Project measure / variable:   HMDPpheno6   spermidine

ID, description, units MPD:50151   spermidine   liver spermidine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver spermidine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means327171   None
Median of the strain means297168   None
SD of the strain means± 152357
Coefficient of variation (CV)0.466
Min–max range of strain means96023   –   846375   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 408666197242.343 19460295106.7782 2.1778 0.0211
Residuals 34 303822105022.978 8935944265.3817


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 158879.0 0.0   1   0.0 0.0 158879.0, 158879.0 -1.1
A/J m 297169.0 125728.0   2   88903.0 0.423 208266.0, 386072.0 -0.2
AKR/J m 143766.0 0.0   1   0.0 0.0 143766.0, 143766.0 -1.2
AXB10/PgnJ m 204843.0 0.0   1   0.0 0.0 204843.0, 204843.0 -0.8
AXB12/PgnJ m 342054.0 0.0   1   0.0 0.0 342054.0, 342054.0 0.1
AXB13/PgnJ m 207586.0 0.0   1   0.0 0.0 207586.0, 207586.0 -0.78
AXB15/PgnJ m 273290.0 0.0   1   0.0 0.0 273290.0, 273290.0 -0.35
AXB19a/PgnJ m 407608.0 0.0   1   0.0 0.0 407608.0, 407608.0 0.53
AXB19b/PgnJ m 413258.0 233312.0   2   164976.0 0.565 248282.0, 578235.0 0.57
AXB19/PgnJ m 594966.0 0.0   1   0.0 0.0 594966.0, 594966.0 1.76
AXB1/PgnJ m 668409.0 0.0   1   0.0 0.0 668409.0, 668409.0 2.24
AXB23/PgnJ m 192517.0 0.0   1   0.0 0.0 192517.0, 192517.0 -0.88
AXB24/PgnJ m 549264.0 11050.0   2   7814.0 0.0201 541450.0, 557078.0 1.46
AXB2/PgnJ m 228989.0 0.0   1   0.0 0.0 228989.0, 228989.0 -0.64
AXB4/PgnJ m 379980.0 0.0   1   0.0 0.0 379980.0, 379980.0 0.35
AXB5/PgnJ m 510164.0 0.0   1   0.0 0.0 510164.0, 510164.0 1.2
AXB6/PgnJ m 192232.0 0.0   1   0.0 0.0 192232.0, 192232.0 -0.89
AXB8/PgnJ m 297168.0 0.0   1   0.0 0.0 297168.0, 297168.0 -0.2
BALB/cJ m 167094.0 22360.0   3 12910.0 0.134 142128.0, 185279.0 -1.05
BTBR T+ Itpr3tf/J m 277785.0 0.0   1   0.0 0.0 277785.0, 277785.0 -0.32
BUB/BnJ m 145654.0 0.0   1   0.0 0.0 145654.0, 145654.0 -1.19
BXA11/PgnJ m 319239.0 0.0   1   0.0 0.0 319239.0, 319239.0 -0.05
BXA12/PgnJ m 274002.0 0.0   1   0.0 0.0 274002.0, 274002.0 -0.35
BXA13/PgnJ m 663486.0 0.0   1   0.0 0.0 663486.0, 663486.0 2.21
BXA14/PgnJ m 807299.0 0.0   1   0.0 0.0 807299.0, 807299.0 3.15
BXA16/PgnJ m 331112.0 93391.0   2   66037.0 0.282 265075.0, 397150.0 0.03
BXA1/PgnJ m 283804.0 0.0   1   0.0 0.0 283804.0, 283804.0 -0.28
BXA24/PgnJ m 389908.0 0.0   1   0.0 0.0 389908.0, 389908.0 0.41
BXA25/PgnJ m 505050.0 0.0   1   0.0 0.0 505050.0, 505050.0 1.17
BXA26/PgnJ m 328371.0 0.0   1   0.0 0.0 328371.0, 328371.0 0.01
BXA2/PgnJ m 181844.0 0.0   1   0.0 0.0 181844.0, 181844.0 -0.95
BXA4/PgnJ m 337045.0 0.0   1   0.0 0.0 337045.0, 337045.0 0.06
BXA7/PgnJ m 261949.0 0.0   1   0.0 0.0 261949.0, 261949.0 -0.43
BXA8/PgnJ m 316410.0 0.0   1   0.0 0.0 316410.0, 316410.0 -0.07
BXD11/TyJ m 241950.0 0.0   1   0.0 0.0 241950.0, 241950.0 -0.56
BXD12/TyJ m 475317.0 0.0   1   0.0 0.0 475317.0, 475317.0 0.97
BXD13/TyJ m 242300.0 0.0   1   0.0 0.0 242300.0, 242300.0 -0.56
BXD14/TyJ m 357661.0 0.0   1   0.0 0.0 357661.0, 357661.0 0.2
BXD15/TyJ m 275504.0 0.0   1   0.0 0.0 275504.0, 275504.0 -0.34
BXD18/TyJ m 337213.0 0.0   1   0.0 0.0 337213.0, 337213.0 0.07
BXD19/TyJ m 304104.0 15000.0   2   10607.0 0.0493 293497.0, 314710.0 -0.15
BXD1/TyJ m 403825.0 0.0   1   0.0 0.0 403825.0, 403825.0 0.5
BXD20/TyJ m 605285.0 0.0   1   0.0 0.0 605285.0, 605285.0 1.83
BXD21/TyJ m 360993.0 0.0   1   0.0 0.0 360993.0, 360993.0 0.22
BXD22/TyJ m 306910.0 0.0   1   0.0 0.0 306910.0, 306910.0 -0.13
BXD24/TyJ m 391416.0 0.0   1   0.0 0.0 391416.0, 391416.0 0.42
BXD24/TyJ-Cep290rd16/J m 591398.0 0.0   1   0.0 0.0 591398.0, 591398.0 1.73
BXD28/TyJ m 194065.0 61360.0   2   43388.0 0.316 150677.0, 237454.0 -0.87
BXD29-Tlr4lps-2J/J m 404014.0 0.0   1   0.0 0.0 404014.0, 404014.0 0.5
BXD2/TyJ m 518220.0 0.0   1   0.0 0.0 518220.0, 518220.0 1.25
BXD32/TyJ m 275680.0 0.0   1   0.0 0.0 275680.0, 275680.0 -0.34
BXD33/TyJ m 358787.0 0.0   1   0.0 0.0 358787.0, 358787.0 0.21
BXD34/TyJ m 295311.0 0.0   1   0.0 0.0 295311.0, 295311.0 -0.21
BXD36/TyJ m 288214.0 0.0   1   0.0 0.0 288214.0, 288214.0 -0.26
BXD38/TyJ m 496147.0 0.0   1   0.0 0.0 496147.0, 496147.0 1.11
BXD39/TyJ m 411274.0 0.0   1   0.0 0.0 411274.0, 411274.0 0.55
BXD40/TyJ m 247200.0 0.0   1   0.0 0.0 247200.0, 247200.0 -0.52
BXD42/TyJ m 540438.0 0.0   1   0.0 0.0 540438.0, 540438.0 1.4
BXD5/TyJ m 523848.0 0.0   1   0.0 0.0 523848.0, 523848.0 1.29
BXD6/TyJ m 434188.0 0.0   1   0.0 0.0 434188.0, 434188.0 0.7
BXD8/TyJ m 509787.0 0.0   1   0.0 0.0 509787.0, 509787.0 1.2
BXD9/TyJ m 846375.0 0.0   1   0.0 0.0 846375.0, 846375.0 3.41
BXH10/TyJ m 558676.0 0.0   1   0.0 0.0 558676.0, 558676.0 1.52
BXH19/TyJ m 619603.0 0.0   1   0.0 0.0 619603.0, 619603.0 1.92
BXH20/KccJ m 316217.0 0.0   1   0.0 0.0 316217.0, 316217.0 -0.07
BXH22/KccJ m 363405.0 0.0   1   0.0 0.0 363405.0, 363405.0 0.24
BXH2/TyJ m 344336.0 0.0   1   0.0 0.0 344336.0, 344336.0 0.11
BXH4/TyJ m 408433.0 41155.0   2   29101.0 0.101 379332.0, 437534.0 0.53
BXH6/TyJ m 306336.0 0.0   1   0.0 0.0 306336.0, 306336.0 -0.14
BXH7/TyJ m 464161.0 0.0   1   0.0 0.0 464161.0, 464161.0 0.9
BXH8/TyJ m 375893.0 0.0   1   0.0 0.0 375893.0, 375893.0 0.32
BXH9/TyJ m 209934.0 0.0   1   0.0 0.0 209934.0, 209934.0 -0.77
C3H/HeJ m 231045.0 94606.0   2   66896.0 0.409 164149.0, 297941.0 -0.63
C57BL/6J m 300295.0 62363.0   5 27890.0 0.208 226978.0, 395652.0 -0.18
C57L/J m 170289.0 0.0   1   0.0 0.0 170289.0, 170289.0 -1.03
C58/J m 536688.0 0.0   1   0.0 0.0 536688.0, 536688.0 1.38
CAST/EiJ m 555999.0 0.0   1   0.0 0.0 555999.0, 555999.0 1.5
CBA/J m 127461.0 0.0   1   0.0 0.0 127461.0, 127461.0 -1.31
CE/J m 117510.0 0.0   1   0.0 0.0 117510.0, 117510.0 -1.38
CXB11/HiAJ m 352986.0 154886.0   2   109521.0 0.439 243465.0, 462507.0 0.17
CXB12/HiAJ m 177134.0 32706.0   2   23127.0 0.185 154007.0, 200260.0 -0.98
CXB13/HiAJ m 297548.0 65292.0   3 37697.0 0.219 243330.0, 370026.0 -0.19
CXB1/ByJ m 249662.0 116517.0   3 67271.0 0.467 124081.0, 354264.0 -0.51
CXB2/ByJ m 226152.0 69962.0   3 40393.0 0.309 146490.0, 277609.0 -0.66
CXB3/ByJ m 224482.0 55629.0   2   39336.0 0.248 185146.0, 263817.0 -0.67
CXB4/ByJ m 222229.0 5476.0   2   3872.0 0.0246 218357.0, 226101.0 -0.69
CXB6/ByJ m 232190.0 22542.0   3 13015.0 0.0971 213536.0, 257238.0 -0.62
CXB7/ByJ m 172257.0 23724.0   2   16776.0 0.138 155481.0, 189033.0 -1.02
CXB8/HiAJ m 229514.0 62486.0   3 36076.0 0.272 182476.0, 300415.0 -0.64
CXB9/HiAJ m 199427.0 1201.0   3 693.0 0.00602 198090.0, 200413.0 -0.84
DBA/2J m 341664.0 191923.0   4 95961.0 0.562 176628.0, 565820.0 0.1
FVB/NJ m 257098.0 0.0   1   0.0 0.0 257098.0, 257098.0 -0.46
I/LnJ m 161580.0 0.0   1   0.0 0.0 161580.0, 161580.0 -1.09
KK/HlJ m 210409.0 0.0   1   0.0 0.0 210409.0, 210409.0 -0.77
LG/J m 218589.0 0.0   1   0.0 0.0 218589.0, 218589.0 -0.71
LP/J m 163168.0 0.0   1   0.0 0.0 163168.0, 163168.0 -1.08
MA/MyJ m 96023.0 0.0   1   0.0 0.0 96023.0, 96023.0 -1.52
NOD/ShiLtJ m 131112.0 0.0   1   0.0 0.0 131112.0, 131112.0 -1.29
NON/ShiLtJ m 162416.0 0.0   1   0.0 0.0 162416.0, 162416.0 -1.08
NZW/LacJ m 190474.0 0.0   1   0.0 0.0 190474.0, 190474.0 -0.9
PL/J m 174356.0 0.0   1   0.0 0.0 174356.0, 174356.0 -1.0
RIIIS/J m 289472.0 0.0   1   0.0 0.0 289472.0, 289472.0 -0.25
SEA/GnJ m 194221.0 0.0   1   0.0 0.0 194221.0, 194221.0 -0.87
SJL/J m 235255.0 0.0   1   0.0 0.0 235255.0, 235255.0 -0.6
SM/J m 182410.0 0.0   1   0.0 0.0 182410.0, 182410.0 -0.95
SWR/J m 192362.0 0.0   1   0.0 0.0 192362.0, 192362.0 -0.88


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 297169.2 66842.8914 433010.2991 161328.1009
AXB19b/PgnJ m 413258.5 66842.8914 549099.5991 277417.4009
AXB24/PgnJ m 549263.65 66842.8914 685104.7491 413422.5509
BALB/cJ m 167094.3 54576.9923 278008.0929 56180.5071
BXA16/PgnJ m 331112.35 66842.8914 466953.4491 195271.2509
BXD19/TyJ m 304103.5 66842.8914 439944.5991 168262.4009
BXD28/TyJ m 194065.4 66842.8914 329906.4991 58224.3009
BXH4/TyJ m 408433.2 66842.8914 544274.2991 272592.1009
C3H/HeJ m 231044.9 66842.8914 366885.9991 95203.8009
C57BL/6J m 300295.34 42275.1565 386208.7946 214381.8854
CXB11/HiAJ m 352985.95 66842.8914 488827.0491 217144.8509
CXB12/HiAJ m 177133.5 66842.8914 312974.5991 41292.4009
CXB13/HiAJ m 297547.6 54576.9923 408461.3929 186633.8071
CXB1/ByJ m 249662.0667 54576.9923 360575.8596 138748.2737
CXB2/ByJ m 226152.0667 54576.9923 337065.8596 115238.2737
CXB3/ByJ m 224481.65 66842.8914 360322.7491 88640.5509
CXB4/ByJ m 222229.05 66842.8914 358070.1491 86387.9509
CXB6/ByJ m 232190.1667 54576.9923 343103.9596 121276.3737
CXB7/ByJ m 172257.0 66842.8914 308098.0991 36415.9009
CXB8/HiAJ m 229514.1333 54576.9923 340427.9263 118600.3404
CXB9/HiAJ m 199427.3333 54576.9923 310341.1263 88513.5404
DBA/2J m 341664.475 47265.0618 437718.6373 245610.3127




  GWAS USING LINEAR MIXED MODELS