Project measure / variable:   CSNA03   stereotypic_time_light_LD_do

ID, description, units MPD:90171   stereotypic_time_light_LD_do   stereotypic time in light, 20 min test (LD box), DO   [s]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means50.19   s 55.5   s
Median of the strain means56.23   s 55.62   s
SD of the strain means± 13.83 ± 17.387
Coefficient of variation (CV)0.2756 0.3133
Min–max range of strain means30.603   –   66.73   s 33.894   –   82.05   s
Mean sample size per strain210.4   mice 199.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 146839.1687 146839.1687 254.7324 < 0.0001
strain 8 511821.685 63977.7106 110.9867 < 0.0001
sex:strain 8 28420.0762 3552.5095 6.1628 < 0.0001
Residuals 3667 2113823.1463 576.4448


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 30.603 33.838   49 4.834 1.1057 0.4, 135.5 -1.42
129S1/SvImJ m 37.209 39.227   49 5.6038 1.0542 -1.05
A/J f 42.362 41.449   60 5.351 0.9784 -0.57
A/J m 33.894 42.311   61 5.4173 1.2483 0.2, 146.8 -1.24
C57BL/6J f 65.34 33.929   60 4.3803 0.5193 14.24, 215.8 1.1
C57BL/6J m 70.64 19.631   59 2.5558 0.2779 35.2, 147.4 0.87
CAST/EiJ f 57.52 17.426   33 3.0335 0.303 24.08, 119.1 0.53
CAST/EiJ m 62.04 20.231   30 3.6937 0.3261 0.6, 102.5 0.38
J:DO f 66.73 22.04   1496 0.56982 0.3303 1.2
J:DO m 82.05 24.242   1403 0.64719 0.2955 0.08, 224.2 1.53
NOD/ShiLtJ f 59.6 19.829   47 2.8924 0.3327 4.64, 104.2 0.68
NOD/ShiLtJ m 72.4 15.461   44 2.3308 0.2136 43.28, 116.0 0.97
NZO/HlLtJ f 32.343 15.826   47 2.3085 0.4893 3.16, 87.68 -1.29
NZO/HlLtJ m 38.734 17.328   46 2.5549 0.4474 2.28, 77.44 -0.96
PWK/PhJ f 56.23 24.446   47 3.5658 0.4347 26.12, 146.8 0.44
PWK/PhJ m 55.62 15.683   48 2.2636 0.282 0.6, 99.4 0.01
WSB/EiJ f 40.973 12.369   55 1.6679 0.3019 24.8, 95.08 -0.67
WSB/EiJ m 46.932 16.483   51 2.3081 0.3512 20.68, 109.1 -0.49


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 30.6030612245 3.4298950351 37.3277515664 23.8783708825
129S1/SvImJ m 37.2087755102 3.4298950351 43.9334658522 30.4840851682
A/J f 42.362 3.0995828151 48.4390765307 36.2849234693
A/J m 33.8937704918 3.0740714116 39.9208290811 27.8667119025
C57BL/6J f 65.3423333333 3.0995828151 71.419409864 59.2652568027
C57BL/6J m 70.6393220339 3.1257400958 76.76768282 64.5109612478
CAST/EiJ f 57.5157575758 4.1794766152 65.7100858981 49.3214292535
CAST/EiJ m 62.0366666667 4.3834720547 70.6309507159 53.4423826174
J:DO f 66.7331149733 0.6207447752 67.9501540815 65.5160758651
J:DO m 82.0484746971 0.6409881991 83.3052032873 80.7917461068
NOD/ShiLtJ f 59.6021276596 3.5021112709 66.4684059565 52.7358493627
NOD/ShiLtJ m 72.3977272727 3.6195329233 79.4942237668 65.3012307787
NZO/HlLtJ f 32.3431914894 3.5021112709 39.2094697863 25.4769131925
NZO/HlLtJ m 38.7336956522 3.5399730337 45.6742061421 31.7931851623
PWK/PhJ f 56.2308510638 3.5021112709 63.0971293607 49.3645727669
PWK/PhJ m 55.618125 3.4654389382 62.4125031135 48.8237468865
WSB/EiJ f 40.9734545455 3.2374086653 47.3207539706 34.6261551203
WSB/EiJ m 46.9319607843 3.3619695956 53.5234757543 40.3404458143


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 33.9059183673 2.4253020381 38.6609925095 29.1508442252
A/J both 38.1278852459 2.18273502 42.4073797954 33.8483906964
C57BL/6J both 67.9908276836 2.2010034515 72.306139523 63.6755158442
CAST/EiJ both 59.7762121212 3.0283185116 65.7135670662 53.8388571762
J:DO both 74.3907948352 0.4461473824 75.2655163538 73.5160733166
NOD/ShiLtJ both 65.9999274661 2.5182236764 70.9371848055 61.0626701268
NZO/HlLtJ both 35.5384435708 2.4897887678 40.4199511123 30.6569360293
PWK/PhJ both 55.9244880319 2.4634351213 60.7543263211 51.0946497427
WSB/EiJ both 43.9527076649 2.3336481326 48.528084141 39.3773311888


GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA