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Project measure / variable:   Brinkmeyer1   clin_score_d4

ID, description, units MPD:64419   clin_score_d4   clinical score (0=normal, 6=moribund), post infection   [score]  day 4  
Theiler's murine encephalomyelitis virus study
Data set, strains Brinkmeyer1   CC   5 strains     sex: both     age: 4wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Brinkmeyer1 - clinical score (0=normal, 6=moribund), post infection day 4



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested5 strains4 strains
Mean of the strain means0.94999   score 0.98335   score
Median of the strain means1.0   score 1.1334   score
SD of the strain means± 0.64978 ± 0.82621
Coefficient of variation (CV)0.684 0.8402
Min–max range of strain means0.0   –   1.5833   score 0.0   –   1.6667   score
Mean sample size per strain4.6   mice 4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.8001 1.8001 1.6988 0.2017
strain 3 16.4722 5.4907 5.1817 0.005
sex:strain 3 0.0631 0.021 0.0198 0.9961
Residuals 32 33.9083 1.0596


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC013/GeniUnc f 1.5 2.1213   2   1.5 1.4142 0.85
CC013/GeniUnc m 1.6667 0.8165   6 0.33333 0.4899 0.83
CC016/GeniUnc f 1.0 1.4142   2   1.0 1.4142 0.08
CC019/TauUnc f 1.5833 1.744   6 0.712 1.1015 0.97
CC019/TauUnc m 1.6667 1.0328   6 0.42164 0.6197 1.0, 3.0 0.83
CC041/TauUnc f 0.0 0.0   7 0.0 None -1.46
CC041/TauUnc m 0.0 0.0   2   0.0 None -1.19
CC061/GeniUnc f 0.66667 0.75277   6 0.30732 1.1292 -0.44
CC061/GeniUnc m 0.6 0.82158   5 0.36742 1.3693 -0.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC013/GeniUnc f 1.5 0.7278857797 2.982654815 0.017345185
CC013/GeniUnc m 1.6666666667 0.4202450509 2.5226778232 0.8106555101
CC019/TauUnc f 1.5833333333 0.4202450509 2.4393444899 0.7273221768
CC019/TauUnc m 1.6666666667 0.4202450509 2.5226778232 0.8106555101
CC041/TauUnc f 0.0 0.3890713149 0.7925123343 -0.7925123343
CC041/TauUnc m 0.0 0.7278857797 1.482654815 -1.482654815
CC061/GeniUnc f 0.6666666667 0.4202450509 1.5226778232 -0.1893444899
CC061/GeniUnc m 0.6 0.4603553881 1.5377132398 -0.3377132398


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC013/GeniUnc both 1.5833333333 0.4202450509 2.4393444899 0.7273221768
CC019/TauUnc both 1.625 0.2971581252 2.2302912936 1.0197087064
CC041/TauUnc both 0.0 0.4126724477 0.8405862687 -0.8405862687
CC061/GeniUnc both 0.6333333333 0.311662071 1.2681681977 -0.0015015311




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA