Project measure / variable:   Bolivar1   rest_time_pct_d3

ID, description, units MPD:63412   rest_time_pct_d3   percentage of time spent resting, 5 min test in dark   [%]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent resting, 5 min test in dark day 3

129S1/SvImJB6129SF1/JDBA/2JC57BL/6JA/JCBA/JC3H/HeJB6C3F1/JFVB/NJBALB/cByJ % 30405060708090100femalemale


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means69.63   % 65.53   %
Median of the strain means70.64   % 63.27   %
SD of the strain means± 4.9279 ± 9.5103
Coefficient of variation (CV)0.0708 0.1451
Min–max range of strain means61.71   –   77.3   % 54.05   –   83.87   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1008.6 1008.6 9.5239 0.0023
strain 9 5410.5162 601.1685 5.6766 < 0.0001
sex:strain 9 6979.4109 775.4901 7.3227 < 0.0001
Residuals 220 23298.5348 105.9024


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S1/SvImJ f 70.4 13.536   12 3.9074 0.1923 51.2, 94.13333333 0.16
129S1/SvImJ m 83.87 8.9485   12 2.5832 0.1067 64.8, 98.76666667 1.93
A/J f 72.21 11.994   12 3.4623 0.1661 52.4, 89.13333333 0.52
A/J m 64.44 15.167   12 4.3782 0.2354 40.46666667, 88.7 -0.11
B6129SF1/J f 77.3 12.357   12 3.5671 0.1598 58.36666667, 94.5 1.56
B6129SF1/J m 65.06 11.721   12 3.3834 0.1802 43.33333333, 87.2 -0.05
B6C3F1/J f 64.9 7.4262   12 2.1438 0.1144 56.66666667, 76.36666667 -0.96
B6C3F1/J m 61.56 9.7438   12 2.8128 0.1583 39.3, 76.06666667 -0.42
BALB/cByJ f 64.28 12.46   12 3.5969 0.1938 47.4, 89.76666667 -1.09
BALB/cByJ m 54.05 13.917   12 4.0175 0.2575 31.56666667, 74.9 -1.21
C3H/HeJ f 73.44 4.1427   12 1.1959 0.0564 68.0, 81.0 0.77
C3H/HeJ m 61.39 5.2929   12 1.5279 0.0862 49.46666667, 69.3 -0.44
C57BL/6J f 67.38 9.9962   12 2.8857 0.1484 52.0, 80.43333333 -0.46
C57BL/6J m 70.38 6.1675   12 1.7804 0.0876 58.93333333, 81.3 0.51
CBA/J f 73.83 10.53   12 3.0397 0.1426 58.96666667, 96.73333333 0.85
CBA/J m 62.09 7.9439   12 2.2932 0.1279 47.56666667, 73.66666667 -0.36
DBA/2J f 61.71 8.376   12 2.4179 0.1357 49.66666667, 80.36666667 -1.61
DBA/2J m 77.97 12.81   12 3.6979 0.1643 48.96666667, 92.86666667 1.31
FVB/NJ f 70.87 7.1212   12 2.0557 0.1005 59.43333333, 83.0 0.25
FVB/NJ m 54.51 7.051   12 2.0354 0.1293 41.26666667, 64.9 -1.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 70.4 2.9707 76.2547 64.5453
129S1/SvImJ m 83.8694 2.9707 89.7242 78.0147
A/J f 72.2111 2.9707 78.0658 66.3564
A/J m 64.4389 2.9707 70.2936 58.5842
B6129SF1/J f 77.3028 2.9707 83.1575 71.4481
B6129SF1/J m 65.0583 2.9707 70.9131 59.2036
B6C3F1/J f 64.9 2.9707 70.7547 59.0453
B6C3F1/J m 61.5611 2.9707 67.4158 55.7064
BALB/cByJ f 64.2806 2.9707 70.1353 58.4258
BALB/cByJ m 54.0472 2.9707 59.9019 48.1925
C3H/HeJ f 73.4361 2.9707 79.2908 67.5814
C3H/HeJ m 61.3944 2.9707 67.2492 55.5397
C57BL/6J f 67.3806 2.9707 73.2353 61.5258
C57BL/6J m 70.3806 2.9707 76.2353 64.5258
CBA/J f 73.8278 2.9707 79.6825 67.9731
CBA/J m 62.0861 2.9707 67.9408 56.2314
DBA/2J f 61.7139 2.9707 67.5686 55.8592
DBA/2J m 77.9722 2.9707 83.8269 72.1175
FVB/NJ f 70.8694 2.9707 76.7242 65.0147
FVB/NJ m 54.5139 2.9707 60.3686 48.6592


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 77.1347 2.1006 81.2746 72.9948
A/J both 68.325 2.1006 72.4649 64.1851
B6129SF1/J both 71.1806 2.1006 75.3205 67.0406
B6C3F1/J both 63.2306 2.1006 67.3705 59.0906
BALB/cByJ both 59.1639 2.1006 63.3038 55.024
C3H/HeJ both 67.4153 2.1006 71.5552 63.2754
C57BL/6J both 68.8806 2.1006 73.0205 64.7406
CBA/J both 67.9569 2.1006 72.0969 63.817
DBA/2J both 69.8431 2.1006 73.983 65.7031
FVB/NJ both 62.6917 2.1006 66.8316 58.5518




  GWAS USING LINEAR MIXED MODELS

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