Project measure / variable:   GMC14   lens_mean_density_R

ID, description, units MPD:56336   lens_mean_density_R   mean density value of lens, Scheimpflug imaging   [%]  right eye  
Data set, strains GMC14   inbred w/CC8   8 strains     sex: both     age: 15-16wks
Procedure Scheimpflug imaging
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  STRAIN COMPARISON PLOT
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GMC14 - mean density value of lens, Scheimpflug imaging right eye



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means6.27   % 6.27   %
Median of the strain means5.56   % 5.63   %
SD of the strain means± 1.50 ± 1.52
Coefficient of variation (CV)0.239 0.243
Min–max range of strain means4.92   –   9.22   % 4.89   –   9.17   %
Mean sample size per strain13.8   mice 12.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0833 0.0833 0.0725 0.788
strain 7 468.6331 66.9476 58.3277 < 0.0001
sex:strain 7 5.114 0.7306 0.6365 0.7253
Residuals 195 223.818 1.1478


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 7.34 0.65   16 0.163 0.0885 6.3, 8.5 0.72
129S1/SvImJ m 6.99 1.15   16 0.286 0.164 4.7, 8.5 0.47
A/J f 9.22 2.62   16 0.654 0.284 5.6, 17.2 1.97
A/J m 9.17 1.65   14 0.44 0.179 7.6, 13.7 1.9
C57BL/6J f 5.17 0.326   16 0.0814 0.0629 4.7, 5.8 -0.73
C57BL/6J m 5.28 0.432   16 0.108 0.0819 4.5, 5.8 -0.65
CAST/EiJ f 5.28 0.86   19 0.197 0.163 4.1, 8.1 -0.66
CAST/EiJ m 4.95 0.834   16 0.209 0.169 3.9, 7.6 -0.87
NOD/ShiLtJ f 7.08 0.652   18 0.154 0.092 6.2, 8.5 0.54
NOD/ShiLtJ m 7.61 1.1   16 0.276 0.145 6.1, 9.7 0.88
NZO/HlLtJ f 4.92 0.251   17 0.0608 0.051 4.3, 5.3 -0.9
NZO/HlLtJ m 4.89 0.299   17 0.0725 0.0611 4.3, 5.5 -0.91
PWK/PhJ f 5.3 0.258   4 0.129 0.0487 5.0, 5.6 -0.65
PWK/PhJ m 5.85 0.0707   2   0.05 0.0121 5.8, 5.9 -0.28
WSB/EiJ f 5.83 0.918   4 0.459 0.158 5.3, 7.2 -0.29
WSB/EiJ m 5.42 0.585   4 0.293 0.108 5.1, 6.3 -0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 7.3438 0.2678 7.872 6.8155
129S1/SvImJ m 6.9875 0.2678 7.5157 6.4593
A/J f 9.2188 0.2678 9.747 8.6905
A/J m 9.1714 0.2863 9.7361 8.6067
C57BL/6J f 5.175 0.2678 5.7032 4.6468
C57BL/6J m 5.2812 0.2678 5.8095 4.753
CAST/EiJ f 5.2842 0.2458 5.7689 4.7995
CAST/EiJ m 4.95 0.2678 5.4782 4.4218
NOD/ShiLtJ f 7.0833 0.2525 7.5814 6.5853
NOD/ShiLtJ m 7.6063 0.2678 8.1345 7.078
NZO/HlLtJ f 4.9176 0.2598 5.4301 4.4052
NZO/HlLtJ m 4.8941 0.2598 5.4066 4.3817
PWK/PhJ f 5.3 0.5357 6.3565 4.2435
PWK/PhJ m 5.85 0.7576 7.3441 4.3559
WSB/EiJ f 5.825 0.5357 6.8815 4.7685
WSB/EiJ m 5.425 0.5357 6.4815 4.3685


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.1656 0.1894 7.5391 6.7921
A/J both 9.1951 0.196 9.5817 8.8085
C57BL/6J both 5.2281 0.1894 5.6016 4.8546
CAST/EiJ both 5.1171 0.1818 5.4756 4.7586
NOD/ShiLtJ both 7.3448 0.1841 7.7078 6.9818
NZO/HlLtJ both 4.9059 0.1837 5.2682 4.5435
PWK/PhJ both 5.575 0.4639 6.4899 4.6601
WSB/EiJ both 5.625 0.3788 6.372 4.878




  GWAS USING LINEAR MIXED MODELS