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Project measure / variable:   JaxCC1   light_dur_LD

ID, description, units MPD:89089   light_dur_LD   time spent in light zone, 20 min test   [s]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 8-10wks
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  STRAIN COMPARISON PLOT
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JaxCC1 - time spent in light zone, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means376.1   s 372.0   s
Median of the strain means335.5   s 375.6   s
SD of the strain means± 99.18 ± 101.1
Coefficient of variation (CV)0.2637 0.2719
Min–max range of strain means285.9   –   672.1   s 223.1   –   559.1   s
Mean sample size per strain6.8   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 243.9923 243.9923 0.0076 0.9307
strain 16 1926472.9445 120404.559 3.7363 < 0.0001
sex:strain 16 610210.8774 38138.1798 1.1835 0.2831
Residuals 211 6799619.4952 32225.6848


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 323.6 129.4   8 45.744 0.3999 137.4, 503.8 -0.53
CC002/UncJ m 318.9 184.9   7 69.89 0.5798 143.9, 595.0 -0.52
CC003/UncJ f 297.5 131.7   5 58.89 0.4426 143.5, 497.5 -0.79
CC003/UncJ m 284.0 181.2   4 90.62 0.6381 112.2, 475.2 -0.87
CC004/TauUncJ f 463.3 75.35   5 33.698 0.1626 348.9, 550.6 0.88
CC004/TauUncJ m 531.1 114.2   8 40.369 0.215 327.5, 653.9 1.57
CC006/TauUncJ f 321.4 87.26   4 43.631 0.2715 241.4, 423.4 -0.55
CC006/TauUncJ m 308.9 107.3   8 37.928 0.3472 176.2, 476.2 -0.62
CC009/UncJ f 302.3 66.49   8 23.506 0.2199 231.9, 395.1 -0.74
CC009/UncJ m 223.1 106.4   8 37.601 0.4768 87.9, 434.4 -1.47
CC010/GeniUncJ f 424.4 465.3   5 208.1 1.0964 26.3, 1200.0 0.49
CC013/GeniUncJ f 445.1 102.9   8 36.384 0.2312 318.2, 598.8 0.7
CC013/GeniUncJ m 441.7 104.9   4 52.46 0.2376 328.3, 548.7 0.69
CC017/UncJ f 285.9 123.2   6 50.28 0.4307 144.5, 489.0 -0.91
CC017/UncJ m 270.0 222.7   5 99.61 0.8251 1.2, 600.1 -1.01
CC018/UncJ f 345.7 134.3   8 47.485 0.3885 77.1, 513.0 -0.31
CC018/UncJ m 441.4 74.93   8 26.491 0.1698 348.6, 539.2 0.69
CC019/TauUncJ f 422.4 149.1   8 52.73 0.3531 213.3, 621.3 0.47
CC019/TauUncJ m 375.6 134.1   8 47.406 0.3569 265.6, 648.5 0.04
CC024/GeniUncJ f 290.4 91.11   7 34.437 0.3137 182.9, 422.4 -0.86
CC024/GeniUncJ m 257.4 189.1   8 66.84 0.7346 16.1, 484.6 -1.13
CC025/GeniUncJ f 388.2 230.7   6 94.17 0.5942 178.3, 822.1 0.12
CC025/GeniUncJ m 559.1 354.0   10 112.0 0.6333 144.9, 1008.0 1.85
CC026/GeniUncJ f 288.6 126.5   8 44.729 0.4384 59.0, 458.8 -0.88
CC026/GeniUncJ m 323.2 117.0   8 41.36 0.362 141.0, 460.0 -0.48
CC032/GeniUncJ f 474.3 101.5   8 35.885 0.214 337.4, 637.2 0.99
CC032/GeniUncJ m 392.4 137.5   8 48.624 0.3505 146.7, 580.2 0.2
CC040/TauUncJ f 410.8 150.7   8 53.29 0.3669 200.4, 664.3 0.35
CC040/TauUncJ m 482.2 124.1   7 46.904 0.2573 323.2, 686.8 1.09
CC041/TauUncJ f 672.1 417.8   8 147.7 0.6216 299.2, 1200.0 2.98
CC041/TauUncJ m 394.6 282.0   8 99.7 0.7145 66.2, 837.1 0.22
CC051/TauUncJ f 288.1 178.6   8 63.13 0.6196 61.8, 568.8 -0.89
CC051/TauUncJ m 266.1 241.7   10 76.43 0.9084 23.3, 894.9 -1.05
CC068/TauUncJ f 325.3 78.84   5 35.257 0.2424 190.4, 389.7 -0.51
CC068/TauUncJ m 453.8 186.4   8 65.9 0.4107 280.3, 736.3 0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 323.55 63.4682 448.663 198.437
CC002/UncJ m 318.8857 67.8503 452.6371 185.1343
CC003/UncJ f 297.5 80.2816 455.7568 139.2432
CC003/UncJ m 284.025 89.7576 460.9615 107.0885
CC004/TauUncJ f 463.32 80.2816 621.5768 305.0632
CC004/TauUncJ m 531.1125 63.4682 656.2255 405.9995
CC006/TauUncJ f 321.425 89.7576 498.3615 144.4885
CC006/TauUncJ m 308.9375 63.4682 434.0505 183.8245
CC009/UncJ f 302.275 63.4682 427.388 177.162
CC009/UncJ m 223.0625 63.4682 348.1755 97.9495
CC013/GeniUncJ f 445.075 63.4682 570.188 319.962
CC013/GeniUncJ m 441.675 89.7576 618.6115 264.7385
CC017/UncJ f 285.9167 73.2867 430.3847 141.4487
CC017/UncJ m 269.96 80.2816 428.2168 111.7032
CC018/UncJ f 345.6875 63.4682 470.8005 220.5745
CC018/UncJ m 441.35 63.4682 566.463 316.237
CC019/TauUncJ f 422.35 63.4682 547.463 297.237
CC019/TauUncJ m 375.6375 63.4682 500.7505 250.5245
CC024/GeniUncJ f 290.4429 67.8503 424.1942 156.6915
CC024/GeniUncJ m 257.3625 63.4682 382.4755 132.2495
CC025/GeniUncJ f 388.1667 73.2867 532.6347 243.6987
CC025/GeniUncJ m 559.06 56.7677 670.9644 447.1556
CC026/GeniUncJ f 288.6 63.4682 413.713 163.487
CC026/GeniUncJ m 323.2 63.4682 448.313 198.087
CC032/GeniUncJ f 474.325 63.4682 599.438 349.212
CC032/GeniUncJ m 392.4125 63.4682 517.5255 267.2995
CC040/TauUncJ f 410.7875 63.4682 535.9005 285.6745
CC040/TauUncJ m 482.2143 67.8503 615.9657 348.4629
CC041/TauUncJ f 672.1 63.4682 797.213 546.987
CC041/TauUncJ m 394.6375 63.4682 519.7505 269.5245
CC051/TauUncJ f 288.15 63.4682 413.263 163.037
CC051/TauUncJ m 266.06 56.7677 377.9644 154.1556
CC068/TauUncJ f 325.3 80.2816 483.5568 167.0432
CC068/TauUncJ m 453.775 63.4682 578.888 328.662


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 321.2179 46.454 412.7912 229.6445
CC003/UncJ both 290.7625 60.2112 409.4551 172.0699
CC004/TauUncJ both 497.2162 51.1697 598.0856 396.3469
CC006/TauUncJ both 315.1812 54.9651 423.5323 206.8302
CC009/UncJ both 262.6687 44.8788 351.137 174.2005
CC013/GeniUncJ both 443.375 54.9651 551.726 335.024
CC017/UncJ both 277.9383 54.3509 385.0787 170.798
CC018/UncJ both 393.5187 44.8788 481.987 305.0505
CC019/TauUncJ both 398.9937 44.8788 487.462 310.5255
CC024/GeniUncJ both 273.9027 46.454 365.476 182.3294
CC025/GeniUncJ both 473.6133 46.3506 564.9829 382.2437
CC026/GeniUncJ both 305.9 44.8788 394.3682 217.4318
CC032/GeniUncJ both 433.3687 44.8788 521.837 344.9005
CC040/TauUncJ both 446.5009 46.454 538.0742 354.9276
CC041/TauUncJ both 533.3687 44.8788 621.837 444.9005
CC051/TauUncJ both 277.105 42.5758 361.0333 193.1767
CC068/TauUncJ both 389.5375 51.1697 490.4068 288.6682




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA