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Project measure / variable:   Palmer4   center_d1

ID, description, units MPD:59321   center_d1   duration in center of arena on day 1   [s]  
Data set, strains Palmer4   F1 Cacna1c   30 strains     sex: both     age: 7-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Palmer4 - duration in center of arena on day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means78.0   s 92.1   s
Median of the strain means73.4   s 89.5   s
SD of the strain means± 46.5 ± 45.7
Coefficient of variation (CV)0.596 0.496
Min–max range of strain means14.0   –   170   s 14.2   –   163   s
Mean sample size per strain5.5   mice 5.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13538.594 13538.594 4.5071 0.0346
strain 29 705096.4844 24313.6719 8.0942 < 0.0001
sex:strain 29 57746.3971 1991.2551 0.6629 0.9086
Residuals 286 859095.2095 3003.8294


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(129S x B6-Cacna1c)F1 f 17.7 23.8   7 9.01 1.35 3.0, 67.0 -1.3
(129S x B6-Cacna1c)F1 m 14.2 21.4   5 9.58 1.51 1.0, 52.0 -1.7
(AJ x B6-Cacna1c)F1 f 14.0 17.7   6 7.21 1.26 1.0, 46.0 -1.38
(AJ x B6-Cacna1c)F1 m 18.0 33.5   6 13.7 1.86 -1.62
(AKR x B6-Cacna1c)F1 f 61.0 50.2   5 22.5 0.824 16.0, 141.0 -0.37
(AKR x B6-Cacna1c)F1 m 45.0 23.0   5 10.3 0.511 27.0, 85.0 -1.03
(B6 x B6-Cacna1c)F1 f 160.0 93.2   14 24.9 0.581 34.0, 330.0 1.77
(B6 x B6-Cacna1c)F1 m 143.0 68.9   15 17.8 0.481 15.0, 225.0 1.11
(BALB x B6-Cacna1c)F1 f 110.0 60.7   5 27.1 0.553 38.0, 184.0 0.69
(BALB x B6-Cacna1c)F1 m 51.0 39.6   6 16.2 0.776 4.0, 95.0 -0.9
(BLKS x B6-Cacna1c)F1 f 34.2 11.3   5 5.05 0.33 19.0, 49.0 -0.94
(BLKS x B6-Cacna1c)F1 m 41.4 12.8   5 5.74 0.31 25.0, 58.0 -1.11
(BTBR x B6-Cacna1c)F1 f 20.7 14.7   6 6.01 0.712 6.0, 46.0 -1.23
(BTBR x B6-Cacna1c)F1 m 76.6 32.3   5 14.4 0.421 44.0, 125.0 -0.34
(BUB x B6-Cacna1c)F1 f 119.0 86.7   5 38.8 0.728 5.0, 243.0 0.88
(BUB x B6-Cacna1c)F1 m 93.8 73.2   5 32.7 0.78 15.0, 181.0 0.04
(C3H x B6-Cacna1c)F1 f 48.3 41.3   6 16.9 0.855 9.0, 125.0 -0.64
(C3H x B6-Cacna1c)F1 m 61.6 32.4   5 14.5 0.525 27.0, 109.0 -0.67
(C58 x B6-Cacna1c)F1 f 130.0 64.5   6 26.3 0.497 69.0, 220.0 1.12
(C58 x B6-Cacna1c)F1 m 134.0 77.2   6 31.5 0.576 48.0, 272.0 0.92
(CBA x B6-Cacna1c)F1 f 150.0 80.9   5 36.2 0.54 40.0, 232.0 1.55
(CBA x B6-Cacna1c)F1 m 162.0 99.2   4 49.6 0.613 19.0, 249.0 1.53
(DBA x B6-Cacna1c)F1 f 30.5 11.6   4 5.81 0.381 20.0, 47.0 -1.02
(DBA x B6-Cacna1c)F1 m 68.0 55.0   6 22.5 0.809 21.0, 164.0 -0.53
(DDY x B6-Cacna1c)F1 f 25.8 18.3   6 7.45 0.707 3.0, 49.0 -1.12
(DDY x B6-Cacna1c)F1 m 60.8 42.1   5 18.8 0.693 18.0, 119.0 -0.69
(FVB x B6-Cacna1c)F1 f 170.0 61.8   6 25.2 0.363 100.0, 266.0 1.98
(FVB x B6-Cacna1c)F1 m 160.0 49.4   6 20.2 0.309 106.0, 239.0 1.48
(ILN x B6-Cacna1c)F1 f 20.2 13.6   5 6.08 0.673 3.0, 33.0 -1.24
(ILN x B6-Cacna1c)F1 m 53.7 30.0   6 12.3 0.56 16.0, 98.0 -0.84
(KK x B6-Cacna1c)F1 f 65.8 36.3   6 14.8 0.551 7.0, 103.0 -0.26
(KK x B6-Cacna1c)F1 m 63.0 32.3   6 13.2 0.513 23.0, 113.0 -0.64
(LG x B6-Cacna1c)F1 f 40.2 29.6   6 12.1 0.736 16.0, 86.0 -0.81
(LG x B6-Cacna1c)F1 m 35.7 38.3   6 15.6 1.07 4.0, 100.0 -1.23
(LP x B6-Cacna1c)F1 f 54.2 21.6   4 10.8 0.398 27.0, 79.0 -0.51
(LP x B6-Cacna1c)F1 m 89.6 86.7   5 38.8 0.967 5.0, 221.0 -0.06
(MA x B6-Cacna1c)F1 f 68.0 26.4   6 10.8 0.389 28.0, 93.0 -0.22
(MA x B6-Cacna1c)F1 m 90.3 34.6   6 14.1 0.383 31.0, 122.0 -0.04
(MRL x B6-Cacna1c)F1 f 49.8 62.1   6 25.3 1.25 3.0, 167.0 -0.61
(MRL x B6-Cacna1c)F1 m 89.5 59.1   6 24.1 0.661 11.0, 171.0 -0.06
(NOD x B6-Cacna1c)F1 f 82.0 72.9   6 29.8 0.89 17.0, 220.0 0.09
(NOD x B6-Cacna1c)F1 m 104.0 54.7   6 22.3 0.526 72.0, 214.0 0.26
(NON x B6-Cacna1c)F1 f 84.4 50.4   5 22.5 0.597 31.0, 148.0 0.14
(NON x B6-Cacna1c)F1 m 98.2 34.4   6 14.0 0.35 58.0, 134.0 0.13
(NZB x B6-Cacna1c)F1 f 78.8 67.3   6 27.5 0.853 9.0, 205.0 0.02
(NZB x B6-Cacna1c)F1 m 96.0 72.6   5 32.5 0.757 27.0, 214.0 0.08
(NZW x B6-Cacna1c)F1 f 42.2 54.1   5 24.2 1.28 8.0, 138.0 -0.77
(NZW x B6-Cacna1c)F1 m 69.2 59.6   5 26.7 0.862 31.0, 171.0 -0.5
(PL x B6-Cacna1c)F1 f 110.0 32.0   5 14.3 0.292 57.0, 141.0 0.69
(PL x B6-Cacna1c)F1 m 160.0 73.9   6 30.2 0.463 77.0, 245.0 1.48
(RIII x B6-Cacna1c)F1 f 138.0 54.3   6 22.2 0.393 95.0, 243.0 1.29
(RIII x B6-Cacna1c)F1 m 154.0 73.1   6 29.9 0.475 83.0, 291.0 1.35
(SEA x B6-Cacna1c)F1 f 145.0 56.2   6 22.9 0.387 91.0, 227.0 1.44
(SEA x B6-Cacna1c)F1 m 163.0 62.3   6 25.4 0.382 83.0, 241.0 1.55
(SJL x B6-Cacna1c)F1 f 84.2 72.7   4 36.3 0.863 9.0, 148.0 0.13
(SJL x B6-Cacna1c)F1 m 74.7 40.3   6 16.5 0.54 12.0, 122.0 -0.38
(SM x B6-Cacna1c)F1 f 78.8 16.9   4 8.43 0.214 57.0, 96.0 0.02
(SM x B6-Cacna1c)F1 m 146.0 32.0   6 13.1 0.22 86.0, 171.0 1.18
(SWR x B6-Cacna1c)F1 f 107.0 58.9   6 24.0 0.551 32.0, 171.0 0.62
(SWR x B6-Cacna1c)F1 m 148.0 74.0   3 42.7 0.499 63.0, 194.0 1.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Cacna1c)F1 f 17.7143 20.7152 58.4878 0.0
(129S x B6-Cacna1c)F1 m 14.2 24.5105 62.4439 0.0
(AJ x B6-Cacna1c)F1 f 14.0 22.3749 58.0405 0.0
(AJ x B6-Cacna1c)F1 m 18.0 22.3749 62.0405 0.0
(AKR x B6-Cacna1c)F1 f 61.0 24.5105 109.2439 12.7561
(AKR x B6-Cacna1c)F1 m 45.0 24.5105 93.2439 0.0
(B6 x B6-Cacna1c)F1 f 160.3571 14.6478 189.1884 131.5259
(B6 x B6-Cacna1c)F1 m 143.2667 14.1512 171.1203 115.413
(BALB x B6-Cacna1c)F1 f 109.6 24.5105 157.8439 61.3561
(BALB x B6-Cacna1c)F1 m 51.0 22.3749 95.0405 6.9595
(BLKS x B6-Cacna1c)F1 f 34.2 24.5105 82.4439 0.0
(BLKS x B6-Cacna1c)F1 m 41.4 24.5105 89.6439 0.0
(BTBR x B6-Cacna1c)F1 f 20.6667 22.3749 64.7071 0.0
(BTBR x B6-Cacna1c)F1 m 76.6 24.5105 124.8439 28.3561
(BUB x B6-Cacna1c)F1 f 119.0 24.5105 167.2439 70.7561
(BUB x B6-Cacna1c)F1 m 93.8 24.5105 142.0439 45.5561
(C3H x B6-Cacna1c)F1 f 48.3333 22.3749 92.3738 4.2929
(C3H x B6-Cacna1c)F1 m 61.6 24.5105 109.8439 13.3561
(C58 x B6-Cacna1c)F1 f 129.6667 22.3749 173.7071 85.6262
(C58 x B6-Cacna1c)F1 m 134.0 22.3749 178.0405 89.9595
(CBA x B6-Cacna1c)F1 f 149.8 24.5105 198.0439 101.5561
(CBA x B6-Cacna1c)F1 m 161.75 27.4036 215.6883 107.8117
(DBA x B6-Cacna1c)F1 f 30.5 27.4036 84.4383 0.0
(DBA x B6-Cacna1c)F1 m 68.0 22.3749 112.0405 23.9595
(DDY x B6-Cacna1c)F1 f 25.8333 22.3749 69.8738 0.0
(DDY x B6-Cacna1c)F1 m 60.8 24.5105 109.0439 12.5561
(FVB x B6-Cacna1c)F1 f 170.3333 22.3749 214.3738 126.2929
(FVB x B6-Cacna1c)F1 m 159.8333 22.3749 203.8738 115.7929
(ILN x B6-Cacna1c)F1 f 20.2 24.5105 68.4439 0.0
(ILN x B6-Cacna1c)F1 m 53.6667 22.3749 97.7071 9.6262
(KK x B6-Cacna1c)F1 f 65.8333 22.3749 109.8738 21.7929
(KK x B6-Cacna1c)F1 m 63.0 22.3749 107.0405 18.9595
(LG x B6-Cacna1c)F1 f 40.1667 22.3749 84.2071 0.0
(LG x B6-Cacna1c)F1 m 35.6667 22.3749 79.7071 0.0
(LP x B6-Cacna1c)F1 f 54.25 27.4036 108.1883 0.3117
(LP x B6-Cacna1c)F1 m 89.6 24.5105 137.8439 41.3561
(MA x B6-Cacna1c)F1 f 68.0 22.3749 112.0405 23.9595
(MA x B6-Cacna1c)F1 m 90.3333 22.3749 134.3738 46.2929
(MRL x B6-Cacna1c)F1 f 49.8333 22.3749 93.8738 5.7929
(MRL x B6-Cacna1c)F1 m 89.5 22.3749 133.5405 45.4595
(NOD x B6-Cacna1c)F1 f 82.0 22.3749 126.0405 37.9595
(NOD x B6-Cacna1c)F1 m 104.0 22.3749 148.0405 59.9595
(NON x B6-Cacna1c)F1 f 84.4 24.5105 132.6439 36.1561
(NON x B6-Cacna1c)F1 m 98.1667 22.3749 142.2071 54.1262
(NZB x B6-Cacna1c)F1 f 78.8333 22.3749 122.8738 34.7929
(NZB x B6-Cacna1c)F1 m 96.0 24.5105 144.2439 47.7561
(NZW x B6-Cacna1c)F1 f 42.2 24.5105 90.4439 0.0
(NZW x B6-Cacna1c)F1 m 69.2 24.5105 117.4439 20.9561
(PL x B6-Cacna1c)F1 f 109.6 24.5105 157.8439 61.3561
(PL x B6-Cacna1c)F1 m 159.6667 22.3749 203.7071 115.6262
(RIII x B6-Cacna1c)F1 f 138.3333 22.3749 182.3738 94.2929
(RIII x B6-Cacna1c)F1 m 154.0 22.3749 198.0405 109.9595
(SEA x B6-Cacna1c)F1 f 145.3333 22.3749 189.3738 101.2929
(SEA x B6-Cacna1c)F1 m 163.0 22.3749 207.0405 118.9595
(SJL x B6-Cacna1c)F1 f 84.25 27.4036 138.1883 30.3117
(SJL x B6-Cacna1c)F1 m 74.6667 22.3749 118.7071 30.6262
(SM x B6-Cacna1c)F1 f 78.75 27.4036 132.6883 24.8117
(SM x B6-Cacna1c)F1 m 145.6667 22.3749 189.7071 101.6262
(SWR x B6-Cacna1c)F1 f 106.8333 22.3749 150.8738 62.7929
(SWR x B6-Cacna1c)F1 m 148.3333 31.643 210.6159 86.0507


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(129S x B6-Cacna1c)F1 both 15.9571 16.0459 47.5402 0.0
(AJ x B6-Cacna1c)F1 both 16.0 15.8215 47.1413 0.0
(AKR x B6-Cacna1c)F1 both 53.0 17.3316 87.1136 18.8864
(B6 x B6-Cacna1c)F1 both 151.8119 10.1835 171.856 131.7678
(BALB x B6-Cacna1c)F1 both 80.3 16.5937 112.9613 47.6387
(BLKS x B6-Cacna1c)F1 both 37.8 17.3316 71.9136 3.6864
(BTBR x B6-Cacna1c)F1 both 48.6333 16.5937 81.2946 15.9721
(BUB x B6-Cacna1c)F1 both 106.4 17.3316 140.5136 72.2864
(C3H x B6-Cacna1c)F1 both 54.9667 16.5937 87.6279 22.3054
(C58 x B6-Cacna1c)F1 both 131.8333 15.8215 162.9746 100.692
(CBA x B6-Cacna1c)F1 both 155.775 18.3829 191.9579 119.5921
(DBA x B6-Cacna1c)F1 both 49.25 17.6889 84.067 14.433
(DDY x B6-Cacna1c)F1 both 43.3167 16.5937 75.9779 10.6554
(FVB x B6-Cacna1c)F1 both 165.0833 15.8215 196.2246 133.942
(ILN x B6-Cacna1c)F1 both 36.9333 16.5937 69.5946 4.2721
(KK x B6-Cacna1c)F1 both 64.4167 15.8215 95.558 33.2754
(LG x B6-Cacna1c)F1 both 37.9167 15.8215 69.058 6.7754
(LP x B6-Cacna1c)F1 both 71.925 18.3829 108.1079 35.7421
(MA x B6-Cacna1c)F1 both 79.1667 15.8215 110.308 48.0254
(MRL x B6-Cacna1c)F1 both 69.6667 15.8215 100.808 38.5254
(NOD x B6-Cacna1c)F1 both 93.0 15.8215 124.1413 61.8587
(NON x B6-Cacna1c)F1 both 91.2833 16.5937 123.9446 58.6221
(NZB x B6-Cacna1c)F1 both 87.4167 16.5937 120.0779 54.7554
(NZW x B6-Cacna1c)F1 both 55.7 17.3316 89.8136 21.5864
(PL x B6-Cacna1c)F1 both 134.6333 16.5937 167.2946 101.9721
(RIII x B6-Cacna1c)F1 both 146.1667 15.8215 177.308 115.0254
(SEA x B6-Cacna1c)F1 both 154.1667 15.8215 185.308 123.0254
(SJL x B6-Cacna1c)F1 both 79.4583 17.6889 114.2754 44.6413
(SM x B6-Cacna1c)F1 both 112.2083 17.6889 147.0254 77.3913
(SWR x B6-Cacna1c)F1 both 127.5833 19.3773 165.7235 89.4432




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA