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Sanger4: Sanger SNP and indel data, 89+ million locations, 37 inbred strains of mice (2017)

Keane TM, Goodstadt L, Danecek P, White MA, Wong K, Yalcin B, Heger A, Agam A, Slater G, et al. Mouse genomic variation and its effect on phenotypes and gene regulation. Nature. 2011 Sep 14;477(7364):289-94. doi: 10.1038/nature10413.   PubMed 21921910  


       
Authoritative source: ftp://ftp-mouse.sanger.ac.uk/current_snps. A new download was taken from the above resource on 25 Jan 2017. We have combined SNPs and indels into this one data set. Only higher-confidence calls have been retained (VCF FI = 1). Most locations have associated dbSNP rs numbers and dbSNP gene/function annotation.

Sanger4 downloads
Do the following: Click Retrieve SNP Data above, submit a query, then save your results as CSV.
Institutional authorship Wellcome Trust Sanger Institute     Lab web site
AcknowledgementsFunding provided by The Medical Research Council (UK), Wellcome Trust 085906/Z/08/Z, 083573/Z/07/Z; Biotechnology and Biological Sciences Research Council (UK) BB/F022697/1; Cancer Research (UK); The Jackson Laboratory; NSF Grant DEB 0918000; NIH LM007359, AI15416; NIDDK; Juvenile Diabetes Research Foundation International
Project type SNP/variation strain survey data set
MPD identifiersSanger4     MPD:388
Data changelog No updates/corrections.       Initial release date: 06/2017.
Formatted citation
Click above to copy-paste the entire citation for this MPD web page.
• SNP profiling, 80,000,000+ genomic locations. SNPs and indels. 1-19,X.
• 37 strains tested
• Panel: inbred