Project measure / variable:   Palmer6   distance_d1

ID, description, units MPD:59822   distance_d1   total distance traveled on day 1, saline   [cm]  
Data set, strains Palmer6   F1 Cacna1c   30 strains     sex: both     age: 7-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Palmer6 - total distance traveled on day 1, saline

SMB6F1RIIIB6F1C58B6F1SEAB6F1AKB6F1MAB6F1NODB6F1BTBRB6F1CBAB6F1CByB6F1LGB6F1NONB6F1BUB6F1FVBB6F1C57BL/6JSWRB6F1IB6F1PLB6F1C3B6F1KKB6F1MRLB6F1AB6F1DDYB6F1SJLB6F1D2B6F1LPB6F1NZBB6F1NZWB6F1129SB6F1BKSB6F1 cm 2,0004,0006,0008,00010,00012,00014,000femalemale


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means5684   cm 5688   cm
Median of the strain means5459   cm 5796   cm
SD of the strain means± 1279 ± 1374
Coefficient of variation (CV)0.225 0.242
Min–max range of strain means3553   –   8386   cm 3427   –   8755   cm
Mean sample size per strain5.8   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 53186.8132 53186.8132 0.0265 0.8708
strain 29 467390916.1306 16116928.1424 8.027 < 0.0001
sex:strain 29 129458954.5039 4464101.8794 2.2233 0.0005
Residuals 304 610381766.4533 2007834.7581


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 60 (60)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129SB6F1 f 4021.0 1044.0   6 426.0 0.26 2729.0, 5245.0 -1.3
129SB6F1 m 4276.0 1076.0   5 481.0 0.252 2603.0, 5211.0 -1.03
AB6F1 f 4880.0 1446.0   6 590.0 0.296 3236.0, 6802.0 -0.63
AB6F1 m 4735.0 971.0   7 367.0 0.205 3440.0, 6123.0 -0.69
AKB6F1 f 8218.0 1716.0   6 701.0 0.209 6477.0, 10835.0 1.98
AKB6F1 m 6136.0 1513.0   5 677.0 0.247 4390.0, 8274.0 0.33
BKSB6F1 f 3553.0 884.0   6 361.0 0.249 2111.0, 4416.0 -1.67
BKSB6F1 m 3427.0 287.0   6 117.0 0.0838 3195.0, 3984.0 -1.65
BTBRB6F1 f 6794.0 1975.0   5 883.0 0.291 4445.0, 8876.0 0.87
BTBRB6F1 m 6167.0 1586.0   6 648.0 0.257 3546.0, 7950.0 0.35
BUB6F1 f 5233.0 908.0   4 454.0 0.174 4576.0, 6538.0 -0.35
BUB6F1 m 6576.0 4161.0   5 1861.0 0.633 2858.0, 13721.0 0.65
C3B6F1 f 5715.0 1301.0   5 582.0 0.228 4341.0, 7709.0 0.02
C3B6F1 m 4401.0 956.0   5 428.0 0.217 3256.0, 5774.0 -0.94
C57BL/6J f 5428.0 1317.0   17 319.0 0.243 3511.0, 7713.0 -0.2
C57BL/6J m 5747.0 1372.0   16 343.0 0.239 3605.0, 7985.0 0.04
C58B6F1 f 6405.0 1360.0   5 608.0 0.212 4304.0, 7629.0 0.56
C58B6F1 m 8755.0 1789.0   5 800.0 0.204 6794.0, 11245.0 2.23
CBAB6F1 f 5636.0 1443.0   6 589.0 0.256 4345.0, 8251.0 -0.04
CBAB6F1 m 7300.0 949.0   8 336.0 0.13 5650.0, 8898.0 1.17
CByB6F1 f 5200.0 1676.0   6 684.0 0.322 2464.0, 7400.0 -0.38
CByB6F1 m 6759.0 1005.0   6 410.0 0.149 5719.0, 8440.0 0.78
D2B6F1 f 4862.0 784.0   6 320.0 0.161 4059.0, 6284.0 -0.64
D2B6F1 m 4568.0 697.0   5 312.0 0.153 3927.0, 5694.0 -0.82
DDYB6F1 f 5589.0 1285.0   6 525.0 0.23 3957.0, 7125.0 -0.07
DDYB6F1 m 3897.0 1237.0   7 467.0 0.317 2132.0, 5137.0 -1.3
FVBB6F1 f 6930.0 2269.0   5 1015.0 0.327 3554.0, 9117.0 0.97
FVBB6F1 m 4619.0 1531.0   6 625.0 0.331 2613.0, 6554.0 -0.78
IB6F1 f 4831.0 1279.0   4 639.0 0.265 3130.0, 6000.0 -0.67
IB6F1 m 5954.0 1155.0   6 472.0 0.194 4402.0, 7416.0 0.19
KKB6F1 f 4337.0 1198.0   6 489.0 0.276 2750.0, 6244.0 -1.05
KKB6F1 m 5629.0 1015.0   5 454.0 0.18 4762.0, 7131.0 -0.04
LGB6F1 f 6035.0 1007.0   6 411.0 0.167 4849.0, 7314.0 0.27
LGB6F1 m 5900.0 1038.0   7 392.0 0.176 4892.0, 7660.0 0.15
LPB6F1 f 3854.0 1248.0   6 510.0 0.324 1547.0, 5177.0 -1.43
LPB6F1 m 5300.0 1413.0   5 632.0 0.267 3946.0, 7457.0 -0.28
MAB6F1 f 6987.0 2308.0   6 942.0 0.33 4053.0, 11093.0 1.02
MAB6F1 m 6402.0 428.0   6 175.0 0.0668 5819.0, 6911.0 0.52
MRLB6F1 f 5127.0 1058.0   6 432.0 0.206 3973.0, 7067.0 -0.44
MRLB6F1 m 4671.0 873.0   6 356.0 0.187 3369.0, 5616.0 -0.74
NODB6F1 f 5623.0 1687.0   7 637.0 0.3 4050.0, 8863.0 -0.05
NODB6F1 m 7636.0 1372.0   6 560.0 0.18 5890.0, 9398.0 1.42
NONB6F1 f 5470.0 2129.0   5 952.0 0.389 2973.0, 8722.0 -0.17
NONB6F1 m 6456.0 2256.0   4 1128.0 0.35 3878.0, 8989.0 0.56
NZBB6F1 f 4384.0 1061.0   6 433.0 0.242 2819.0, 5425.0 -1.02
NZBB6F1 m 4510.0 760.0   6 310.0 0.169 3338.0, 5391.0 -0.86
NZWB6F1 f 4664.0 1633.0   6 667.0 0.35 2750.0, 6881.0 -0.8
NZWB6F1 m 4185.0 1633.0   5 730.0 0.39 2401.0, 6030.0 -1.09
PLB6F1 f 5448.0 1198.0   5 536.0 0.22 3939.0, 7030.0 -0.18
PLB6F1 m 4802.0 886.0   5 396.0 0.185 3981.0, 6128.0 -0.64
RIIIB6F1 f 8386.0 2081.0   6 849.0 0.248 6010.0, 10656.0 2.11
RIIIB6F1 m 7262.0 1485.0   6 606.0 0.204 5639.0, 9914.0 1.15
SEAB6F1 f 7608.0 1618.0   6 660.0 0.213 5787.0, 9272.0 1.5
SEAB6F1 m 6869.0 1872.0   5 837.0 0.273 4986.0, 9622.0 0.86
SJLB6F1 f 5820.0 1362.0   6 556.0 0.234 3849.0, 7754.0 0.11
SJLB6F1 m 3643.0 312.0   6 127.0 0.0855 3264.0, 4023.0 -1.49
SMB6F1 f 8235.0 1448.0   6 591.0 0.176 5516.0, 9513.0 1.99
SMB6F1 m 8214.0 795.0   6 325.0 0.0968 7226.0, 9494.0 1.84
SWRB6F1 f 5262.0 952.0   6 389.0 0.181 4147.0, 6799.0 -0.33
SWRB6F1 m 5844.0 745.0   6 304.0 0.127 4851.0, 6643.0 0.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 f 4020.6667 578.48 5158.9986 2882.3348
129SB6F1 m 4276.0 633.6931 5522.9801 3029.0199
AB6F1 f 4879.8333 578.48 6018.1652 3741.5014
AB6F1 m 4735.0 535.5684 5788.8905 3681.1095
AKB6F1 f 8218.1667 578.48 9356.4986 7079.8348
AKB6F1 m 6136.4 633.6931 7383.3801 4889.4199
BKSB6F1 f 3552.6667 578.48 4690.9986 2414.3348
BKSB6F1 m 3427.0 578.48 4565.3319 2288.6681
BTBRB6F1 f 6794.2 633.6931 8041.1801 5547.2199
BTBRB6F1 m 6167.0 578.48 7305.3319 5028.6681
BUB6F1 f 5233.0 708.4904 6627.1662 3838.8338
BUB6F1 m 6576.0 633.6931 7822.9801 5329.0199
C3B6F1 f 5715.2 633.6931 6962.1801 4468.2199
C3B6F1 m 4401.2 633.6931 5648.1801 3154.2199
C57BL/6J f 5427.8235 343.6683 6104.0934 4751.5536
C57BL/6J m 5746.8125 354.2452 6443.8956 5049.7294
C58B6F1 f 6405.0 633.6931 7651.9801 5158.0199
C58B6F1 m 8754.8 633.6931 10001.7801 7507.8199
CBAB6F1 f 5635.5 578.48 6773.8319 4497.1681
CBAB6F1 m 7300.25 500.9784 8286.0743 6314.4257
CByB6F1 f 5200.0 578.48 6338.3319 4061.6681
CByB6F1 m 6759.3333 578.48 7897.6652 5621.0014
D2B6F1 f 4862.1667 578.48 6000.4986 3723.8348
D2B6F1 m 4567.8 633.6931 5814.7801 3320.8199
DDYB6F1 f 5589.0 578.48 6727.3319 4450.6681
DDYB6F1 m 3896.8571 535.5684 4950.7477 2842.9666
FVBB6F1 f 6929.6 633.6931 8176.5801 5682.6199
FVBB6F1 m 4619.3333 578.48 5757.6652 3481.0014
IB6F1 f 4830.75 708.4904 6224.9162 3436.5838
IB6F1 m 5954.5 578.48 7092.8319 4816.1681
KKB6F1 f 4337.1667 578.48 5475.4986 3198.8348
KKB6F1 m 5628.6 633.6931 6875.5801 4381.6199
LGB6F1 f 6035.1667 578.48 7173.4986 4896.8348
LGB6F1 m 5899.8571 535.5684 6953.7477 4845.9666
LPB6F1 f 3853.8333 578.48 4992.1652 2715.5014
LPB6F1 m 5299.8 633.6931 6546.7801 4052.8199
MAB6F1 f 6987.1667 578.48 8125.4986 5848.8348
MAB6F1 m 6402.1667 578.48 7540.4986 5263.8348
MRLB6F1 f 5127.0 578.48 6265.3319 3988.6681
MRLB6F1 m 4671.3333 578.48 5809.6652 3533.0014
NODB6F1 f 5622.5714 535.5684 6676.462 4568.6809
NODB6F1 m 7636.0 578.48 8774.3319 6497.6681
NONB6F1 f 5469.6 633.6931 6716.5801 4222.6199
NONB6F1 m 6455.5 708.4904 7849.6662 5061.3338
NZBB6F1 f 4383.8333 578.48 5522.1652 3245.5014
NZBB6F1 m 4510.0 578.48 5648.3319 3371.6681
NZWB6F1 f 4663.8333 578.48 5802.1652 3525.5014
NZWB6F1 m 4185.0 633.6931 5431.9801 2938.0199
PLB6F1 f 5448.2 633.6931 6695.1801 4201.2199
PLB6F1 m 4802.0 633.6931 6048.9801 3555.0199
RIIIB6F1 f 8385.8333 578.48 9524.1652 7247.5014
RIIIB6F1 m 7262.5 578.48 8400.8319 6124.1681
SEAB6F1 f 7608.5 578.48 8746.8319 6470.1681
SEAB6F1 m 6869.2 633.6931 8116.1801 5622.2199
SJLB6F1 f 5819.8333 578.48 6958.1652 4681.5014
SJLB6F1 m 3642.6667 578.48 4780.9986 2504.3348
SMB6F1 f 8235.3333 578.48 9373.6652 7097.0014
SMB6F1 m 8214.5 578.48 9352.8319 7076.1681
SWRB6F1 f 5262.1667 578.48 6400.4986 4123.8348
SWRB6F1 m 5844.0 578.48 6982.3319 4705.6681


