Project measure / variable:   Seburn1   aa_light

ID, description, units MPD:9227   aa_light   ambulatory activity, beam breaks per min, 3 day test   [n/min]  light  
Data set, strains Seburn1   inbred   16 strains     sex: both     age: 7-9wks
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  STRAIN COMPARISON PLOT
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Seburn1 - ambulatory activity, beam breaks per min, 3 day test light



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested15 strains16 strains
Mean of the strain means8.73   n/min 7.58   n/min
Median of the strain means7.21   n/min 6.18   n/min
SD of the strain means± 4.76 ± 4.09
Coefficient of variation (CV)0.545 0.540
Min–max range of strain means3.01   –   18.2   n/min 3.04   –   16.8   n/min
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 52.8563 52.8563 4.293 0.0395
strain 14 4137.4125 295.5295 24.003 < 0.0001
sex:strain 14 326.9658 23.3547 1.8969 0.0282
Residuals 210 2585.5645 12.3122


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.01 1.13   8 0.401 0.377 1.84, 4.82 -1.2
129S1/SvImJ m 4.01 1.35   8 0.476 0.336 1.99, 6.49 -0.87
A/J f 5.04 1.46   8 0.515 0.289 2.94, 7.76 -0.78
A/J m 4.42 1.09   8 0.386 0.248 3.09, 6.47 -0.77
AKR/J f 6.74 1.29   8 0.455 0.191 5.18, 8.85 -0.42
AKR/J m 5.61 0.864   8 0.305 0.154 4.47, 7.13 -0.48
BALB/cJ f 8.31 2.59   8 0.916 0.312 5.93, 14.0 -0.09
BALB/cJ m 9.83 1.63   8 0.575 0.165 7.42, 13.0 0.55
BTBR T+ Itpr3tf/J f 8.36 1.54   8 0.543 0.184 5.56, 10.7 -0.08
BTBR T+ Itpr3tf/J m 8.31 1.66   8 0.589 0.2 6.27, 11.1 0.18
C3H/HeJ f 4.69 0.977   8 0.346 0.208 3.25, 6.08 -0.85
C3H/HeJ m 3.59 0.763   8 0.27 0.213 2.62, 4.57 -0.98
C57BL/6J f 15.8 3.01   8 1.07 0.191 12.6, 21.8 1.49
C57BL/6J m 9.98 2.06   8 0.729 0.207 6.32, 11.8 0.59
CAST/EiJ f 18.2 7.25   8 2.56 0.398 8.99, 25.6 1.99
CAST/EiJ m 12.6 6.59   8 2.33 0.524 5.28, 26.0 1.23
CBA/J f 7.21 1.32   8 0.468 0.184 5.3, 9.75 -0.32
CBA/J m 5.62 1.45   8 0.513 0.258 3.26, 7.64 -0.48
FVB/NJ f 13.6 5.7   8 2.02 0.419 5.22, 22.3 1.02
FVB/NJ m 16.8 12.4   8 4.37 0.735 8.44, 46.5 2.26
LP/J f 4.14 1.69   8 0.598 0.408 1.17, 6.42 -0.96
LP/J m 4.21 1.28   8 0.453 0.304 2.07, 5.91 -0.82
NOD/ShiLtJ f 15.5 4.08   8 1.44 0.264 8.9, 20.0 1.42
NOD/ShiLtJ m 13.9 2.6   8 0.92 0.187 9.56, 16.9 1.55
NZB/BlNJ f 5.66 1.61   8 0.571 0.285 3.43, 7.27 -0.64
NZB/BlNJ m 3.04 1.56   8 0.55 0.512 1.63, 6.39 -1.11
PL/J f 5.95 1.47   8 0.52 0.247 3.84, 8.2 -0.58
PL/J m 6.73 0.935   8 0.33 0.139 4.65, 7.79 -0.21
SJL/J m 4.45 0.899   8 0.318 0.202 3.49, 6.22 -0.76
SWR/J f 8.68 2.28   8 0.807 0.263 6.2, 13.3 -0.01
SWR/J m 8.12 2.1   8 0.744 0.259 5.59, 11.4 0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.0088 1.2406 5.4543 0.5632
129S1/SvImJ m 4.0063 1.2406 6.4518 1.5607
A/J f 5.045 1.2406 7.4906 2.5994
A/J m 4.415 1.2406 6.8606 1.9694
AKR/J f 6.7362 1.2406 9.1818 4.2907
AKR/J m 5.6075 1.2406 8.0531 3.1619
BALB/cJ f 8.3063 1.2406 10.7518 5.8607
BALB/cJ m 9.835 1.2406 12.2806 7.3894
BTBR T+ Itpr3tf/J f 8.3588 1.2406 10.8043 5.9132
BTBR T+ Itpr3tf/J m 8.3075 1.2406 10.7531 5.8619
C3H/HeJ f 4.6888 1.2406 7.1343 2.2432
C3H/HeJ m 3.5875 1.2406 6.0331 1.1419
C57BL/6J f 15.7875 1.2406 18.2331 13.3419
C57BL/6J m 9.9825 1.2406 12.4281 7.5369
CAST/EiJ f 18.2212 1.2406 20.6668 15.7757
CAST/EiJ m 12.5875 1.2406 15.0331 10.1419
CBA/J f 7.2113 1.2406 9.6568 4.7657
CBA/J m 5.6175 1.2406 8.0631 3.1719
FVB/NJ f 13.605 1.2406 16.0506 11.1594
FVB/NJ m 16.8425 1.2406 19.2881 14.3969
LP/J f 4.14 1.2406 6.5856 1.6944
LP/J m 4.2138 1.2406 6.6593 1.7682
NOD/ShiLtJ f 15.4875 1.2406 17.9331 13.0419
NOD/ShiLtJ m 13.92 1.2406 16.3656 11.4744
NZB/BlNJ f 5.6637 1.2406 8.1093 3.2182
NZB/BlNJ m 3.0388 1.2406 5.4843 0.5932
PL/J f 5.945 1.2406 8.3906 3.4994
PL/J m 6.7263 1.2406 9.1718 4.2807
SWR/J f 8.6837 1.2406 11.1293 6.2382
SWR/J m 8.1225 1.2406 10.5681 5.6769


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.5075 0.8772 5.2368 1.7782
A/J both 4.73 0.8772 6.4593 3.0007
AKR/J both 6.1719 0.8772 7.9012 4.4426
BALB/cJ both 9.0706 0.8772 10.7999 7.3413
BTBR T+ Itpr3tf/J both 8.3331 0.8772 10.0624 6.6038
C3H/HeJ both 4.1381 0.8772 5.8674 2.4088
C57BL/6J both 12.885 0.8772 14.6143 11.1557
CAST/EiJ both 15.4044 0.8772 17.1337 13.6751
CBA/J both 6.4144 0.8772 8.1437 4.6851
FVB/NJ both 15.2238 0.8772 16.953 13.4945
LP/J both 4.1769 0.8772 5.9062 2.4476
NOD/ShiLtJ both 14.7037 0.8772 16.433 12.9745
NZB/BlNJ both 4.3513 0.8772 6.0805 2.622
PL/J both 6.3356 0.8772 8.0649 4.6063
SWR/J both 8.4031 0.8772 10.1324 6.6738




  GWAS USING LINEAR MIXED MODELS