Project measure / variable:   Jaxpheno4   NEUT16

ID, description, units MPD:22911   NEUT16   neutrophil count (NEUT; units per volume x 103)   [n/µL]  at age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - neutrophil count (NEUT; units per volume x 103) at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.494   n/µL 0.661   n/µL
Median of the strain means0.566   n/µL 0.586   n/µL
SD of the strain means± 0.215 ± 0.260
Coefficient of variation (CV)0.435 0.393
Min–max range of strain means0.228   –   0.768   n/µL 0.349   –   1.17   n/µL
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.7851 3.7851 20.5978 < 0.0001
strain 8 3.7425 0.4678 2.5458 0.0108
sex:strain 8 14.6292 1.8287 9.9513 < 0.0001
Residuals 286 52.5555 0.1838


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.271 0.123   16 0.0309 0.455 0.1, 0.59 -1.04
B6D2F1/J m 0.564 0.267   10 0.0845 0.474 0.21, 1.05 -0.37
BALB/cByJ f 0.768 0.274   21 0.0599 0.357 0.35, 1.39 1.27
BALB/cByJ m 0.668 0.23   22 0.0491 0.345 0.4, 1.17 0.03
C3H/HeJ f 0.623 0.11   10 0.0349 0.177 0.47, 0.85 0.6
C3H/HeJ m 0.704 0.322   11 0.097 0.457 0.43, 1.46 0.16
C57BL/6J f 0.228 0.196   35 0.0331 0.859 0.08, 1.05 -1.24
C57BL/6J m 1.17 1.11   30 0.203 0.951 0.12, 4.53 1.96
CBA/J f 0.566 0.428   22 0.0913 0.756 0.19, 2.36 0.33
CBA/J m 0.38 0.121   23 0.0252 0.318 0.23, 0.76 -1.08
DBA/2J f 0.732 0.219   11 0.066 0.299 0.42, 1.2 1.11
DBA/2J m 0.586 0.141   11 0.0424 0.24 0.41, 0.82 -0.29
FVB/NJ f 0.232 0.071   10 0.0224 0.306 0.15, 0.38 -1.22
FVB/NJ m 0.949 0.578   11 0.174 0.609 0.23, 1.85 1.11
NOD.CB17-Prkdcscid/J f 0.401 0.146   10 0.0463 0.365 0.2, 0.63 -0.43
NOD.CB17-Prkdcscid/J m 0.349 0.0703   10 0.0222 0.201 0.24, 0.5 -1.2
NOD/ShiLtJ f 0.629 0.283   20 0.0632 0.449 0.19, 1.33 0.63
NOD/ShiLtJ m 0.582 0.197   21 0.0429 0.338 0.38, 1.17 -0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 0.2712 0.1072 0.4822 0.0603
B6D2F1/J m 0.564 0.1356 0.8308 0.2972
BALB/cByJ f 0.7676 0.0935 0.9517 0.5835
BALB/cByJ m 0.6677 0.0914 0.8476 0.4878
C3H/HeJ f 0.623 0.1356 0.8898 0.3562
C3H/HeJ m 0.7036 0.1292 0.958 0.4492
C57BL/6J f 0.228 0.0725 0.3706 0.0854
C57BL/6J m 1.1693 0.0783 1.3234 1.0153
CBA/J f 0.5664 0.0914 0.7463 0.3865
CBA/J m 0.3796 0.0894 0.5555 0.2036
DBA/2J f 0.7318 0.1292 0.9862 0.4774
DBA/2J m 0.5864 0.1292 0.8408 0.332
FVB/NJ f 0.232 0.1356 0.4988 0.0
FVB/NJ m 0.9491 0.1292 1.2035 0.6947
NOD.CB17-Prkdcscid/J f 0.401 0.1356 0.6678 0.1342
NOD.CB17-Prkdcscid/J m 0.349 0.1356 0.6158 0.0822
NOD/ShiLtJ f 0.6295 0.0959 0.8182 0.4408
NOD/ShiLtJ m 0.5824 0.0935 0.7665 0.3983


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 0.4176 0.0864 0.5877 0.2476
BALB/cByJ both 0.7177 0.0654 0.8464 0.589
C3H/HeJ both 0.6633 0.0937 0.8476 0.479
C57BL/6J both 0.6987 0.0533 0.8036 0.5937
CBA/J both 0.473 0.0639 0.5988 0.3472
DBA/2J both 0.6591 0.0914 0.839 0.4792
FVB/NJ both 0.5905 0.0937 0.7749 0.4062
NOD.CB17-Prkdcscid/J both 0.375 0.0959 0.5637 0.1863
NOD/ShiLtJ both 0.6059 0.067 0.7378 0.4741




  GWAS USING LINEAR MIXED MODELS