Project measure / variable:   JaxCC1   pip_12

ID, description, units MPD:89048   pip_12   auditory brainstem response (ABR) threshold, sound pressure level   [dB]  12 kHz pip  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 15-17wks
Procedure ABR test
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  STRAIN COMPARISON PLOT
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JaxCC1 - auditory brainstem response (ABR) threshold, sound pressure level 12 kHz pip



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means53.63   dB 57.18   dB
Median of the strain means48.75   dB 48.75   dB
SD of the strain means± 17.045 ± 18.816
Coefficient of variation (CV)0.3178 0.3291
Min–max range of strain means38.333   –   96.25   dB 35.0   –   93.75   dB
Mean sample size per strain3.2   mice 3.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 155.8734 155.8734 1.074 0.3033
strain 16 31177.2097 1948.5756 13.4264 < 0.0001
sex:strain 16 2731.5566 170.7223 1.1763 0.3058
Residuals 77 11175.0 145.1299


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 41.25 2.5   4 1.25 0.0606 40.0, 45.0 -0.73
CC002/UncJ m 48.333 10.408   3 6.0093 0.2153 40.0, 60.0 -0.47
CC003/UncJ f 42.5 6.455   4 3.2275 0.1519 35.0, 50.0 -0.65
CC003/UncJ m 61.67 20.207   3 11.667 0.3277 40.0, 80.0 0.24
CC004/TauUncJ f 51.25 2.5   4 1.25 0.0488 50.0, 55.0 -0.14
CC004/TauUncJ m 50.0 7.0711   4 3.5355 0.1414 45.0, 60.0 -0.38
CC006/TauUncJ f 60.0 21.213   2   15.0 0.3536 45.0, 75.0 0.37
CC006/TauUncJ m 77.5 30.687   4 15.343 0.396 35.0, 100.0 1.08
CC009/UncJ f 62.5 11.902   4 5.9512 0.1904 50.0, 75.0 0.52
CC009/UncJ m 78.75 26.575   4 13.288 0.3375 45.0, 100.0 1.15
CC010/GeniUncJ f 40.0 0.0   2   0.0 0.0 40.0, 40.0 -0.8
CC013/GeniUncJ f 86.67 7.6376   3 4.4096 0.0881 80.0, 95.0 1.94
CC013/GeniUncJ m 75.0 7.0711   2   5.0 0.0943 70.0, 80.0 0.95
CC017/UncJ f 38.333 2.8868   3 1.6667 0.0753 35.0, 40.0 -0.9
CC017/UncJ m 35.0 7.0711   2   5.0 0.202 30.0, 40.0 -1.18
CC018/UncJ f 56.67 12.583   3 7.2648 0.2221 45.0, 70.0 0.18
CC018/UncJ m 42.5 3.5355   2   2.5 0.0832 40.0, 45.0 -0.78
CC019/TauUncJ f 38.333 2.8868   3 1.6667 0.0753 35.0, 40.0 -0.9
CC019/TauUncJ m 40.0 5.7735   4 2.8868 0.1443 35.0, 45.0 -0.91
CC024/GeniUncJ f 43.333 2.8868   3 1.6667 0.0666 40.0, 45.0 -0.6
CC024/GeniUncJ m 43.75 11.087   4 5.5434 0.2534 30.0, 55.0 -0.71
CC025/GeniUncJ f 40.0 14.142   2   10.0 0.3536 30.0, 50.0 -0.8
CC025/GeniUncJ m 57.5 11.902   4 5.9512 0.207 40.0, 65.0 0.02
CC026/GeniUncJ f 43.333 2.8868   3 1.6667 0.0666 40.0, 45.0 -0.6
CC026/GeniUncJ m 48.75 6.2915   4 3.1458 0.1291 40.0, 55.0 -0.45
CC032/GeniUncJ f 96.25 4.7871   4 2.3936 0.0497 90.0, 100.0 2.5
CC032/GeniUncJ m 93.75 7.5   4 3.75 0.08 85.0, 100.0 1.94
CC040/TauUncJ f 76.25 18.428   4 9.2139 0.2417 55.0, 100.0 1.33
CC040/TauUncJ m 90.0 14.142   2   10.0 0.1571 80.0, 100.0 1.74
CC041/TauUncJ f 50.0 4.0825   4 2.0412 0.0816 45.0, 55.0 -0.21
CC041/TauUncJ m 48.75 2.5   4 1.25 0.0513 45.0, 50.0 -0.45
CC051/TauUncJ f 51.25 14.361   4 7.1807 0.2802 35.0, 70.0 -0.14
CC051/TauUncJ m 43.333 2.8868   3 1.6667 0.0666 40.0, 45.0 -0.74
CC068/TauUncJ f 47.5 3.5355   2   2.5 0.0744 45.0, 50.0 -0.36
CC068/TauUncJ m 37.5 3.5355   2   2.5 0.0943 35.0, 40.0 -1.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 41.25 6.0235 53.2443 29.2557
CC002/UncJ m 48.3333 6.9553 62.1832 34.4835
CC003/UncJ f 42.5 6.0235 54.4943 30.5057
CC003/UncJ m 61.6667 6.9553 75.5165 47.8168
CC004/TauUncJ f 51.25 6.0235 63.2443 39.2557
CC004/TauUncJ m 50.0 6.0235 61.9943 38.0057
CC006/TauUncJ f 60.0 8.5185 76.9625 43.0375
CC006/TauUncJ m 77.5 6.0235 89.4943 65.5057
CC009/UncJ f 62.5 6.0235 74.4943 50.5057
CC009/UncJ m 78.75 6.0235 90.7443 66.7557
CC013/GeniUncJ f 86.6667 6.9553 100.5165 72.8168
CC013/GeniUncJ m 75.0 8.5185 91.9625 58.0375
CC017/UncJ f 38.3333 6.9553 52.1832 24.4835
CC017/UncJ m 35.0 8.5185 51.9625 18.0375
CC018/UncJ f 56.6667 6.9553 70.5165 42.8168
CC018/UncJ m 42.5 8.5185 59.4625 25.5375
CC019/TauUncJ f 38.3333 6.9553 52.1832 24.4835
CC019/TauUncJ m 40.0 6.0235 51.9943 28.0057
CC024/GeniUncJ f 43.3333 6.9553 57.1832 29.4835
CC024/GeniUncJ m 43.75 6.0235 55.7443 31.7557
CC025/GeniUncJ f 40.0 8.5185 56.9625 23.0375
CC025/GeniUncJ m 57.5 6.0235 69.4943 45.5057
CC026/GeniUncJ f 43.3333 6.9553 57.1832 29.4835
CC026/GeniUncJ m 48.75 6.0235 60.7443 36.7557
CC032/GeniUncJ f 96.25 6.0235 108.2443 84.2557
CC032/GeniUncJ m 93.75 6.0235 105.7443 81.7557
CC040/TauUncJ f 76.25 6.0235 88.2443 64.2557
CC040/TauUncJ m 90.0 8.5185 106.9625 73.0375
CC041/TauUncJ f 50.0 6.0235 61.9943 38.0057
CC041/TauUncJ m 48.75 6.0235 60.7443 36.7557
CC051/TauUncJ f 51.25 6.0235 63.2443 39.2557
CC051/TauUncJ m 43.3333 6.9553 57.1832 29.4835
CC068/TauUncJ f 47.5 8.5185 64.4625 30.5375
CC068/TauUncJ m 37.5 8.5185 54.4625 20.5375


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 44.7917 4.6005 53.9525 35.6309
CC003/UncJ both 52.0833 4.6005 61.2441 42.9225
CC004/TauUncJ both 50.625 4.2593 59.1063 42.1437
CC006/TauUncJ both 68.75 5.2165 79.1374 58.3626
CC009/UncJ both 70.625 4.2593 79.1063 62.1437
CC013/GeniUncJ both 80.8333 5.4987 91.7826 69.8841
CC017/UncJ both 36.6667 5.4987 47.6159 25.7174
CC018/UncJ both 49.5833 5.4987 60.5326 38.6341
CC019/TauUncJ both 39.1667 4.6005 48.3275 30.0059
CC024/GeniUncJ both 43.5417 4.6005 52.7025 34.3809
CC025/GeniUncJ both 48.75 5.2165 59.1374 38.3626
CC026/GeniUncJ both 46.0417 4.6005 55.2025 36.8809
CC032/GeniUncJ both 95.0 4.2593 103.4813 86.5187
CC040/TauUncJ both 83.125 5.2165 93.5124 72.7376
CC041/TauUncJ both 49.375 4.2593 57.8563 40.8937
CC051/TauUncJ both 47.2917 4.6005 56.4525 38.1309
CC068/TauUncJ both 42.5 6.0235 54.4943 30.5057




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA