Project measure / variable:   GMC03   pelvic_elev

ID, description, units MPD:55214   pelvic_elev   pelvic elevation (0=less than 5, 1=5 or more, 2=no data)   [score]  
Data set, strains GMC03   inbred w/CC8   8 strains     sex: both     age: 8-10wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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GMC03 - pelvic elevation (0=less than 5, 1=5 or more, 2=no data)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.565   score 0.649   score
Median of the strain means0.633   score 0.909   score
SD of the strain means± 0.434 ± 0.453
Coefficient of variation (CV)0.768 0.698
Min–max range of strain means0   –   1.00   score 0   –   1.00   score
Mean sample size per strain17.5   mice 17.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.3968 0.3968 5.4809 0.02
strain 7 45.0472 6.4353 88.8916 < 0.0001
sex:strain 7 1.0231 0.1462 2.0189 0.0531
Residuals 260 18.8227 0.0724


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.25 0.447   16 0.112 1.79 -0.73
129S1/SvImJ m 0.375 0.5   16 0.125 1.33 -0.6
A/J f 0.0 0.0   16 0.0 0.0 -1.3
A/J m 0.0 0.0   16 0.0 0.0 -1.43
C57BL/6J f 1.0 0.0   16 0.0 0.0 1.0, 1.0 1.0
C57BL/6J m 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.77
CAST/EiJ f 1.0 0.0   19 0.0 0.0 1.0, 1.0 1.0
CAST/EiJ m 1.0 0.0   17 0.0 0.0 1.0, 1.0 0.77
NOD/ShiLtJ f 1.0 0.0   18 0.0 0.0 1.0, 1.0 1.0
NOD/ShiLtJ m 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.77
NZO/HlLtJ f 0.0 0.0   17 0.0 0.0 -1.3
NZO/HlLtJ m 0.0 0.0   17 0.0 0.0 -1.43
PWK/PhJ f 0.6 0.503   20 0.112 0.838 0.08
PWK/PhJ m 0.818 0.395   22 0.0842 0.482 0.37
WSB/EiJ f 0.667 0.485   18 0.114 0.728 0.24
WSB/EiJ m 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.25 0.0673 0.3825 0.1175
129S1/SvImJ m 0.375 0.0673 0.5075 0.2425
A/J f 0.0 0.0673 0.1325 -0.1325
A/J m 0.0 0.0673 0.1325 -0.1325
C57BL/6J f 1.0 0.0673 1.1325 0.8675
C57BL/6J m 1.0 0.0673 1.1325 0.8675
CAST/EiJ f 1.0 0.0617 1.1215 0.8785
CAST/EiJ m 1.0 0.0653 1.1285 0.8715
NOD/ShiLtJ f 1.0 0.0634 1.1249 0.8751
NOD/ShiLtJ m 1.0 0.0673 1.1325 0.8675
NZO/HlLtJ f 0.0 0.0653 0.1285 -0.1285
NZO/HlLtJ m 0.0 0.0653 0.1285 -0.1285
PWK/PhJ f 0.6 0.0602 0.7185 0.4815
PWK/PhJ m 0.8182 0.0574 0.9311 0.7052
WSB/EiJ f 0.6667 0.0634 0.7915 0.5418
WSB/EiJ m 1.0 0.0673 1.1325 0.8675


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.3125 0.0476 0.4062 0.2188
A/J both 0.0 0.0476 0.0937 -0.0937
C57BL/6J both 1.0 0.0476 1.0937 0.9063
CAST/EiJ both 1.0 0.0449 1.0884 0.9116
NOD/ShiLtJ both 1.0 0.0462 1.091 0.909
NZO/HlLtJ both 0.0 0.0461 0.0909 -0.0909
PWK/PhJ both 0.7091 0.0416 0.7909 0.6272
WSB/EiJ both 0.8333 0.0462 0.9244 0.7423




  GWAS USING LINEAR MIXED MODELS