Project measure / variable:   Odet1   seminif_germ_abnormal

ID, description, units MPD:53727   seminif_germ_abnormal   number of seminiferous tubules with abnormal germ cells, transverse section   [n]  
Data set, strains Odet1   inbred w/CC8   8 strains     sex: m     age: 10-66wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Odet1 - number of seminiferous tubules with abnormal germ cells, transverse section



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means7.40   n
Median of the strain means4.60   n
SD of the strain means± 6.29
Coefficient of variation (CV)0.850
Min–max range of strain means1.53   –   15.9   n
Mean sample size per strain25.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 6862.4845 980.3549 3.6223 0.0011
Residuals 199 53857.699 270.6417


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.62 4.18   32 0.739 2.57 -0.92
A/J m 15.3 24.2   26 4.74 1.58 1.26
C57BL/6J m 5.69 3.17   36 0.528 0.557 1.0, 14.0 -0.27
CAST/EiJ m 1.53 1.71   19 0.393 1.12 -0.93
NOD/ShiLtJ m 13.1 36.7   26 7.21 2.8 1.0, 180.0 0.91
NZO/HlLtJ m 15.9 13.5   22 2.89 0.852 1.0, 48.0 1.35
PWK/PhJ m 3.5 4.0   16 1.0 1.14 -0.62
WSB/EiJ m 2.53 3.9   30 0.712 1.54 -0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.625 2.9082 7.3598 0.0
A/J m 15.3462 3.2263 21.7084 8.9839
C57BL/6J m 5.6944 2.7419 11.1013 0.2876
CAST/EiJ m 1.5263 3.7742 8.9688 0.0
NOD/ShiLtJ m 13.1154 3.2263 19.4776 6.7532
NZO/HlLtJ m 15.9091 3.5074 22.8255 8.9926
PWK/PhJ m 3.5 4.1128 11.6103 0.0
WSB/EiJ m 2.5333 3.0036 8.4562 0.0




  GWAS USING LINEAR MIXED MODELS