Project measure / variable:   CSNA03   pct_stereotypic_counts_light_LD_do

ID, description, units MPD:90237   pct_stereotypic_counts_light_LD_do   percentage of stereotypic counts in light, 20 min test (LD box), DO   [%]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
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Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means39.853   % 37.692   %
Median of the strain means43.529   % 41.792   %
SD of the strain means± 9.9782 ± 11.274
Coefficient of variation (CV)0.2504 0.2991
Min–max range of strain means18.431   –   51.94   % 20.549   –   52.42   %
Mean sample size per strain210.4   mice 199.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1087.9881 1087.9881 6.165 0.0131
strain 8 98813.3181 12351.6648 69.9897 < 0.0001
sex:strain 8 4960.0054 620.0007 3.5132 0.0005
Residuals 3667 647145.8115 176.4783


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 35.654 39.754   49 5.6792 1.115 0.62981, 100.0 -0.42
129S1/SvImJ m 29.795 34.693   49 4.9561 1.1644 -0.7
A/J f 33.232 35.336   60 4.5619 1.0633 -0.66
A/J m 21.643 28.854   61 3.6944 1.3332 0.1493, 100.0 -1.42
C57BL/6J f 43.755 14.171   60 1.8295 0.3239 18.94, 100.0 0.39
C57BL/6J m 42.094 8.7755   59 1.1425 0.2085 23.104, 70.5 0.39
CAST/EiJ f 49.205 10.228   33 1.7805 0.2079 18.189, 82.76 0.94
CAST/EiJ m 48.601 12.796   30 2.3362 0.2633 0.63458, 84.62 0.97
J:DO f 43.546 10.901   1496 0.28183 0.2503 0.37
J:DO m 43.0 10.519   1403 0.28084 0.2446 0.47
NOD/ShiLtJ f 51.94 11.091   47 1.6178 0.2135 2.4759, 72.0 1.21
NOD/ShiLtJ m 52.42 7.3608   44 1.1097 0.1404 38.134, 76.48 1.31
NZO/HlLtJ f 18.431 8.5649   47 1.2493 0.4647 2.4764, 49.528 -2.15
NZO/HlLtJ m 20.549 8.5093   46 1.2546 0.4141 1.6344, 37.929 -1.52
PWK/PhJ f 43.529 11.1   47 1.619 0.255 25.096, 82.15 0.37
PWK/PhJ m 39.331 7.7915   48 1.1246 0.1981 0.35249, 54.06 0.15
WSB/EiJ f 39.389 8.8955   55 1.1995 0.2258 23.552, 77.94 -0.05
WSB/EiJ m 41.792 10.276   51 1.4389 0.2459 16.985, 95.24 0.36


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 35.6539277551 1.8977874806 39.3747509906 31.9331045196
129S1/SvImJ m 29.7951334694 1.8977874806 33.5159567049 26.0743102339
A/J f 33.2324501667 1.7150231716 36.5949436659 29.8699566674
A/J m 21.6428401639 1.7009075146 24.9776583489 18.308021979
C57BL/6J f 43.7549666667 1.7150231716 47.1174601659 40.3924731674
C57BL/6J m 42.0937627119 1.7294961976 45.4846321867 38.702893237
CAST/EiJ f 49.205030303 2.3125367729 53.7390156125 44.6710449936
CAST/EiJ m 48.601086 2.4254090291 53.35636991 43.84580209
J:DO f 43.5463239505 0.3434628906 44.2197211126 42.8729267884
J:DO m 43.0000028368 0.3546637338 43.6953604966 42.3046451769
NOD/ShiLtJ f 51.9384446809 1.9377452831 55.7376096281 48.1392797336
NOD/ShiLtJ m 52.4186363636 2.0027155925 56.345182822 48.4920899053
NZO/HlLtJ f 18.430612766 1.9377452831 22.2297777132 14.6314478187
NZO/HlLtJ m 20.5489630435 1.9586944896 24.3892012379 16.708724849
PWK/PhJ f 43.5293617021 1.9377452831 47.3285266494 39.7301967548
PWK/PhJ m 39.330989375 1.9174541974 43.0903713941 35.5716073559
WSB/EiJ f 39.3894181818 1.7912832818 42.9014281009 35.8774082627
WSB/EiJ m 41.792 1.860203809 45.439136271 38.144863729


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 32.7245306122 1.3419383968 35.3555499537 30.0935112708
A/J both 27.4376451653 1.2077241875 29.8055226357 25.0697676949
C57BL/6J both 42.9243646893 1.2178322521 45.3120601435 40.5366692351
CAST/EiJ both 48.9030581515 1.6755920808 52.1882426155 45.6178736875
J:DO both 43.2731633937 0.2468568012 43.7571535829 42.7891732044
NOD/ShiLtJ both 52.1785405222 1.3933526587 54.9103632373 49.4467178072
NZO/HlLtJ both 19.4897879047 1.3776194037 22.1907638249 16.7888119845
PWK/PhJ both 41.4301755386 1.363037727 44.1025624614 38.7577886157
WSB/EiJ both 40.5907090909 1.2912255812 43.1223003223 38.0591178595




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA