Project measure / variable:   CSNA03   pct_vert_time_light_LD_do

ID, description, units MPD:90201   pct_vert_time_light_LD_do   percentage of time vertical in light, 20 min test (LD box), DO   [%]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
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Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means46.928   % 44.132   %
Median of the strain means51.19   % 46.272   %
SD of the strain means± 10.855 ± 12.987
Coefficient of variation (CV)0.2313 0.2943
Min–max range of strain means25.556   –   56.94   % 20.113   –   59.98   %
Mean sample size per strain209.1   mice 198.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2283.2055 2283.2055 8.0972 0.0045
strain 8 156032.2569 19504.0321 69.1691 < 0.0001
sex:strain 8 12585.7871 1573.2234 5.5793 < 0.0001
Residuals 3649 1028930.2127 281.9759


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 56.94 41.233   38 6.6889 0.7242 0.92
129S1/SvImJ m 38.051 40.814   46 6.0177 1.0726 -0.47
A/J f 33.522 37.588   60 4.8526 1.1213 -1.24
A/J m 20.113 30.585   61 3.916 1.5207 -1.85
C57BL/6J f 53.12 16.601   60 2.1431 0.3125 16.322, 100.0 0.57
C57BL/6J m 54.77 13.518   59 1.7599 0.2468 26.046, 87.12 0.82
CAST/EiJ f 51.19 12.651   33 2.2023 0.2472 28.571, 81.36 0.39
CAST/EiJ m 51.67 13.6   30 2.483 0.2632 28.317, 89.31 0.58
J:DO f 54.16 14.983   1495 0.38752 0.2766 0.67
J:DO m 53.15 14.932   1402 0.39879 0.281 0.69
NOD/ShiLtJ f 56.46 14.616   47 2.132 0.2589 0.84388, 87.88 0.88
NOD/ShiLtJ m 59.98 9.8858   44 1.4903 0.1648 43.671, 85.46 1.22
NZO/HlLtJ f 25.556 15.116   47 2.2049 0.5915 2.1164, 61.61 -1.97
NZO/HlLtJ m 29.024 13.395   46 1.975 0.4615 0.06017, 52.35 -1.16
PWK/PhJ f 46.97 13.407   47 1.9556 0.2854 25.214, 85.62 0.0
PWK/PhJ m 44.16 8.7389   47 1.2747 0.1979 31.104, 64.46 0.0
WSB/EiJ f 44.434 14.293   55 1.9272 0.3217 21.417, 90.21 -0.23
WSB/EiJ m 46.272 14.999   50 2.1212 0.3242 20.085, 97.44 0.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 56.9382105263 2.7240447002 62.2790115521 51.5974095005
129S1/SvImJ m 38.0506917391 2.4758658656 42.9049097899 33.1964736884
A/J f 33.521529 2.1678558612 37.7718582278 29.2711997722
A/J m 20.1126872131 2.1500131227 24.3280337125 15.8973407138
C57BL/6J f 53.1191 2.1678558612 57.3694292278 48.8687707722
C57BL/6J m 54.7669830509 2.1861503278 59.0531806718 50.4807854299
CAST/EiJ f 51.1869090909 2.9231362469 56.9180518525 45.4557663293
CAST/EiJ m 51.6718333333 3.0658111602 57.6827065718 45.6609600948
J:DO f 54.1622603211 0.4342956024 55.0137464948 53.3107741473
J:DO m 53.1465715407 0.4484685799 54.0258454568 52.2672976245
NOD/ShiLtJ f 56.4587846809 2.4493852555 61.2610844683 51.6564848934
NOD/ShiLtJ m 59.9849090909 2.5315102485 64.9482243152 55.0215938666
NZO/HlLtJ f 25.5555680851 2.4493852555 30.3578678726 20.7532682977
NZO/HlLtJ m 29.0237602174 2.4758658656 33.8779782682 24.1695421666
PWK/PhJ f 46.9703617021 2.4493852555 51.7726614896 42.1680619147
PWK/PhJ m 44.1604893617 2.4493852555 48.9627891492 39.3581895742
WSB/EiJ f 44.4340181818 2.2642516006 48.8733422759 39.9946940877
WSB/EiJ m 46.2722 2.3747671132 50.9282023898 41.6161976102


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 47.4944511327 1.8405387332 51.1030377148 43.8858645506
A/J both 26.8171081066 1.5266102534 29.8102020181 23.824014195
C57BL/6J both 53.9430415254 1.5393872393 56.9611861786 50.9248968722
CAST/EiJ both 51.4293712121 2.1180134317 55.5819786594 47.2767637649
J:DO both 53.6544159309 0.3121444927 54.2664108908 53.042420971
NOD/ShiLtJ both 58.2218468859 1.7612518466 61.6749824633 54.7687113085
NZO/HlLtJ both 27.2896641512 1.7413644014 30.7038081191 23.8755201834
PWK/PhJ both 45.5654255319 1.7319769239 48.9611642769 42.1696867869
WSB/EiJ both 45.3531090909 1.6406061496 48.5697049882 42.1365131936




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA