Project measure / variable:   Bolivar1   stereo_bouts_d3

ID, description, units MPD:63427   stereo_bouts_d3   number of stereotypic movement episodes, 5 min test in dark   [n]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of stereotypic movement episodes, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means39.492   n 42.117   n
Median of the strain means39.334   n 44.041   n
SD of the strain means± 3.107 ± 6.4672
Coefficient of variation (CV)0.0787 0.1536
Min–max range of strain means35.5   –   45.25   n 26.583   –   46.917   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 413.4375 413.4375 6.4185 0.012
strain 9 3685.3375 409.4819 6.3571 < 0.0001
sex:strain 9 1874.1042 208.2338 3.2328 0.001
Residuals 220 14170.9167 64.4133


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 35.667 10.307   12 2.9755 0.289 15.0, 50.0 -1.23
129S1/SvImJ m 26.583 10.841   12 3.1297 0.4078 10.0, 41.0 -2.4
A/J f 37.583 4.926   12 1.422 0.1311 31.0, 47.0 -0.61
A/J m 46.583 6.2879   12 1.8152 0.135 32.0, 54.0 0.69
B6129SF1/J f 37.333 10.79   12 3.1148 0.289 17.0, 50.0 -0.69
B6129SF1/J m 42.583 5.7912   12 1.6718 0.136 36.0, 56.0 0.07
B6C3F1/J f 45.25 4.0927   12 1.1815 0.0904 37.0, 53.0 1.85
B6C3F1/J m 45.25 6.4262   12 1.8551 0.142 31.0, 53.0 0.48
BALB/cByJ f 41.417 7.5131   12 2.1689 0.1814 24.0, 50.0 0.62
BALB/cByJ m 46.25 6.1515   12 1.7758 0.133 37.0, 56.0 0.64
C3H/HeJ f 35.5 9.5679   12 2.762 0.2695 19.0, 46.0 -1.28
C3H/HeJ m 42.833 5.5076   12 1.5899 0.1286 35.0, 55.0 0.11
C57BL/6J f 39.25 5.6749   12 1.6382 0.1446 31.0, 46.0 -0.08
C57BL/6J m 42.0 5.5268   12 1.5954 0.1316 33.0, 51.0 -0.02
CBA/J f 39.417 5.8069   12 1.6763 0.1473 27.0, 47.0 -0.02
CBA/J m 46.917 6.2444   12 1.8026 0.1331 33.0, 54.0 0.74
DBA/2J f 41.083 7.7981   12 2.2511 0.1898 28.0, 52.0 0.51
DBA/2J m 35.5 14.601   12 4.2149 0.4113 12.0, 58.0 -1.02
FVB/NJ f 42.417 9.2879   12 2.6812 0.219 22.0, 54.0 0.94
FVB/NJ m 46.667 8.9882   12 2.5947 0.1926 23.0, 55.0 0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 35.6667 2.3168 40.2327 31.1006
129S1/SvImJ m 26.5833 2.3168 31.1494 22.0173
A/J f 37.5833 2.3168 42.1494 33.0173
A/J m 46.5833 2.3168 51.1494 42.0173
B6129SF1/J f 37.3333 2.3168 41.8994 32.7673
B6129SF1/J m 42.5833 2.3168 47.1494 38.0173
B6C3F1/J f 45.25 2.3168 49.8161 40.6839
B6C3F1/J m 45.25 2.3168 49.8161 40.6839
BALB/cByJ f 41.4167 2.3168 45.9827 36.8506
BALB/cByJ m 46.25 2.3168 50.8161 41.6839
C3H/HeJ f 35.5 2.3168 40.0661 30.9339
C3H/HeJ m 42.8333 2.3168 47.3994 38.2673
C57BL/6J f 39.25 2.3168 43.8161 34.6839
C57BL/6J m 42.0 2.3168 46.5661 37.4339
CBA/J f 39.4167 2.3168 43.9827 34.8506
CBA/J m 46.9167 2.3168 51.4827 42.3506
DBA/2J f 41.0833 2.3168 45.6494 36.5173
DBA/2J m 35.5 2.3168 40.0661 30.9339
FVB/NJ f 42.4167 2.3168 46.9827 37.8506
FVB/NJ m 46.6667 2.3168 51.2327 42.1006


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 31.125 1.6383 34.3537 27.8963
A/J both 42.0833 1.6383 45.312 38.8546
B6129SF1/J both 39.9583 1.6383 43.187 36.7296
B6C3F1/J both 45.25 1.6383 48.4787 42.0213
BALB/cByJ both 43.8333 1.6383 47.062 40.6046
C3H/HeJ both 39.1667 1.6383 42.3954 35.938
C57BL/6J both 40.625 1.6383 43.8537 37.3963
CBA/J both 43.1667 1.6383 46.3954 39.938
DBA/2J both 38.2917 1.6383 41.5204 35.063
FVB/NJ both 44.5417 1.6383 47.7704 41.313




  GWAS USING LINEAR MIXED MODELS