Project measure / variable:   CSNA03   movement_w_gray_in

ID, description, units MPD:90301   movement_w_gray_in   percentage of movement counts in novel zone, including center gray zone (novelty preference), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 12wks
Procedure conditioned place preference test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of movement counts in novel zone, including center gray zone (novelty preference), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means75.01   % 75.32   %
Median of the strain means76.3   % 74.86   %
SD of the strain means± 6.726 ± 5.9558
Coefficient of variation (CV)0.0897 0.0791
Min–max range of strain means65.66   –   86.08   % 66.04   –   84.32   %
Mean sample size per strain40.4   mice 39.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 39.5871 39.5871 0.2114 0.6458
strain 9 27805.044 3089.4493 16.4991 < 0.0001
sex:strain 9 695.3439 77.2604 0.4126 0.9288
Residuals 777 145492.864 187.2495


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 86.08 11.357   42 1.7524 0.1319 53.15, 100.0 1.65
129S1/SvImJ m 84.32 19.496   45 2.9062 0.2312 1.1204, 100.0 1.51
A/J f 74.0 14.433   60 1.8633 0.195 40.607, 100.0 -0.15
A/J m 73.57 18.579   61 2.3788 0.2525 2.1352, 100.0 -0.29
C57BL/6J f 65.66 12.42   58 1.6308 0.1891 34.949, 90.61 -1.39
C57BL/6J m 66.04 11.69   55 1.5763 0.177 44.262, 100.0 -1.56
C57BL/6NJ f 66.8 17.491   9 5.8303 0.2619 39.187, 94.68 -1.22
C57BL/6NJ m 67.68 10.095   10 3.1924 0.1492 52.59, 84.4 -1.28
CAST/EiJ f 68.12 16.367   31 2.9396 0.2403 0.95238, 86.16 -1.02
CAST/EiJ m 71.55 15.094   28 2.8525 0.211 11.667, 92.47 -0.63
DBA/2J f 78.59 14.578   24 2.9757 0.1855 22.034, 100.0 0.53
DBA/2J m 75.08 15.178   23 3.1648 0.2021 39.236, 97.86 -0.04
NOD/ShiLtJ f 78.82 14.504   42 2.238 0.184 2.8314, 95.32 0.57
NOD/ShiLtJ m 78.1 13.88   39 2.2225 0.1777 7.1192, 96.48 0.47
NZO/HlLtJ f 72.47 16.652   44 2.5104 0.2298 24.941, 99.7 -0.38
NZO/HlLtJ m 74.64 11.532   43 1.7586 0.1545 52.24, 100.0 -0.11
PWK/PhJ f 80.76 8.6197   43 1.3145 0.1067 40.0, 93.96 0.85
PWK/PhJ m 80.53 7.8632   42 1.2133 0.0976 58.02, 99.5 0.87
WSB/EiJ f 78.81 8.7493   51 1.2251 0.111 47.752, 99.51 0.56
WSB/EiJ m 81.73 9.1625   47 1.3365 0.1121 63.56, 100.0 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 86.084047619 2.111473776 90.2289166318 81.9391786063
129S1/SvImJ m 84.3161644444 2.0398774651 88.3204883396 80.3118405493
A/J f 74.0010333333 1.7665857054 77.4688795515 70.5331871152
A/J m 73.5692655738 1.7520456581 77.0085693624 70.1299617852
C57BL/6J f 65.6628965517 1.7967859393 69.1900264868 62.1357666167
C57BL/6J m 66.0428181818 1.8451385919 69.664865427 62.4207709366
C57BL/6NJ f 66.7955555556 4.5613046778 75.749495989 57.8416151221
C57BL/6NJ m 67.681 4.3272335652 76.1754537409 59.1865462591
CAST/EiJ f 68.1170122581 2.4577035129 72.9415377857 63.2924867304
CAST/EiJ m 71.5473214286 2.5860166782 76.6237284945 66.4709143627
DBA/2J f 78.5893333333 2.7932172555 84.0724796456 73.106187021
DBA/2J m 75.082826087 2.8532933167 80.6839030159 69.481749158
NOD/ShiLtJ f 78.8198428571 2.111473776 82.9647118699 74.6749738444
NOD/ShiLtJ m 78.0969025641 2.191179891 82.3982364168 73.7955687114
NZO/HlLtJ f 72.4743409091 2.0629276597 76.5239128381 68.4247689801
NZO/HlLtJ m 74.6390697674 2.0867773267 78.7354591123 70.5426804226
PWK/PhJ f 80.7630232558 2.0867773267 84.8594126006 76.666633911
PWK/PhJ m 80.5330952381 2.111473776 84.6779642508 76.3882262254
WSB/EiJ f 78.8086666667 1.9161312293 82.5700740054 75.0472593279
WSB/EiJ m 81.730212766 1.9960040042 85.6484121015 77.8120134304


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 85.2001060317 1.4679425721 88.0817092743 82.3185027892
A/J both 73.7851494536 1.2440346702 76.2272166078 71.3430822993
C57BL/6J both 65.8528573668 1.2877282453 68.3806959606 63.325018773
C57BL/6NJ both 67.2382777778 3.1436623026 73.4093553507 61.0672002049
CAST/EiJ both 69.8321668433 1.7838013354 73.3338077182 66.3305259685
DBA/2J both 76.8360797101 1.9964559467 80.7551662187 72.9169932016
NOD/ShiLtJ both 78.4583727106 1.521478789 81.4450687131 75.4716767082
NZO/HlLtJ both 73.5567053383 1.4671664987 76.436785132 70.6766255445
PWK/PhJ both 80.648059247 1.4843315935 83.5618344955 77.7342839984
WSB/EiJ both 80.2694397163 1.3834369223 82.9851565278 77.5537229048




  GWAS USING LINEAR MIXED MODELS