Project measure / variable:   Brinkmeyer1   TMEV_d28

ID, description, units MPD:64434   TMEV_d28   TMEV transcript abundance (normalized), post infection    day 28  
Theiler's murine encephalomyelitis virus study
Data set, strains Brinkmeyer1   CC   4 strains     sex: both     age: 4wks
Procedure RNA expression profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Brinkmeyer1 - TMEV transcript abundance (normalized), post infection day 28



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested4 strains4 strains
Mean of the strain means2.2172   None 0.4199   None
Median of the strain means0.45167   None 0.24482   None
SD of the strain means± 3.7233 ± 0.42161
Coefficient of variation (CV)1.6793 1.0041
Min–max range of strain means0.16757   –   7.7979   None 0.14307   –   1.0469   None
Mean sample size per strain1.5   mice 1.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0306 0.0306 1.7651 0.3153
Residuals 2 0.0347 0.0173


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC013/GeniUnc f 0.16757 0.0   1   0.0 0.0 0.167566294, 0.167566294 -0.55
CC013/GeniUnc m 0.14307 0.0   1   0.0 0.0 0.143073775, 0.143073775 -0.66
CC019/TauUnc f 0.51672 0.0   1   0.0 0.0 0.516722252, 0.516722252 -0.46
CC019/TauUnc m 0.27801 0.22574   2   0.15963 0.812 0.118380417, 0.437631261 -0.34
CC041/TauUnc f 7.7979 7.7211   2   5.4596 0.9902 2.338245843, 13.25751524 1.5
CC041/TauUnc m 1.0469 0.0   1   0.0 0.0 1.046892002, 1.046892002 1.49
CC061/GeniUnc f 0.38662 0.15935   2   0.11268 0.4122 0.273941754, 0.499300676 -0.49
CC061/GeniUnc m 0.21164 0.09643   2   0.06819 0.4556 0.143454216, 0.279826767 -0.49




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA