Project measure / variable:   HMDPpheno6   Lys

ID, description, units MPD:50143   Lys   liver lysine (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver lysine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means2833044   None
Median of the strain means2796974   None
SD of the strain means± 473760
Coefficient of variation (CV)0.167
Min–max range of strain means1546753   –   5083681   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 6455166523984.67 307388882094.508 7.0023 < 0.0001
Residuals 34 1492542943672.72 43898321872.7271


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 2579510.0 0.0   1   0.0 0.0 2579510.0, 2579510.0 -0.54
A/J m 2522484.0 30178.0   2   21339.0 0.012 2501145.0, 2543823.0 -0.66
AKR/J m 2003622.0 0.0   1   0.0 0.0 2003622.0, 2003622.0 -1.75
AXB10/PgnJ m 2941374.0 0.0   1   0.0 0.0 2941374.0, 2941374.0 0.23
AXB12/PgnJ m 2564573.0 0.0   1   0.0 0.0 2564573.0, 2564573.0 -0.57
AXB13/PgnJ m 2721992.0 0.0   1   0.0 0.0 2721992.0, 2721992.0 -0.23
AXB15/PgnJ m 3093475.0 0.0   1   0.0 0.0 3093475.0, 3093475.0 0.55
AXB19a/PgnJ m 3543904.0 0.0   1   0.0 0.0 3543904.0, 3543904.0 1.5
AXB19b/PgnJ m 3541764.0 292473.0   2   206810.0 0.0826 3334955.0, 3748574.0 1.5
AXB19/PgnJ m 3947454.0 0.0   1   0.0 0.0 3947454.0, 3947454.0 2.35
AXB1/PgnJ m 4323304.0 0.0   1   0.0 0.0 4323304.0, 4323304.0 3.15
AXB23/PgnJ m 2741546.0 0.0   1   0.0 0.0 2741546.0, 2741546.0 -0.19
AXB24/PgnJ m 2386676.0 95976.0   2   67865.0 0.0402 2318810.0, 2454540.0 -0.94
AXB2/PgnJ m 2394606.0 0.0   1   0.0 0.0 2394606.0, 2394606.0 -0.93
AXB4/PgnJ m 3353461.0 0.0   1   0.0 0.0 3353461.0, 3353461.0 1.1
AXB5/PgnJ m 2333082.0 0.0   1   0.0 0.0 2333082.0, 2333082.0 -1.06
AXB6/PgnJ m 3198449.0 0.0   1   0.0 0.0 3198449.0, 3198449.0 0.77
AXB8/PgnJ m 2854260.0 0.0   1   0.0 0.0 2854260.0, 2854260.0 0.04
BALB/cJ m 2799999.0 403596.0   3 233016.0 0.144 2548632.0, 3265536.0 -0.07
BTBR T+ Itpr3tf/J m 2420598.0 0.0   1   0.0 0.0 2420598.0, 2420598.0 -0.87
BUB/BnJ m 3237234.0 0.0   1   0.0 0.0 3237234.0, 3237234.0 0.85
BXA11/PgnJ m 2640403.0 0.0   1   0.0 0.0 2640403.0, 2640403.0 -0.41
BXA12/PgnJ m 1546753.0 0.0   1   0.0 0.0 1546753.0, 1546753.0 -2.72
BXA13/PgnJ m 2739146.0 0.0   1   0.0 0.0 2739146.0, 2739146.0 -0.2
BXA14/PgnJ m 3494662.0 0.0   1   0.0 0.0 3494662.0, 3494662.0 1.4
BXA16/PgnJ m 2845096.0 176102.0   2   124523.0 0.0619 2720572.0, 2969619.0 0.03
BXA1/PgnJ m 2858749.0 0.0   1   0.0 0.0 2858749.0, 2858749.0 0.05
BXA24/PgnJ m 3253678.0 0.0   1   0.0 0.0 3253678.0, 3253678.0 0.89
BXA25/PgnJ m 2674180.0 0.0   1   0.0 0.0 2674180.0, 2674180.0 -0.34
BXA26/PgnJ m 3241636.0 0.0   1   0.0 0.0 3241636.0, 3241636.0 0.86
BXA2/PgnJ m 3150444.0 0.0   1   0.0 0.0 3150444.0, 3150444.0 0.67
BXA4/PgnJ m 2058729.0 0.0   1   0.0 0.0 2058729.0, 2058729.0 -1.63
BXA7/PgnJ m 3397736.0 0.0   1   0.0 0.0 3397736.0, 3397736.0 1.19
BXA8/PgnJ m 2598400.0 0.0   1   0.0 0.0 2598400.0, 2598400.0 -0.5
BXD11/TyJ m 2215721.0 0.0   1   0.0 0.0 2215721.0, 2215721.0 -1.3
BXD12/TyJ m 2943192.0 0.0   1   0.0 0.0 2943192.0, 2943192.0 0.23
BXD13/TyJ m 2787128.0 0.0   1   0.0 0.0 2787128.0, 2787128.0 -0.1
BXD14/TyJ m 2961988.0 0.0   1   0.0 0.0 2961988.0, 2961988.0 0.27
BXD15/TyJ m 2892420.0 0.0   1   0.0 0.0 2892420.0, 2892420.0 0.13
BXD18/TyJ m 2416548.0 0.0   1   0.0 0.0 2416548.0, 2416548.0 -0.88
BXD19/TyJ m 2572341.0 63741.0   2   45071.0 0.0248 2527270.0, 2617412.0 -0.55
BXD1/TyJ m 2727640.0 0.0   1   0.0 0.0 2727640.0, 2727640.0 -0.22
BXD20/TyJ m 2932664.0 0.0   1   0.0 0.0 2932664.0, 2932664.0 0.21
BXD21/TyJ m 2305934.0 0.0   1   0.0 0.0 2305934.0, 2305934.0 -1.11
BXD22/TyJ m 3207296.0 0.0   1   0.0 0.0 3207296.0, 3207296.0 0.79
BXD24/TyJ m 2857422.0 0.0   1   0.0 0.0 2857422.0, 2857422.0 0.05
BXD24/TyJ-Cep290rd16/J m 2565142.0 0.0   1   0.0 0.0 2565142.0, 2565142.0 -0.57
BXD28/TyJ m 2813416.0 349040.0   2   246809.0 0.124 2566608.0, 3060225.0 -0.04
BXD29-Tlr4lps-2J/J m 2919372.0 0.0   1   0.0 0.0 2919372.0, 2919372.0 0.18
BXD2/TyJ m 3026672.0 0.0   1   0.0 0.0 3026672.0, 3026672.0 0.41
BXD32/TyJ m 3680703.0 0.0   1   0.0 0.0 3680703.0, 3680703.0 1.79
BXD33/TyJ m 3186972.0 0.0   1   0.0 0.0 3186972.0, 3186972.0 0.75
BXD34/TyJ m 2970780.0 0.0   1   0.0 0.0 2970780.0, 2970780.0 0.29
BXD36/TyJ m 2243921.0 0.0   1   0.0 0.0 2243921.0, 2243921.0 -1.24
BXD38/TyJ m 3007374.0 0.0   1   0.0 0.0 3007374.0, 3007374.0 0.37
BXD39/TyJ m 2873446.0 0.0   1   0.0 0.0 2873446.0, 2873446.0 0.09
BXD40/TyJ m 2634836.0 0.0   1   0.0 0.0 2634836.0, 2634836.0 -0.42
BXD42/TyJ m 3094699.0 0.0   1   0.0 0.0 3094699.0, 3094699.0 0.55
BXD5/TyJ m 3049022.0 0.0   1   0.0 0.0 3049022.0, 3049022.0 0.46
BXD6/TyJ m 2733366.0 0.0   1   0.0 0.0 2733366.0, 2733366.0 -0.21
BXD8/TyJ m 2793948.0 0.0   1   0.0 0.0 2793948.0, 2793948.0 -0.08
BXD9/TyJ m 2535374.0 0.0   1   0.0 0.0 2535374.0, 2535374.0 -0.63
BXH10/TyJ m 3117711.0 0.0   1   0.0 0.0 3117711.0, 3117711.0 0.6
BXH19/TyJ m 2474539.0 0.0   1   0.0 0.0 2474539.0, 2474539.0 -0.76
BXH20/KccJ m 2939262.0 0.0   1   0.0 0.0 2939262.0, 2939262.0 0.22
BXH22/KccJ m 2654798.0 0.0   1   0.0 0.0 2654798.0, 2654798.0 -0.38
BXH2/TyJ m 2836659.0 0.0   1   0.0 0.0 2836659.0, 2836659.0 0.01
BXH4/TyJ m 2694217.0 153480.0   2   108526.0 0.057 2585691.0, 2802744.0 -0.29
BXH6/TyJ m 3422060.0 0.0   1   0.0 0.0 3422060.0, 3422060.0 1.24
BXH7/TyJ m 2740007.0 0.0   1   0.0 0.0 2740007.0, 2740007.0 -0.2
BXH8/TyJ m 2851928.0 0.0   1   0.0 0.0 2851928.0, 2851928.0 0.04
BXH9/TyJ m 2614662.0 0.0   1   0.0 0.0 2614662.0, 2614662.0 -0.46
C3H/HeJ m 2674399.0 348960.0   2   246752.0 0.13 2427647.0, 2921151.0 -0.33
C57BL/6J m 3353901.0 79446.0   5 35529.0 0.0237 3248279.0, 3431732.0 1.1
C57L/J m 2068946.0 0.0   1   0.0 0.0 2068946.0, 2068946.0 -1.61
C58/J m 5083681.0 0.0   1   0.0 0.0 5083681.0, 5083681.0 4.75
CAST/EiJ m 2593041.0 0.0   1   0.0 0.0 2593041.0, 2593041.0 -0.51
CBA/J m 2454106.0 0.0   1   0.0 0.0 2454106.0, 2454106.0 -0.8
CE/J m 2864823.0 0.0   1   0.0 0.0 2864823.0, 2864823.0 0.07
CXB11/HiAJ m 2611266.0 60885.0   2   43052.0 0.0233 2568214.0, 2654318.0 -0.47
CXB12/HiAJ m 3221248.0 236670.0   2   167351.0 0.0735 3053897.0, 3388599.0 0.82
CXB13/HiAJ m 3231217.0 300296.0   3 173376.0 0.0929 2983718.0, 3565290.0 0.84
CXB1/ByJ m 2630886.0 185563.0   3 107135.0 0.0705 2483024.0, 2839116.0 -0.43
CXB2/ByJ m 3013387.0 66536.0   3 38415.0 0.0221 2967390.0, 3089679.0 0.38
CXB3/ByJ m 2975987.0 192327.0   2   135995.0 0.0646 2839992.0, 3111983.0 0.3
CXB4/ByJ m 2860781.0 72921.0   2   51563.0 0.0255 2809218.0, 2912343.0 0.06
CXB6/ByJ m 2710665.0 296592.0   3 171238.0 0.109 2408124.0, 3000927.0 -0.26
CXB7/ByJ m 2821780.0 74445.0   2   52641.0 0.0264 2769139.0, 2874421.0 -0.02
CXB8/HiAJ m 3574035.0 282514.0   3 163110.0 0.079 3250386.0, 3771260.0 1.56
CXB9/HiAJ m 2944941.0 134342.0   3 77562.0 0.0456 2805884.0, 3074011.0 0.24
DBA/2J m 2432101.0 45887.0   4 22944.0 0.0189 2369849.0, 2478829.0 -0.85
FVB/NJ m 2193105.0 0.0   1   0.0 0.0 2193105.0, 2193105.0 -1.35
I/LnJ m 2788454.0 0.0   1   0.0 0.0 2788454.0, 2788454.0 -0.09
KK/HlJ m 2651901.0 0.0   1   0.0 0.0 2651901.0, 2651901.0 -0.38
LG/J m 2472841.0 0.0   1   0.0 0.0 2472841.0, 2472841.0 -0.76
LP/J m 2688706.0 0.0   1   0.0 0.0 2688706.0, 2688706.0 -0.3
MA/MyJ m 2157394.0 0.0   1   0.0 0.0 2157394.0, 2157394.0 -1.43
NOD/ShiLtJ m 3159924.0 0.0   1   0.0 0.0 3159924.0, 3159924.0 0.69
NON/ShiLtJ m 2841898.0 0.0   1   0.0 0.0 2841898.0, 2841898.0 0.02
NZW/LacJ m 2606555.0 0.0   1   0.0 0.0 2606555.0, 2606555.0 -0.48
PL/J m 2612914.0 0.0   1   0.0 0.0 2612914.0, 2612914.0 -0.46
RIIIS/J m 2694939.0 0.0   1   0.0 0.0 2694939.0, 2694939.0 -0.29
SEA/GnJ m 2540070.0 0.0   1   0.0 0.0 2540070.0, 2540070.0 -0.62
SJL/J m 1920112.0 0.0   1   0.0 0.0 1920112.0, 1920112.0 -1.93
SM/J m 2472235.0 0.0   1   0.0 0.0 2472235.0, 2472235.0 -0.76
SWR/J m 3082285.0 0.0   1   0.0 0.0 3082285.0, 3082285.0 0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 2522483.9 148152.4922 2823565.9888 2221401.8112
AXB19b/PgnJ m 3541764.3 148152.4922 3842846.3888 3240682.2112
AXB24/PgnJ m 2386675.5 148152.4922 2687757.5888 2085593.4112
BALB/cJ m 2799998.8667 120966.0033 3045831.3627 2554166.3706
BXA16/PgnJ m 2845095.65 148152.4922 3146177.7388 2544013.5612
BXD19/TyJ m 2572341.15 148152.4922 2873423.2388 2271259.0612
BXD28/TyJ m 2813416.4 148152.4922 3114498.4888 2512334.3112
BXH4/TyJ m 2694217.3 148152.4922 2995299.3888 2393135.2112
C3H/HeJ m 2674398.8 148152.4922 2975480.8888 2373316.7112
C57BL/6J m 3353900.82 93699.8633 3544321.8526 3163479.7874
CXB11/HiAJ m 2611266.15 148152.4922 2912348.2388 2310184.0612
CXB12/HiAJ m 3221248.15 148152.4922 3522330.2388 2920166.0612
CXB13/HiAJ m 3231217.2667 120966.0033 3477049.7627 2985384.7706
CXB1/ByJ m 2630886.2 120966.0033 2876718.696 2385053.704
CXB2/ByJ m 3013386.8667 120966.0033 3259219.3627 2767554.3706
CXB3/ByJ m 2975987.4 148152.4922 3277069.4888 2674905.3112
CXB4/ByJ m 2860780.55 148152.4922 3161862.6388 2559698.4612
CXB6/ByJ m 2710665.0 120966.0033 2956497.496 2464832.504
CXB7/ByJ m 2821779.9 148152.4922 3122861.9888 2520697.8112
CXB8/HiAJ m 3574034.7667 120966.0033 3819867.2627 3328202.2706
CXB9/HiAJ m 2944941.2 120966.0033 3190773.696 2699108.704
DBA/2J m 2432100.9 104759.6319 2644998.0867 2219203.7133




  GWAS USING LINEAR MIXED MODELS