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Project measure / variable:   CSNA03   time_w_gray_in

ID, description, units MPD:90289   time_w_gray_in   percentage of time spent in novel zone, including center gray zone (novelty preference), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 12wks
Procedure conditioned place preference test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of time spent in novel zone, including center gray zone (novelty preference), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means56.04   % 56.64   %
Median of the strain means53.12   % 54.38   %
SD of the strain means± 7.0171 ± 7.7863
Coefficient of variation (CV)0.1252 0.1375
Min–max range of strain means50.52   –   69.85   % 49.526   –   72.7   %
Mean sample size per strain40.4   mice 39.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 214.1035 214.1035 1.0843 0.2981
strain 9 38536.9383 4281.882 21.6854 < 0.0001
sex:strain 9 1283.0936 142.566 0.722 0.689
Residuals 777 153422.1109 197.4545


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 62.88 15.213   42 2.3474 0.242 28.614, 97.22 0.97
129S1/SvImJ m 61.88 21.368   45 3.1853 0.3453 0.79168, 99.98 0.67
A/J f 50.62 16.724   60 2.1591 0.3304 1.2517, 83.22 -0.77
A/J m 49.526 19.075   61 2.4423 0.3851 1.2517, 80.72 -0.91
C57BL/6J f 51.39 9.7652   58 1.2822 0.19 32.044, 75.55 -0.66
C57BL/6J m 53.17 10.801   55 1.4565 0.2031 23.732, 73.72 -0.45
C57BL/6NJ f 50.52 17.634   9 5.8779 0.349 25.31, 82.46 -0.79
C57BL/6NJ m 50.09 14.669   10 4.6388 0.2929 16.318, 69.02 -0.84
CAST/EiJ f 52.52 10.37   31 1.8625 0.1975 23.707, 71.01 -0.5
CAST/EiJ m 49.814 12.338   28 2.3317 0.2477 8.3567, 68.31 -0.88
DBA/2J f 53.73 18.573   24 3.7913 0.3457 6.5317, 87.76 -0.33
DBA/2J m 50.79 16.882   23 3.5201 0.3324 19.998, 80.73 -0.75
NOD/ShiLtJ f 64.51 15.454   42 2.3846 0.2396 8.0251, 88.58 1.21
NOD/ShiLtJ m 65.1 13.945   39 2.233 0.2142 5.8017, 86.39 1.09
NZO/HlLtJ f 53.85 13.756   44 2.0738 0.2554 20.047, 76.9 -0.31
NZO/HlLtJ m 57.74 8.7683   43 1.3371 0.1518 28.498, 78.78 0.14
PWK/PhJ f 69.85 11.106   43 1.6936 0.159 21.827, 84.83 1.97
PWK/PhJ m 72.7 8.093   42 1.2488 0.1113 45.747, 85.72 2.06
WSB/EiJ f 50.57 12.343   51 1.7283 0.2441 19.162, 73.93 -0.78
WSB/EiJ m 55.59 9.0648   47 1.3222 0.1631 34.622, 73.89 -0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 62.8761904762 2.1682473399 67.1325072316 58.6198737208
129S1/SvImJ m 61.8770306667 2.0947259388 65.9890233102 57.7650380231
A/J f 50.6212116667 1.814085877 54.1823017562 47.0601215772
A/J m 49.5264540984 1.7991548751 53.058234306 45.9946738907
C57BL/6J f 51.3878965517 1.8450981384 55.0098643859 47.7659287175
C57BL/6J m 53.1732909091 1.894750903 56.8927282016 49.4538536165
C57BL/6NJ f 50.5211111111 4.6839495934 59.7158061851 41.3264160372
C57BL/6NJ m 50.0876 4.4435847481 58.8104536473 41.3647463527
CAST/EiJ f 52.5178709677 2.5237865442 57.4721189251 47.5636230103
CAST/EiJ m 49.8137035714 2.6555498095 55.0266056886 44.6008014543
DBA/2J f 53.7278208333 2.8683216212 59.3583986513 48.0972430154
DBA/2J m 50.7899565217 2.9300130148 56.5416358891 45.0382771544
NOD/ShiLtJ f 64.5111690476 2.1682473399 68.767485803 60.2548522922
NOD/ShiLtJ m 65.1029410256 2.2500966027 69.5199296666 60.6859523847
NZO/HlLtJ f 53.8505227273 2.1183959097 58.0089800394 49.6920654152
NZO/HlLtJ m 57.7435581395 2.1428868495 61.9500916998 53.5370245793
PWK/PhJ f 69.8502093023 2.1428868495 74.0567428626 65.6436757421
PWK/PhJ m 72.702 2.1682473399 76.9583167554 68.4456832446
WSB/EiJ f 50.5738431373 1.9676523991 54.4363876545 46.71129862
WSB/EiJ m 55.5882340426 2.0496728028 59.6117863989 51.5646816862


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 62.3766105714 1.5074127907 65.3356947128 59.4175264301
A/J both 50.0738328825 1.2774844259 52.5815626357 47.5661031293
C57BL/6J both 52.2805937304 1.3223528391 54.8764011561 49.6847863047
C57BL/6NJ both 50.3043555556 3.2281894774 56.6413618136 43.9673492976
CAST/EiJ both 51.1657872696 1.8317644029 54.7615806906 47.5699938486
DBA/2J both 52.2588886775 2.0501368972 56.2833520613 48.2344252938
NOD/ShiLtJ both 64.8070550366 1.5623884959 67.8740576848 61.7400523884
NZO/HlLtJ both 55.7970404334 1.5066158502 58.7545601633 52.8395207035
PWK/PhJ both 71.2761046512 1.5242424821 74.2682258434 68.2839834589
WSB/EiJ both 53.0810385899 1.4206349427 55.8697759257 50.2923012541




  GWAS USING LINEAR MIXED MODELS