Project measure / variable:   CSNA03   vert_counts_light_LD_in

ID, description, units MPD:90253   vert_counts_light_LD_in   vertical counts in light, 20 min test (LD box), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - vertical counts in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means78.71   n 107.1   n
Median of the strain means85.87   n 108.0   n
SD of the strain means± 42.877 ± 65.3
Coefficient of variation (CV)0.5448 0.6099
Min–max range of strain means6.449   –   140.9   n 10.959   –   193.6   n
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 119231.2883 119231.2883 24.4861 < 0.0001
strain 9 2283315.0639 253701.6738 52.1018 < 0.0001
sex:strain 9 98823.5187 10980.391 2.255 0.0171
Residuals 840 4090248.8686 4869.3439


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.449 17.834   49 2.5477 2.7654 -1.69
129S1/SvImJ m 10.959 33.846   49 4.8352 3.0884 -1.47
A/J f 32.433 49.48   60 6.3879 1.5256 -1.08
A/J m 38.525 78.65   61 10.07 2.0415 -1.05
C57BL/6J f 117.3 85.69   60 11.062 0.7304 7.0, 436.0 0.9
C57BL/6J m 162.8 86.23   59 11.226 0.5298 33.0, 431.0 0.85
C57BL/6NJ f 111.3 66.86   13 18.543 0.6006 29.0, 273.0 0.76
C57BL/6NJ m 189.4 62.93   13 17.453 0.3323 114.0, 332.0 1.26
CAST/EiJ f 96.42 69.28   33 12.06 0.7185 5.0, 326.0 0.41
CAST/EiJ m 137.4 104.6   30 19.105 0.7614 2.0, 438.0 0.46
DBA/2J f 101.0 38.693   24 7.8981 0.3831 36.0, 199.0 0.52
DBA/2J m 113.5 59.87   24 12.221 0.5277 39.0, 253.0 0.1
NOD/ShiLtJ f 140.9 96.17   47 14.028 0.6824 2.0, 475.0 1.45
NOD/ShiLtJ m 193.6 97.77   44 14.739 0.505 89.0, 470.0 1.33
NZO/HlLtJ f 35.404 25.83   47 3.7677 0.7296 3.0, 135.0 -1.01
NZO/HlLtJ m 30.696 19.014   46 2.8035 0.6195 1.0, 77.0 -1.17
PWK/PhJ f 75.32 57.1   47 8.3288 0.7581 23.0, 293.0 -0.08
PWK/PhJ m 91.25 62.34   48 8.9982 0.6832 -0.24
WSB/EiJ f 70.56 70.85   55 9.5531 1.004 18.0, 380.0 -0.19
WSB/EiJ m 102.5 96.3   51 13.484 0.9396 -0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.4489795918 9.9686691753 26.0154049101 -13.1174457264
129S1/SvImJ m 10.9591836735 9.9686691753 30.5256089917 -8.6072416448
A/J f 32.4333333333 9.0086475966 50.1154358606 14.7512308061
A/J m 38.5245901639 8.934501088 56.0611585083 20.9880218196
C57BL/6J f 117.3166666667 9.0086475966 134.9987691939 99.6345641394
C57BL/6J m 162.7627118644 9.084671287 180.5940330922 144.9313906366
C57BL/6NJ f 111.3076923077 19.3536796168 149.2949421798 73.3204424356
C57BL/6NJ m 189.3846153846 19.3536796168 227.3718652567 151.3973655125
CAST/EiJ f 96.4242424242 12.1472579412 120.2667846081 72.5817002404
CAST/EiJ m 137.4333333333 12.7401516098 162.4396025386 112.4270641281
DBA/2J f 101.0 14.2439225216 128.9578589033 73.0421410967
DBA/2J m 113.4583333333 14.2439225216 141.4161922367 85.50047443
NOD/ShiLtJ f 140.9361702128 10.1785589115 160.9145654516 120.9577749739
NOD/ShiLtJ m 193.5909090909 10.5198339634 214.2391563129 172.9426618689
NZO/HlLtJ f 35.4042553191 10.1785589115 55.382650558 15.4258600803
NZO/HlLtJ m 30.6956521739 10.2886005843 50.8900363411 10.5012680067
PWK/PhJ f 75.3191489362 10.1785589115 95.297544175 55.3407536973
PWK/PhJ m 91.25 10.0719742057 111.019191618 71.480808382
WSB/EiJ f 70.5636363636 9.4092255417 89.0319901255 52.0952826018
WSB/EiJ m 102.4901960784 9.7712502373 121.6691290606 83.3112630963


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8.7040816327 7.0489135733 22.5396336588 -5.1314703935
A/J both 35.4789617486 6.3439152188 47.930748559 23.0271749383
C57BL/6J both 140.0396892655 6.3970107064 152.5956914807 127.4836870503
C57BL/6NJ both 150.3461538462 13.6851180979 177.2071958294 123.485111863
CAST/EiJ both 116.9287878788 8.801524563 134.2043509474 99.6532248101
DBA/2J both 107.2291666667 10.0719742057 126.9983582847 87.4599750487
NOD/ShiLtJ both 167.2635396518 7.3189816254 181.629179123 152.8979001807
NZO/HlLtJ both 33.0499537465 7.2363382228 47.2533813981 18.846526095
PWK/PhJ both 83.2845744681 7.1597438138 97.3376632171 69.2314857191
WSB/EiJ both 86.526916221 6.782530068 99.8396128018 73.2142196403




  GWAS USING LINEAR MIXED MODELS