.0, 323867.0 0.46
NON/ShiLtJ m 357647.0 0.0   1   0.0 0.0 357647.0, 357647.0 0.77
NZW/LacJ m 232704.0 0.0   1   0.0 0.0 232704.0, 232704.0 -0.38
PL/J m 269013.0 0.0   1   0.0 0.0 269013.0, 269013.0 -0.05
RIIIS/J m 201222.0 0.0   1   0.0 0.0 201222.0, 201222.0 -0.68
SEA/GnJ m 172855.0 0.0   1   0.0 0.0 172855.0, 172855.0 -0.94
SJL/J m 318097.0 0.0   1   0.0 0.0 318097.0, 318097.0 0.41
SWR/J m 232528.0 0.0   1   0.0 0.0 232528.0, 232528.0 -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 313896.5 57652.9541 431331.7245 196461.2755
AXB19b/PgnJ m 372620.9 57652.9541 490056.1245 255185.6755
AXB24/PgnJ m 277171.95 57652.9541 394607.1745 159736.7255
BALB/cJ m 232222.6 47073.4399 328108.0593 136337.1407
BXA16/PgnJ m 319920.9 57652.9541 437356.1245 202485.6755
BXD19/TyJ m 172839.8 57652.9541 290275.0245 55404.5755
BXH4/TyJ m 232141.4 57652.9541 349576.6245 114706.1755
C3H/HeJ m 276506.2 57652.9541 393941.4245 159070.9755
C57BL/6J m 290522.12 36462.9297 364794.6774 216249.5626
CXB11/HiAJ m 197882.3 57652.9541 315317.5245 80447.0755
CXB12/HiAJ m 301705.05 57652.9541 419140.2745 184269.8255
CXB13/HiAJ m 394839.55 57652.9541 512274.7745 277404.3255
CXB1/ByJ m 313336.6667 47073.4399 409222.126 217451.2074
CXB2/ByJ m 234815.3 47073.4399 330700.7593 138929.8407
CXB3/ByJ m 196534.05 57652.9541 313969.2745 79098.8255
CXB4/ByJ m 140240.1 57652.9541 257675.3245 22804.8755
CXB6/ByJ m 272656.8 47073.4399 368542.2593 176771.3407
CXB7/ByJ m 149270.05 57652.9541 266705.2745 31834.8255
CXB8/HiAJ m 254442.4 47073.4399 350327.8593 158556.9407
CXB9/HiAJ m 145515.3667 47073.4399 241400.826 49629.9074
DBA/2J m 215157.825 40766.7948 298197.0686 132118.5814




  GWAS USING LINEAR MIXED MODELS

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