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Project measure / variable:   CSNA03   jump_time_light_LD_in

ID, description, units MPD:90181   jump_time_light_LD_in   jump time in light, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - jump time in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means121.1   s 101.3   s
Median of the strain means144.4   s 115.6   s
SD of the strain means± 81.07 ± 72.95
Coefficient of variation (CV)0.6696 0.72
Min–max range of strain means8.641   –   246.3   s 5.8908   –   216.9   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 92134.0741 92134.0741 35.2147 < 0.0001
strain 9 4964737.5876 551637.5097 210.8419 < 0.0001
sex:strain 9 33486.7686 3720.7521 1.4221 0.174
Residuals 840 2197739.0485 2616.356


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 8.641 21.072   49 3.0103 2.4386 -1.39
129S1/SvImJ m 5.8908 10.291   49 1.4702 1.747 -1.31
A/J f 25.122 51.74   60 6.6802 2.0598 -1.18
A/J m 15.028 35.244   61 4.5125 2.3452 -1.18
C57BL/6J f 144.9 50.78   60 6.5556 0.3505 18.28, 244.7 0.29
C57BL/6J m 113.9 39.601   59 5.1556 0.3475 30.36, 223.2 0.17
C57BL/6NJ f 157.8 61.62   13 17.091 0.3904 27.08, 281.8 0.45
C57BL/6NJ m 142.4 46.257   13 12.829 0.3247 56.52, 194.3 0.56
CAST/EiJ f 193.2 53.67   33 9.3429 0.2779 42.08, 268.1 0.89
CAST/EiJ m 150.7 51.34   30 9.3733 0.3406 0.12, 234.5 0.68
DBA/2J f 85.91 26.276   24 5.3636 0.3059 41.92, 137.8 -0.43
DBA/2J m 59.95 35.218   24 7.1888 0.5875 14.16, 142.0 -0.57
NOD/ShiLtJ f 246.3 98.17   47 14.32 0.3985 2.36, 470.0 1.54
NOD/ShiLtJ m 216.9 74.32   44 11.204 0.3427 92.48, 361.2 1.58
NZO/HlLtJ f 24.855 29.692   47 4.3311 1.1946 0.08, 195.3 -1.19
NZO/HlLtJ m 19.23 14.151   46 2.0865 0.7359 0.24, 66.64 -1.13
PWK/PhJ f 143.8 64.13   47 9.3539 0.446 0.08, 301.6 0.28
PWK/PhJ m 117.2 45.906   48 6.6259 0.3918 0.22
WSB/EiJ f 180.2 55.35   55 7.4634 0.3072 13.0, 344.7 0.73
WSB/EiJ m 172.0 67.44   51 9.4436 0.3921 0.97


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 8.6410204082 7.3071896522 22.9835146872 -5.7014738709
129S1/SvImJ m 5.8908163265 7.3071896522 20.2333106056 -8.4516779525
A/J f 25.1218333333 6.6034788938 38.08308968 12.1605769866
A/J m 15.0280327869 6.549128349 27.8826103125 2.1734552613
C57BL/6J f 144.866 6.6034788938 157.8272563467 131.9047436533
C57BL/6J m 113.9447457627 6.6592054421 127.0153817393 100.8741097862
C57BL/6NJ f 157.8369230769 14.1865483688 185.6821684452 129.9916777086
C57BL/6NJ m 142.4415384615 14.1865483688 170.2867838298 114.5962930932
CAST/EiJ f 193.1503030303 8.904129124 210.6272575229 175.6733485377
CAST/EiJ m 150.7366666667 9.3387294105 169.0666511775 132.4066821558
DBA/2J f 85.9066666667 10.4410168926 106.4002123631 65.4131209702
DBA/2J m 59.95 10.4410168926 80.4435456964 39.4564543036
NOD/ShiLtJ f 246.3259574468 7.4610420955 260.9704320893 231.6814828043
NOD/ShiLtJ m 216.8654545455 7.7112020199 232.0009411168 201.7299679741
NZO/HlLtJ f 24.8553191489 7.4610420955 39.4997937914 10.2108445064
NZO/HlLtJ m 19.2297826087 7.5417043542 34.0325804972 4.4269847202
PWK/PhJ f 143.7944680851 7.4610420955 158.4389427276 129.1499934426
PWK/PhJ m 117.16875 7.3829138473 131.6598751325 102.6776248675
WSB/EiJ f 180.1534545455 6.8971087619 193.6910452839 166.615863807
WSB/EiJ m 171.9831372549 7.1624784982 186.0415936209 157.9246808889


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.2659183673 5.1669633545 17.4075933312 -2.8757565965
A/J both 20.0749330601 4.6501885885 29.2022865846 10.9475795356
C57BL/6J both 129.4053728814 4.6891084073 138.6091179196 120.2016278431
C57BL/6NJ both 150.1392307692 10.0314045532 169.828792593 130.4496689455
CAST/EiJ both 171.9434848485 6.4516544866 184.6067414449 159.2802282521
DBA/2J both 72.9283333333 7.3829138473 87.4194584658 58.4372082008
NOD/ShiLtJ both 231.5957059961 5.3649274399 242.1259433072 221.0654686851
NZO/HlLtJ both 22.0425508788 5.3043485396 32.4538844015 11.6312173561
PWK/PhJ both 130.4816090426 5.2482036457 140.7827418099 120.1804762752
WSB/EiJ both 176.0682959002 4.9717000993 185.8267096852 166.3098821152




  GWAS USING LINEAR MIXED MODELS