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Project measure / variable:   CSNA03   jump_counts_light_LD_in

ID, description, units MPD:90241   jump_counts_light_LD_in   jump counts in light, 20 min test (LD box), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - jump counts in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means557.4   n 479.1   n
Median of the strain means669.2   n 534.6   n
SD of the strain means± 372.0 ± 332.8
Coefficient of variation (CV)0.6673 0.6945
Min–max range of strain means49.837   –   1051.0   n 43.551   –   958.3   n
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1693336.9729 1693336.9729 34.7374 < 0.0001
strain 9 99689267.7748 11076585.3083 227.227 < 0.0001
sex:strain 9 740960.2238 82328.9138 1.6889 0.0875
Residuals 840 40947299.2738 48746.7848


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 49.837 122.0   49 17.433 2.4487 -1.36
129S1/SvImJ m 43.551 72.32   49 10.331 1.6606 -1.31
A/J f 115.2 227.2   60 29.334 1.9721 -1.19
A/J m 78.7 176.9   61 22.645 2.2472 -1.2
C57BL/6J f 725.7 219.5   60 28.339 0.3025 135.0, 1202.0 0.45
C57BL/6J m 595.4 182.0   59 23.699 0.3057 246.0, 1234.0 0.35
C57BL/6NJ f 757.0 286.7   13 79.51 0.3787 177.0, 1222.0 0.54
C57BL/6NJ m 759.2 261.8   13 72.61 0.3448 346.0, 1132.0 0.84
CAST/EiJ f 1013.0 286.9   33 49.95 0.2832 189.0, 1515.0 1.22
CAST/EiJ m 805.5 278.6   30 50.87 0.3459 2.0, 1188.0 0.98
DBA/2J f 422.0 149.3   24 30.475 0.3538 138.0, 874.0 -0.36
DBA/2J m 343.0 187.3   24 38.233 0.5461 87.0, 720.0 -0.41
NOD/ShiLtJ f 1051.0 449.2   47 65.52 0.4274 22.0, 2701.0 1.33
NOD/ShiLtJ m 958.3 256.4   44 38.659 0.2676 506.0, 1401.0 1.44
NZO/HlLtJ f 89.72 129.9   47 18.952 1.4481 1.0, 900.0 -1.26
NZO/HlLtJ m 71.33 46.802   46 6.9005 0.6562 1.0, 221.0 -1.23
PWK/PhJ f 612.8 262.9   47 38.341 0.4289 2.0, 1537.0 0.15
PWK/PhJ m 473.8 165.1   48 23.835 0.3486 -0.02
WSB/EiJ f 737.8 198.7   55 26.798 0.2694 68.0, 1176.0 0.48
WSB/EiJ m 662.4 232.5   51 32.55 0.3509 0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 49.8367346939 31.5409629509 111.7450882757 -12.071618888
129S1/SvImJ m 43.5510204082 31.5409629509 105.45937399 -18.3573331737
A/J f 115.2166666667 28.5034456542 171.1630052299 59.2703281035
A/J m 78.7049180328 28.2688454042 134.1907850736 23.219050992
C57BL/6J f 725.6666666667 28.5034456542 781.6130052299 669.7203281035
C57BL/6J m 595.3898305085 28.7439853251 651.8082984426 538.9713625744
C57BL/6NJ f 757.0 61.2352241831 877.1920155795 636.8079844206
C57BL/6NJ m 759.2307692308 61.2352241831 879.4227848102 639.0387536513
CAST/EiJ f 1013.2424242424 38.4340382796 1088.6804517717 937.8043967132
CAST/EiJ m 805.5333333333 40.3099594186 884.6534040945 726.4132625721
DBA/2J f 422.0416666667 45.0679047151 510.50059497 333.5827383634
DBA/2J m 342.9583333333 45.0679047151 431.4172616366 254.49940503
NOD/ShiLtJ f 1050.9574468085 32.2050560487 1114.1692770906 987.7456165264
NOD/ShiLtJ m 958.3409090909 33.2848535202 1023.6721573426 893.0096608392
NZO/HlLtJ f 89.7234042553 32.2050560487 152.9352345374 26.5115739732
NZO/HlLtJ m 71.3260869565 32.5532289355 135.2213082376 7.4308656754
PWK/PhJ f 612.7872340426 32.2050560487 675.9990643246 549.5754037605
PWK/PhJ m 473.75 31.8678210379 536.2999080598 411.2000919402
WSB/EiJ f 737.7636363636 29.7708780369 796.197681222 679.3295915053
WSB/EiJ m 662.4117647059 30.9163275759 723.0940888948 601.7294405169


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 46.693877551 22.3028287878 90.4696941809 2.9180609212
A/J both 96.9607923497 20.072207369 136.3583628329 57.5632218666
C57BL/6J both 660.5282485876 20.2402019909 700.2555575911 620.800939584
C57BL/6NJ both 758.1153846154 43.2998422673 843.1039738761 673.1267953547
CAST/EiJ both 909.3878787879 27.8481064294 964.0479226837 854.7278348921
DBA/2J both 382.5 31.8678210379 445.0499080598 319.9500919402
NOD/ShiLtJ both 1004.6491779497 23.1573266428 1050.1021962371 959.1961596623
NZO/HlLtJ both 80.5247456059 22.8958421402 125.4645241717 35.5849670401
PWK/PhJ both 543.2686170213 22.6534967102 587.7327218866 498.804512156
WSB/EiJ both 700.0877005348 21.4599888739 742.209197622 657.9662034475




  GWAS USING LINEAR MIXED MODELS