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SB6F1 both 4148.3333 429.0123 4992.5429 3304.1238
AB6F1 both 4807.4167 394.1677 5583.0591 4031.7742
AKB6F1 both 7177.2833 429.0123 8021.4929 6333.0738
BKSB6F1 both 3489.8333 409.0471 4294.7555 2684.9111
BTBRB6F1 both 6480.6 429.0123 7324.8095 5636.3905
BUB6F1 both 5904.5 475.2698 6839.7351 4969.2649
C3B6F1 both 5058.2 448.0887 5939.9481 4176.4519
C57BL/6J both 5587.318 246.778 6072.9274 5101.7087
C58B6F1 both 7579.9 448.0887 8461.6481 6698.1519
CBAB6F1 both 6467.875 382.6286 7220.8108 5714.9392
CByB6F1 both 5979.6667 409.0471 6784.5889 5174.7445
D2B6F1 both 4714.9833 429.0123 5559.1929 3870.7738
DDYB6F1 both 4742.9286 394.1677 5518.571 3967.2861
FVBB6F1 both 5774.4667 429.0123 6618.6762 4930.2571
IB6F1 both 5392.625 457.3286 6292.5554 4492.6946
KKB6F1 both 4982.8833 429.0123 5827.0929 4138.6738
LGB6F1 both 5967.5119 394.1677 6743.1543 5191.8695
LPB6F1 both 4576.8167 429.0123 5421.0262 3732.6071
MAB6F1 both 6694.6667 409.0471 7499.5889 5889.7445
MRLB6F1 both 4899.1667 409.0471 5704.0889 4094.2445
NODB6F1 both 6629.2857 394.1677 7404.9282 5853.6433
NONB6F1 both 5962.55 475.2698 6897.7851 5027.3149
NZBB6F1 both 4446.9167 409.0471 5251.8389 3641.9945
NZWB6F1 both 4424.4167 429.0123 5268.6262 3580.2071
PLB6F1 both 5125.1 448.0887 6006.8481 4243.3519
RIIIB6F1 both 7824.1667 409.0471 8629.0889 7019.2445
SEAB6F1 both 7238.85 429.0123 8083.0595 6394.6405
SJLB6F1 both 4731.25 409.0471 5536.1722 3926.3278
SMB6F1 both 8224.9167 409.0471 9029.8389 7419.9945
SWRB6F1 both 5553.0833 409.0471 6358.0055 4748.1611




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA