Project measure / variable:   HMDPpheno6   Glu

ID, description, units MPD:50120   Glu   liver glutamate (16h fast), relative abundance    
Data set, strains HMDPpheno6   HMDP w/par   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno6 - liver glutamate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means5693460   None
Median of the strain means5544246   None
SD of the strain means± 1421950
Coefficient of variation (CV)0.250
Min–max range of strain means3107992   –   13312081   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 54965311557622.2 2617395788458.2 3.2194 0.0012
Residuals 34 27642583981774.0 813017175934.53


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 4118093.0 0.0   1   0.0 0.0 4118093.0, 4118093.0 -1.11
A/J m 3107992.0 348310.0   2   246292.0 0.112 2861700.0, 3354284.0 -1.82
AKR/J m 5250936.0 0.0   1   0.0 0.0 5250936.0, 5250936.0 -0.31
AXB10/PgnJ m 4702344.0 0.0   1   0.0 0.0 4702344.0, 4702344.0 -0.7
AXB12/PgnJ m 5755916.0 0.0   1   0.0 0.0 5755916.0, 5755916.0 0.04
AXB13/PgnJ m 4048796.0 0.0   1   0.0 0.0 4048796.0, 4048796.0 -1.16
AXB15/PgnJ m 3320616.0 0.0   1   0.0 0.0 3320616.0, 3320616.0 -1.67
AXB19a/PgnJ m 4124912.0 0.0   1   0.0 0.0 4124912.0, 4124912.0 -1.1
AXB19b/PgnJ m 5718998.0 223554.0   2   158076.0 0.0391 5560922.0, 5877075.0 0.02
AXB19/PgnJ m 4647946.0 0.0   1   0.0 0.0 4647946.0, 4647946.0 -0.74
AXB1/PgnJ m 6268232.0 0.0   1   0.0 0.0 6268232.0, 6268232.0 0.4
AXB23/PgnJ m 4242315.0 0.0   1   0.0 0.0 4242315.0, 4242315.0 -1.02
AXB24/PgnJ m 4407806.0 353266.0   2   249797.0 0.0801 4158010.0, 4657603.0 -0.9
AXB2/PgnJ m 6157086.0 0.0   1   0.0 0.0 6157086.0, 6157086.0 0.33
AXB4/PgnJ m 6331404.0 0.0   1   0.0 0.0 6331404.0, 6331404.0 0.45
AXB5/PgnJ m 4333617.0 0.0   1   0.0 0.0 4333617.0, 4333617.0 -0.96
AXB6/PgnJ m 7152770.0 0.0   1   0.0 0.0 7152770.0, 7152770.0 1.03
AXB8/PgnJ m 5899417.0 0.0   1   0.0 0.0 5899417.0, 5899417.0 0.14
BALB/cJ m 6298392.0 356788.0   3 205991.0 0.0566 5941198.0, 6654772.0 0.43
BTBR T+ Itpr3tf/J m 4470004.0 0.0   1   0.0 0.0 4470004.0, 4470004.0 -0.86
BUB/BnJ m 8767260.0 0.0   1   0.0 0.0 8767260.0, 8767260.0 2.16
BXA11/PgnJ m 5085544.0 0.0   1   0.0 0.0 5085544.0, 5085544.0 -0.43
BXA12/PgnJ m 4098877.0 0.0   1   0.0 0.0 4098877.0, 4098877.0 -1.12
BXA13/PgnJ m 5359835.0 0.0   1   0.0 0.0 5359835.0, 5359835.0 -0.23
BXA14/PgnJ m 3694703.0 0.0   1   0.0 0.0 3694703.0, 3694703.0 -1.41
BXA16/PgnJ m 5017584.0 274275.0   2   193941.0 0.0547 4823643.0, 5211526.0 -0.48
BXA1/PgnJ m 7031790.0 0.0   1   0.0 0.0 7031790.0, 7031790.0 0.94
BXA24/PgnJ m 6629379.0 0.0   1   0.0 0.0 6629379.0, 6629379.0 0.66
BXA25/PgnJ m 3976533.0 0.0   1   0.0 0.0 3976533.0, 3976533.0 -1.21
BXA26/PgnJ m 6161130.0 0.0   1   0.0 0.0 6161130.0, 6161130.0 0.33
BXA2/PgnJ m 6604992.0 0.0   1   0.0 0.0 6604992.0, 6604992.0 0.64
BXA4/PgnJ m 3500918.0 0.0   1   0.0 0.0 3500918.0, 3500918.0 -1.54
BXA7/PgnJ m 7753490.0 0.0   1   0.0 0.0 7753490.0, 7753490.0 1.45
BXA8/PgnJ m 4326459.0 0.0   1   0.0 0.0 4326459.0, 4326459.0 -0.96
BXD11/TyJ m 5110662.0 0.0   1   0.0 0.0 5110662.0, 5110662.0 -0.41
BXD12/TyJ m 7324208.0 0.0   1   0.0 0.0 7324208.0, 7324208.0 1.15
BXD13/TyJ m 5996155.0 0.0   1   0.0 0.0 5996155.0, 5996155.0 0.21
BXD14/TyJ m 5145110.0 0.0   1   0.0 0.0 5145110.0, 5145110.0 -0.39
BXD15/TyJ m 6507384.0 0.0   1   0.0 0.0 6507384.0, 6507384.0 0.57
BXD18/TyJ m 5003031.0 0.0   1   0.0 0.0 5003031.0, 5003031.0 -0.49
BXD19/TyJ m 5260318.0 1683823.0   2   1190642.0 0.32 4069675.0, 6450960.0 -0.3
BXD1/TyJ m 4896012.0 0.0   1   0.0 0.0 4896012.0, 4896012.0 -0.56
BXD20/TyJ m 5445162.0 0.0   1   0.0 0.0 5445162.0, 5445162.0 -0.17
BXD21/TyJ m 3703119.0 0.0   1   0.0 0.0 3703119.0, 3703119.0 -1.4
BXD22/TyJ m 9442537.0 0.0   1   0.0 0.0 9442537.0, 9442537.0 2.64
BXD24/TyJ m 5353755.0 0.0   1   0.0 0.0 5353755.0, 5353755.0 -0.24
BXD24/TyJ-Cep290rd16/J m 5484980.0 0.0   1   0.0 0.0 5484980.0, 5484980.0 -0.15
BXD28/TyJ m 7579903.0 492657.0   2   348361.0 0.065 7231542.0, 7928264.0 1.33
BXD29-Tlr4lps-2J/J m 5670342.0 0.0   1   0.0 0.0 5670342.0, 5670342.0 -0.02
BXD2/TyJ m 6523341.0 0.0   1   0.0 0.0 6523341.0, 6523341.0 0.58
BXD32/TyJ m 7942807.0 0.0   1   0.0 0.0 7942807.0, 7942807.0 1.58
BXD33/TyJ m 5811816.0 0.0   1   0.0 0.0 5811816.0, 5811816.0 0.08
BXD34/TyJ m 7384090.0 0.0   1   0.0 0.0 7384090.0, 7384090.0 1.19
BXD36/TyJ m 6994855.0 0.0   1   0.0 0.0 6994855.0, 6994855.0 0.92
BXD38/TyJ m 5267460.0 0.0   1   0.0 0.0 5267460.0, 5267460.0 -0.3
BXD39/TyJ m 4713126.0 0.0   1   0.0 0.0 4713126.0, 4713126.0 -0.69
BXD40/TyJ m 8567563.0 0.0   1   0.0 0.0 8567563.0, 8567563.0 2.02
BXD42/TyJ m 4409321.0 0.0   1   0.0 0.0 4409321.0, 4409321.0 -0.9
BXD5/TyJ m 5411408.0 0.0   1   0.0 0.0 5411408.0, 5411408.0 -0.2
BXD6/TyJ m 5901228.0 0.0   1   0.0 0.0 5901228.0, 5901228.0 0.15
BXD8/TyJ m 4748432.0 0.0   1   0.0 0.0 4748432.0, 4748432.0 -0.66
BXD9/TyJ m 5894668.0 0.0   1   0.0 0.0 5894668.0, 5894668.0 0.14
BXH10/TyJ m 6376534.0 0.0   1   0.0 0.0 6376534.0, 6376534.0 0.48
BXH19/TyJ m 5525680.0 0.0   1   0.0 0.0 5525680.0, 5525680.0 -0.12
BXH20/KccJ m 7634968.0 0.0   1   0.0 0.0 7634968.0, 7634968.0 1.37
BXH22/KccJ m 7282742.0 0.0   1   0.0 0.0 7282742.0, 7282742.0 1.12
BXH2/TyJ m 5387496.0 0.0   1   0.0 0.0 5387496.0, 5387496.0 -0.22
BXH4/TyJ m 5825644.0 1260494.0   2   891304.0 0.216 4934340.0, 6716948.0 0.09
BXH6/TyJ m 7859800.0 0.0   1   0.0 0.0 7859800.0, 7859800.0 1.52
BXH7/TyJ m 5081330.0 0.0   1   0.0 0.0 5081330.0, 5081330.0 -0.43
BXH8/TyJ m 4726274.0 0.0   1   0.0 0.0 4726274.0, 4726274.0 -0.68
BXH9/TyJ m 5544012.0 0.0   1   0.0 0.0 5544012.0, 5544012.0 -0.11
C3H/HeJ m 4543203.0 751081.0   2   531095.0 0.165 4012108.0, 5074298.0 -0.81
C57BL/6J m 6375880.0 815470.0   5 364689.0 0.128 5670152.0, 7694012.0 0.48
C57L/J m 5750669.0 0.0   1   0.0 0.0 5750669.0, 5750669.0 0.04
C58/J m 13312081.0 0.0   1   0.0 0.0 13312081.0, 13312081.0 5.36
CAST/EiJ m 4794726.0 0.0   1   0.0 0.0 4794726.0, 4794726.0 -0.63
CBA/J m 4464792.0 0.0   1   0.0 0.0 4464792.0, 4464792.0 -0.86
CE/J m 4696475.0 0.0   1   0.0 0.0 4696475.0, 4696475.0 -0.7
CXB11/HiAJ m 7173815.0 2495038.0   2   1764258.0 0.348 5409557.0, 8938073.0 1.04
CXB12/HiAJ m 5810378.0 88070.0   2   62275.0 0.0152 5748102.0, 5872652.0 0.08
CXB13/HiAJ m 7274929.0 1620553.0   3 935627.0 0.223 6279872.0, 9144896.0 1.11
CXB1/ByJ m 5611081.0 972434.0   3 561435.0 0.173 4991360.0, 6731858.0 -0.06
CXB2/ByJ m 6526260.0 1240566.0   3 716241.0 0.19 5525490.0, 7914253.0 0.59
CXB3/ByJ m 6081456.0 631512.0   2   446547.0 0.104 5634909.0, 6528002.0 0.27
CXB4/ByJ m 5682891.0 317131.0   2   224245.0 0.0558 5458646.0, 5907136.0 -0.01
CXB6/ByJ m 6604186.0 598852.0   3 345748.0 0.0907 5919522.0, 7030488.0 0.64
CXB7/ByJ m 4816804.0 572582.0   2   404876.0 0.119 4411927.0, 5221680.0 -0.62
CXB8/HiAJ m 5679797.0 340522.0   3 196600.0 0.06 5341252.0, 6022262.0 -0.01
CXB9/HiAJ m 6689116.0 477146.0   3 275480.0 0.0713 6185857.0, 7134951.0 0.7
DBA/2J m 4740225.0 382721.0   4 191360.0 0.0807 4369295.0, 5140480.0 -0.67
FVB/NJ m 6197100.0 0.0   1   0.0 0.0 6197100.0, 6197100.0 0.35
I/LnJ m 5369774.0 0.0   1   0.0 0.0 5369774.0, 5369774.0 -0.23
KK/HlJ m 6726222.0 0.0   1   0.0 0.0 6726222.0, 6726222.0 0.73
LG/J m 4806454.0 0.0   1   0.0 0.0 4806454.0, 4806454.0 -0.62
LP/J m 3912925.0 0.0   1   0.0 0.0 3912925.0, 3912925.0 -1.25
MA/MyJ m 5718242.0 0.0   1   0.0 0.0 5718242.0, 5718242.0 0.02
NOD/ShiLtJ m 6062213.0 0.0   1   0.0 0.0 6062213.0, 6062213.0 0.26
NON/ShiLtJ m 4476630.0 0.0   1   0.0 0.0 4476630.0, 4476630.0 -0.86
NZW/LacJ m 4293320.0 0.0   1   0.0 0.0 4293320.0, 4293320.0 -0.98
PL/J m 5752868.0 0.0   1   0.0 0.0 5752868.0, 5752868.0 0.04
RIIIS/J m 5651350.0 0.0   1   0.0 0.0 5651350.0, 5651350.0 -0.03
SEA/GnJ m 4874594.0 0.0   1   0.0 0.0 4874594.0, 4874594.0 -0.58
SJL/J m 4964892.0 0.0   1   0.0 0.0 4964892.0, 4964892.0 -0.51
SM/J m 5544481.0 0.0   1   0.0 0.0 5544481.0, 5544481.0 -0.1
SWR/J m 5423608.0 0.0   1   0.0 0.0 5423608.0, 5423608.0 -0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 3107991.9 637580.26 4403710.8827 1812272.9173
AXB19b/PgnJ m 5718998.5 637580.26 7014717.4827 4423279.5173
AXB24/PgnJ m 4407806.25 637580.26 5703525.2327 3112087.2673
BALB/cJ m 6298392.0 520582.1024 7356342.1192 5240441.8808
BXA16/PgnJ m 5017584.5 637580.26 6313303.4827 3721865.5173
BXD19/TyJ m 5260317.65 637580.26 6556036.6327 3964598.6673
BXD28/TyJ m 7579903.25 637580.26 8875622.2327 6284184.2673
BXH4/TyJ m 5825643.5 637580.26 7121362.4827 4529924.5173
C3H/HeJ m 4543203.25 637580.26 5838922.2327 3247484.2673
C57BL/6J m 6375879.6 403241.1626 7195364.2386 5556394.9614
CXB11/HiAJ m 7173815.0 637580.26 8469533.9827 5878096.0173
CXB12/HiAJ m 5810377.5 637580.26 7106096.4827 4514658.5173
CXB13/HiAJ m 7274928.8333 520582.1024 8332878.9525 6216978.7141
CXB1/ByJ m 5611080.8333 520582.1024 6669030.9525 4553130.7141
CXB2/ByJ m 6526260.1667 520582.1024 7584210.2859 5468310.0475
CXB3/ByJ m 6081455.75 637580.26 7377174.7327 4785736.7673
CXB4/ByJ m 5682891.25 637580.26 6978610.2327 4387172.2673
CXB6/ByJ m 6604185.5 520582.1024 7662135.6192 5546235.3808
CXB7/ByJ m 4816803.5 637580.26 6112522.4827 3521084.5173
CXB8/HiAJ m 5679796.8333 520582.1024 6737746.9525 4621846.7141
CXB9/HiAJ m 6689116.5 520582.1024 7747066.6192 5631166.3808
DBA/2J m 4740225.375 450837.3254 5656437.0542 3824013.6958




  GWAS USING LINEAR MIXED MODELS