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Project measure / variable:   CSNA03   activity_w_gray_in

ID, description, units MPD:90295   activity_w_gray_in   percentage of activity counts in novel zone, including center gray zone (novelty preference), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 12wks
Procedure conditioned place preference test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of activity counts in novel zone, including center gray zone (novelty preference), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means59.66   % 60.36   %
Median of the strain means57.2   % 58.98   %
SD of the strain means± 6.0311 ± 6.4597
Coefficient of variation (CV)0.1011 0.107
Min–max range of strain means53.38   –   68.11   % 53.24   –   70.1   %
Mean sample size per strain40.4   mice 39.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 204.6482 204.6482 1.1793 0.2778
strain 9 28564.6729 3173.8525 18.29 < 0.0001
sex:strain 9 661.7075 73.5231 0.4237 0.9228
Residuals 777 134832.1008 173.5291


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 67.6 11.873   42 1.832 0.1756 42.955, 95.97 1.32
129S1/SvImJ m 66.28 19.367   45 2.887 0.2922 0.81301, 100.0 0.92
A/J f 54.54 14.424   60 1.8621 0.2644 10.507, 86.56 -0.85
A/J m 53.24 18.132   61 2.3215 0.3405 1.631, 82.94 -1.1
C57BL/6J f 53.38 11.225   58 1.4739 0.2103 27.362, 81.73 -1.04
C57BL/6J m 55.36 10.184   55 1.3732 0.1839 29.524, 76.62 -0.77
C57BL/6NJ f 55.81 17.629   9 5.8762 0.3158 30.007, 79.29 -0.64
C57BL/6NJ m 53.49 14.356   10 4.5399 0.2684 20.0, 68.17 -1.06
CAST/EiJ f 54.74 12.921   31 2.3207 0.236 0.61224, 74.66 -0.82
CAST/EiJ m 55.04 12.065   28 2.28 0.2192 8.2931, 74.21 -0.82
DBA/2J f 60.14 16.313   24 3.33 0.2712 11.029, 82.45 0.08
DBA/2J m 60.29 14.624   23 3.0494 0.2426 32.143, 80.1 -0.01
NOD/ShiLtJ f 68.07 14.269   42 2.2018 0.2096 3.7257, 88.99 1.39
NOD/ShiLtJ m 69.39 13.229   39 2.1183 0.1906 9.6, 91.65 1.4
NZO/HlLtJ f 55.64 13.978   44 2.1072 0.2512 17.669, 80.79 -0.67
NZO/HlLtJ m 57.68 9.9222   43 1.5131 0.172 38.421, 86.57 -0.42
PWK/PhJ f 68.11 10.89   43 1.6608 0.1599 26.466, 81.76 1.4
PWK/PhJ m 70.1 7.298   42 1.1261 0.1041 51.51, 83.92 1.51
WSB/EiJ f 58.6 9.7497   51 1.3652 0.1664 35.167, 81.98 -0.18
WSB/EiJ m 62.75 9.5671   47 1.3955 0.1525 43.951, 80.48 0.37


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 67.6026428571 2.0326448128 71.5927688981 63.6125168162
129S1/SvImJ m 66.2787624444 1.9637214515 70.1335904261 62.4239344628
A/J f 54.54285 1.700632663 57.8812289593 51.2044710407
A/J m 53.2439836066 1.6866354483 56.5548857286 49.9330814845
C57BL/6J f 53.3823103448 1.7297054128 56.7777597452 49.9868609445
C57BL/6J m 55.3622727273 1.7762528857 58.8490958308 51.8754496237
C57BL/6NJ f 55.8134444444 4.3910146545 64.4331018529 47.193787036
C57BL/6NJ m 53.4865 4.1656822642 61.6638250183 45.3091749817
CAST/EiJ f 54.74404 2.3659485397 59.3884485166 50.0996314834
CAST/EiJ m 55.0398607143 2.4894713098 59.9267471192 50.1529743094
DBA/2J f 60.1433333333 2.6889363392 65.4217739354 54.8648927312
DBA/2J m 60.2862173913 2.7467695434 65.678185833 54.8942489496
NOD/ShiLtJ f 68.0650404762 2.0326448128 72.0551665171 64.0749144352
NOD/ShiLtJ m 69.3925641026 2.1093752099 73.5333135843 65.2518146208
NZO/HlLtJ f 55.6408181818 1.9859110988 59.5392049244 51.7424314393
NZO/HlLtJ m 57.6785348837 2.0088703714 61.6219911784 53.7350785891
PWK/PhJ f 68.1107674419 2.0088703714 72.0542237365 64.1673111472
PWK/PhJ m 70.1045238095 2.0326448128 74.0946498505 66.1143977686
WSB/EiJ f 58.599627451 1.8445951108 62.220607831 54.9786470709
WSB/EiJ m 62.7484042553 1.9214859457 66.5203230191 58.9764854915


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 66.9407026508 1.4131389594 69.714725208 64.1666800936
A/J both 53.8934168033 1.1975903504 56.2443127462 51.5425208604
C57BL/6J both 54.3722915361 1.2396526861 56.8057567601 51.938826312
C57BL/6NJ both 54.6499722222 3.0262980034 60.5906611195 48.709283325
CAST/EiJ both 54.8919503571 1.7172055712 58.2628622962 51.5210384181
DBA/2J both 60.2147753623 1.9219210156 63.9875481777 56.4420025469
NOD/ShiLtJ both 68.7288022894 1.4646764754 71.6039941131 65.8536104656
NZO/HlLtJ both 56.6596765328 1.4123918597 59.432232517 53.8871205486
PWK/PhJ both 69.1076456257 1.4289161193 71.9126390914 66.30265216
WSB/EiJ both 60.6740158531 1.3317882116 63.2883451206 58.0596865857




  GWAS USING LINEAR MIXED MODELS