MPD: Phenotype measures mapped to VT:1000241, fear/anxiety-related behavior trait

Phenotype measures in JaxKOMP-LAP associated with ontology term
VT:1000241 'fear/anxiety-related behavior trait'

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All measures in this list are mapped to the ontology descendants of VT:1000241. None are mapped to VT:1000241 directly.

VT:0010716 anxiety-related behavior trait

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)	Year
JaxKOMP-LAP:2	JaxKOMP-LAP	open field test	(none)	average speed in center of arena, 20 min test [cm/s] center_speed center_average_speed 101232 IMPC_OFD_017_001	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:3	JaxKOMP-LAP	open field test	(none)	distance traveled in center of arena, 20 min test [cm] center_distance center_distance_traveled 101233 IMPC_OFD_014_001	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:4	JaxKOMP-LAP	open field test	(none)	permanence time in center of arena, 20 min test [s] center_permanence center_permanence_time 101234 IMPC_OFD_016_001	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:6	JaxKOMP-LAP	open field test	(none)	permanence time in corners of arena, 20 min test [s] corners_permanence corners_permanence_time 101237	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:8	JaxKOMP-LAP	open field test	(none)	distance traveled, 20 min test [cm] distance distance_traveled_5min_bins 101239 IMPC_OFD_005_001 1st 5min 2nd 5min 3rd 5min 4th 5min	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:12	JaxKOMP-LAP	open field test	(none)	total distance traveled, 20 min test [cm] distance_total distance_traveled_total 101243 IMPC_OFD_020_001	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:13	JaxKOMP-LAP	open field test	(none)	distance traveled habituation ratio, 20 min test [ratio] distance_habituation distance_traveled_habituation_ratio 101244	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:14	JaxKOMP-LAP	open field test	(none)	distance traveled slope, 20 min test [] distance_slope distance_traveled_slope 101245	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:15	JaxKOMP-LAP	open field test	(none)	number of fecal boli, 20 min test [n] fecal_boli 101246	KOMP	31	both	66-72wks	N=8	2021

JaxKOMP-LAP:16	JaxKOMP-LAP	open field test	(none)	number of rears in 5 min bins, 20 min test [n] rears number_of_rears_5min_bins 101249 IMPC_OFD_006_001 1st 5min 2nd 5min 3rd 5min 4th 5min	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:20	JaxKOMP-LAP	open field test	(none)	total number of rears, 20 min test [n] rears_total number_of_rears_total 101253	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:21	JaxKOMP-LAP	open field test	(none)	percentage of total time in center of arena, 20 min test [%] pct_center pcttime_center 101254 IMPC_OFD_022_001	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:22	JaxKOMP-LAP	open field test	(none)	percentage of total time in center, habituation ratio, 20 min test [ratio] pct_center_habituation pcttime_center_habituation_ratio 101255	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:23	JaxKOMP-LAP	open field test	(none)	percentage of total time in center of arena, slope, 20 min test [] pct_center_slope pcttime_center_slope 101256	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:24	JaxKOMP-LAP	open field test	(none)	percentage of total time in corners of arena, 20 min test [s] pct_corners pcttime_corners 101257	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:25	JaxKOMP-LAP	open field test	(none)	percentage of total time in corners, habituation ratio, 20 min test [%] pct_corners_habituation pcttime_corners_habituation_ratio 101258	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:26	JaxKOMP-LAP	open field test	(none)	percentage of total time in corners, slope, 20 min test [] pct_corners_slope pcttime_corners_slope 101259	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:27	JaxKOMP-LAP	open field test	(none)	average speed in periphery of arena, 20 min test [cm/s] periphery_speed periphery_average_speed 101260 IMPC_OFD_013_001	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:28	JaxKOMP-LAP	open field test	(none)	distance traveled in periphery of arena, 20 min test [cm] periphery_distance periphery_distance_traveled 101261 IMPC_OFD_010_001	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:29	JaxKOMP-LAP	open field test	(none)	permanence time in periphery of arena, 20 min test [s] periphery_permanence periphery_permanence_time 101262 IMPC_OFD_012_001	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:30	JaxKOMP-LAP	open field test	(none)	whole arena time spent mobile, 20 min test [s] time_mobile time_spent_mobile 101264	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:31	JaxKOMP-LAP	open field test	(none)	whole arena time spent vertical, 20 min test [s] time_vertical vertical_time 101265	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:32	JaxKOMP-LAP	open field test	(none)	whole arena average speed, 20 min test [cm/s] whole_speed whole_arena_average_speed 101266 IMPC_OFD_009_001	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:33	JaxKOMP-LAP	open field test	(none)	whole arena permanence time, 20 min test [s] whole_arena_permanence_time 101267 IMPC_OFD_008_001	KOMP	108	both	66-72wks	N=6	2021

JaxKOMP-LAP:34	JaxKOMP-LAP	open field test	(none)	whole arena resting time, 20 min test [s] whole_rest whole_arena_resting_time 101268 IMPC_OFD_007_001	KOMP	118	both	66-72wks	N=8	2021

JaxKOMP-LAP:117	JaxKOMP-LAP	observation (SHIRPA)	(none)	transfer arousal transfer_arousal 101422 categorical	KOMP	148	both	66-72wks		2021

JaxKOMP-LAP:142	JaxKOMP-LAP	hole board test	(none)	total number of hole pokes, 20 min test [n] hole_pokes total_hole_pokes 101451	KOMP	97	both	67-73wks	N=7	2021

JaxKOMP-LAP:143	JaxKOMP-LAP	hole board test	(none)	number of hole pokes by individual hole number, 20 min test [n] total_hole_pokes_hole_N 101452 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16	KOMP	97	both	67-73wks	N=7	2021

JaxKOMP-LAP:159	JaxKOMP-LAP	light-dark box	(none)	latency to enter dark zone, 20 min test [s] reaction_time_LD reaction_time 101480	KOMP	124	both	67-73wks	N=8	2021

JaxKOMP-LAP:160	JaxKOMP-LAP	light-dark box	(none)	number of transitions between light and dark zones, 20 min test [n] transitions_LD side_changes 101481	KOMP	124	both	67-73wks	N=8	2021

JaxKOMP-LAP:161	JaxKOMP-LAP	light-dark box	(none)	time spent in light zone, 20 min test [s] light_dur_LD left_side_time_spent 101482	KOMP	124	both	67-73wks	N=8	2021

JaxKOMP-LAP:162	JaxKOMP-LAP	light-dark box	(none)	time mobile in light zone, 20 min test [s] light_mobile_LD left_side_mobile_time_spent 101483	KOMP	124	both	67-73wks	N=8	2021

JaxKOMP-LAP:163	JaxKOMP-LAP	light-dark box	(none)	time spent in dark zone, 20 min test [s] dark_dur_LD right_side_time_spent 101484	KOMP	124	both	67-73wks	N=8	2021

JaxKOMP-LAP:164	JaxKOMP-LAP	light-dark box	(none)	time mobile in dark zone, 20 min test [s] dark_mobile_LD right_side_mobile_time_spent 101485	KOMP	124	both	67-73wks	N=8	2021

JaxKOMP-LAP:165	JaxKOMP-LAP	light-dark box	(none)	fecal boli count, 20 min test [n] defecation_LD fecal_boli_ld 101486	KOMP	32	both	67-73wks	N=8	2021

JaxKOMP-LAP:166	JaxKOMP-LAP	light-dark box	(none)	percentage of total time in dark zone, 20 min test [%] pct_dark_LD pct_time_in_dark 101487	KOMP	124	both	67-73wks	N=8	2021

JaxKOMP-LAP:167	JaxKOMP-LAP	light-dark box	(none)	percentage of total time in light zone, 20 min test [%] pct_light_LD pct_time_in_light 101488	KOMP	124	both	67-73wks	N=8	2021

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