Project measure / variable:   Shorter3   weaned_tot

ID, description, units MPD:62303   weaned_tot   total number weaned   [n]  
Data set, strains Shorter3   CC diallel w/par   62 strains     sex: f     age: 3wks
Procedure colony observation
Ontology mappings

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  STRAIN COMPARISON PLOT
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Shorter3 - total number weaned



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 5.16 5.72 6.75 4.67 6.44 7.15 5.97 5.59
A ♀ 5.62 4.95 6.09 5.42 6.28 6.50 6.46 5.63
B6 ♀ 7.34 7.71 5.92 7.66 8.16 7.63 8.22 7.45
CAST ♀ 5.27 5.21 4.73 4.73 5.06 5.26 5.04 5.05
NOD ♀ 6.50 7.89 7.96 7.17 7.33 8.64 9.08 7.33
NZO ♀ 7.05 6.43 6.32 — 7.41 5.81 — 6.92
PWK ♀ 5.15 4.84 5.04 5.45 4.98 5.62 4.63 5.78
WSB ♀ 4.92 4.05 4.64 3.71 5.82 4.83 4.37 3.65

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ — — — — — — — —
A ♀ — — — — — — — —
B6 ♀ — — — — — — — —
CAST ♀ — — — — — — — —
NOD ♀ — — — — — — — —
NZO ♀ — — — — — — — —
PWK ♀ — — — — — — — —
WSB ♀ — — — — — — — —

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary Female
Number of strains tested62 strains
Mean of the strain means6.03   n
Median of the strain means5.79   n
SD of the strain means± 1.27
Coefficient of variation (CV)0.210
Min–max range of strain means3.65   –   9.08   n
Mean sample size per strain66.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 61 6657.9546 109.1468 21.912 < 0.0001
Residuals 4386 21847.3106 4.9811


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.16 2.24   343 0.121 0.435 1.0, 11.0 -0.69
129SAF1 f 5.72 2.52   29 0.468 0.44 1.0, 11.0 -0.25
129SB6F1 f 6.75 2.24   83 0.246 0.332 1.0, 11.0 0.56
129SCASTF1 f 4.67 2.43   33 0.423 0.521 1.0, 11.0 -1.08
129SNODF1 f 6.44 2.57   25 0.513 0.399 1.0, 10.0 0.32
129SNZOF1 f 7.15 1.96   27 0.376 0.274 4.0, 12.0 0.88
129SPWKF1 f 5.97 2.63   35 0.444 0.44 1.0, 12.0 -0.05
129SWSBF1 f 5.59 1.96   39 0.313 0.35 1.0, 8.0 -0.35
A129SF1 f 5.62 2.15   37 0.354 0.383 1.0, 9.0 -0.33
AB6F1 f 6.09 2.68   43 0.409 0.44 1.0, 10.0 0.04
ACASTF1 f 5.42 2.55   24 0.521 0.471 1.0, 10.0 -0.49
A/J f 4.95 1.79   198 0.127 0.362 1.0, 10.0 -0.86
ANODF1 f 6.28 2.19   25 0.438 0.349 2.0, 10.0 0.19
ANZOF1 f 6.5 2.04   18 0.48 0.313 1.0, 10.0 0.37
APWKF1 f 6.46 2.32   26 0.455 0.359 1.0, 10.0 0.34
AWSBF1 f 5.63 2.52   35 0.426 0.448 1.0, 10.0 -0.32
B6129SF1/J f 7.34 2.4   83 0.263 0.327 2.0, 12.0 1.03
B6AF1/J f 7.71 2.67   34 0.458 0.346 1.0, 12.0 1.32
B6CASTF1 f 7.66 2.74   41 0.429 0.358 1.0, 11.0 1.28
B6NODF1 f 8.16 2.61   31 0.469 0.32 1.0, 12.0 1.68
B6NZOF1 f 7.63 2.83   19 0.65 0.371 2.0, 13.0 1.26
B6PWKF1 f 8.22 2.25   63 0.284 0.274 2.0, 13.0 1.73
B6WSBF1 f 7.45 2.62   42 0.404 0.351 2.0, 12.0 1.12
C57BL/6J f 5.92 2.49   438 0.119 0.421 1.0, 13.0 -0.09
CAST129SF1 f 5.27 1.1   33 0.191 0.208 2.0, 7.0 -0.6
CASTAF1 f 5.21 1.25   34 0.214 0.24 3.0, 7.0 -0.65
CASTB6F1 f 4.73 1.54   92 0.161 0.326 1.0, 8.0 -1.03
CAST/EiJ f 4.73 1.75   252 0.11 0.37 1.0, 11.0 -1.03
CASTNODF1 f 5.06 1.17   33 0.204 0.231 3.0, 8.0 -0.77
CASTNZOF1 f 5.26 1.16   27 0.224 0.221 3.0, 8.0 -0.61
CASTPWKF1 f 5.04 1.14   76 0.13 0.226 2.0, 7.0 -0.79
CASTWSBF1 f 5.05 1.11   43 0.17 0.22 2.0, 7.0 -0.78
NOD129SF1 f 6.5 4.06   30 0.741 0.624 1.0, 16.0 0.37
NODAF1 f 7.89 3.91   28 0.739 0.495 1.0, 15.0 1.47
NODB6F1 f 7.96 2.96   52 0.41 0.371 1.0, 13.0 1.52
NODCASTF1 f 7.17 3.46   36 0.577 0.483 1.0, 15.0 0.9
NODNZOF1 f 8.64 4.1   22 0.874 0.475 1.0, 16.0 2.06
NODPWKF1 f 9.08 2.61   37 0.429 0.287 2.0, 13.0 2.4
NOD/ShiLtJ f 7.33 2.94   213 0.202 0.401 1.0, 16.0 1.02
NODWSBF1 f 7.33 3.69   36 0.615 0.503 1.0, 14.0 1.02
NZO129SF1 f 7.05 2.22   21 0.485 0.316 2.0, 11.0 0.8
NZOAF1 f 6.43 3.09   21 0.675 0.481 1.0, 11.0 0.31
NZOB6F1 f 6.32 2.93   22 0.626 0.464 1.0, 13.0 0.23
NZO/HlLtJ f 5.81 2.41   142 0.202 0.415 1.0, 11.0 -0.18
NZONODF1 f 7.41 1.9   29 0.353 0.256 3.0, 11.0 1.09
NZOWSBF1 f 6.92 2.59   24 0.528 0.374 1.0, 10.0 0.7
PWK129SF1 f 5.15 2.13   39 0.342 0.414 1.0, 9.0 -0.7
PWKAF1 f 4.84 2.04   49 0.292 0.423 1.0, 9.0 -0.94
PWKB6F1 f 5.04 2.22   56 0.297 0.442 1.0, 9.0 -0.79
PWKCASTF1 f 5.45 2.25   58 0.295 0.413 2.0, 10.0 -0.46
PWKNODF1 f 4.98 2.2   51 0.307 0.441 1.0, 8.0 -0.83
PWKNZOF1 f 5.62 1.92   26 0.377 0.342 2.0, 10.0 -0.33
PWK/PhJ f 4.63 1.95   364 0.102 0.421 1.0, 10.0 -1.11
PWKWSBF1 f 5.78 1.85   40 0.292 0.32 2.0, 10.0 -0.2
WSB129SF1 f 4.92 1.96   37 0.323 0.399 1.0, 9.0 -0.88
WSBAF1 f 4.05 1.9   44 0.287 0.471 1.0, 9.0 -1.57
WSBB6F1 f 4.64 1.79   47 0.261 0.385 1.0, 8.0 -1.1
WSBCASTF1 f 3.71 1.61   66 0.199 0.435 1.0, 8.0 -1.84
WSB/EiJ f 3.65 1.62   341 0.0875 0.443 1.0, 9.0 -1.88
WSBNODF1 f 5.82 1.79   39 0.287 0.308 2.0, 9.0 -0.17
WSBNZOF1 f 4.83 1.49   30 0.272 0.308 2.0, 7.0 -0.95
WSBPWKF1 f 4.37 1.83   87 0.196 0.419 1.0, 8.0 -1.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.1574 0.1205 5.3937 4.9212
129SAF1 f 5.7241 0.4144 6.5367 4.9116
129SB6F1 f 6.747 0.245 7.2273 6.2667
129SCASTF1 f 4.6667 0.3885 5.4284 3.905
129SNODF1 f 6.44 0.4464 7.3151 5.5649
129SNZOF1 f 7.1481 0.4295 7.9902 6.3061
129SPWKF1 f 5.9714 0.3773 6.711 5.2318
129SWSBF1 f 5.5897 0.3574 6.2904 4.8891
A129SF1 f 5.6216 0.3669 6.341 4.9023
AB6F1 f 6.093 0.3404 6.7603 5.4258
ACASTF1 f 5.4167 0.4556 6.3098 4.5235
A/J f 4.9545 0.1586 5.2655 4.6436
ANODF1 f 6.28 0.4464 7.1551 5.4049
ANZOF1 f 6.5 0.5261 7.5313 5.4687
APWKF1 f 6.4615 0.4377 7.3197 5.6034
AWSBF1 f 5.6286 0.3773 6.3682 4.889
B6129SF1/J f 7.3373 0.245 7.8176 6.8571
B6AF1/J f 7.7059 0.3828 8.4563 6.9555
B6CASTF1 f 7.6585 0.3486 8.3419 6.9752
B6NODF1 f 8.1613 0.4009 8.9472 7.3754
B6NZOF1 f 7.6316 0.512 8.6354 6.6278
B6PWKF1 f 8.2222 0.2812 8.7735 7.671
B6WSBF1 f 7.4524 0.3444 8.1275 6.7772
C57BL/6J f 5.9155 0.1066 6.1246 5.7065
CAST129SF1 f 5.2727 0.3885 6.0344 4.511
CASTAF1 f 5.2059 0.3828 5.9563 4.4555
CASTB6F1 f 4.7283 0.2327 5.1844 4.2721
CAST/EiJ f 4.7302 0.1406 5.0058 4.4545
CASTNODF1 f 5.0606 0.3885 5.8223 4.2989
CASTNZOF1 f 5.2593 0.4295 6.1013 4.4172
CASTPWKF1 f 5.0395 0.256 5.5414 4.5376
CASTWSBF1 f 5.0465 0.3404 5.7138 4.3792
NOD129SF1 f 6.5 0.4075 7.2989 5.7011
NODAF1 f 7.8929 0.4218 8.7198 7.066
NODB6F1 f 7.9615 0.3095 8.5683 7.3548
NODCASTF1 f 7.1667 0.372 7.8959 6.4374
NODNZOF1 f 8.6364 0.4758 9.5692 7.7035
NODPWKF1 f 9.0811 0.3669 9.8004 8.3617
NOD/ShiLtJ f 7.3333 0.1529 7.6331 7.0335
NODWSBF1 f 7.3333 0.372 8.0626 6.6041
NZO129SF1 f 7.0476 0.487 8.0024 6.0928
NZOAF1 f 6.4286 0.487 7.3834 5.4737
NZOB6F1 f 6.3182 0.4758 7.2511 5.3853
NZO/HlLtJ f 5.8099 0.1873 6.177 5.4427
NZONODF1 f 7.4138 0.4144 8.2263 6.6013
NZOWSBF1 f 6.9167 0.4556 7.8098 6.0235
PWK129SF1 f 5.1538 0.3574 5.8545 4.4532
PWKAF1 f 4.8367 0.3188 5.4618 4.2117
PWKB6F1 f 5.0357 0.2982 5.6204 4.451
PWKCASTF1 f 5.4483 0.2931 6.0228 4.8737
PWKNODF1 f 4.9804 0.3125 5.5931 4.3677
PWKNZOF1 f 5.6154 0.4377 6.4735 4.7573
PWK/PhJ f 4.6319 0.117 4.8612 4.4025
PWKWSBF1 f 5.775 0.3529 6.4668 5.0832
WSB129SF1 f 4.9189 0.3669 5.6383 4.1996
WSBAF1 f 4.0455 0.3365 4.7051 3.3858
WSBB6F1 f 4.6383 0.3255 5.2765 4.0001
WSBCASTF1 f 3.7121 0.2747 4.2507 3.1735
WSB/EiJ f 3.6481 0.1209 3.885 3.4111
WSBNODF1 f 5.8205 0.3574 6.5212 5.1199
WSBNZOF1 f 4.8333 0.4075 5.6322 4.0345
WSBPWKF1 f 4.3678 0.2393 4.8369 3.8987




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA