Project measure / variable:   Shimomura2   LL_amplitude

ID, description, units MPD:52732   LL_amplitude   amplitude of circadian rhythm in constant light   [%]  
Data set, strains Shimomura2   inbred w/CC7   38 strains     sex: both     age: 10wks
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  STRAIN COMPARISON PLOT
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Shimomura2 - amplitude of circadian rhythm in constant light



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested38 strains37 strains
Mean of the strain means6.39   % 5.83   %
Median of the strain means5.20   % 5.46   %
SD of the strain means± 3.72 ± 2.97
Coefficient of variation (CV)0.582 0.509
Min–max range of strain means0.133   –   16.1   % 1.73   –   13.3   %
Mean sample size per strain8.6   mice 8.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.8825 4.8825 0.3117 0.5769
strain 36 5185.6854 144.0468 9.1948 < 0.0001
sex:strain 36 870.5637 24.1823 1.5436 0.0243
Residuals 559 8757.3661 15.6661


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.92 3.34   20 0.746 0.852 0.5, 13.4 -0.66
129S1/SvImJ m 2.84 2.15   18 0.506 0.756 0.4, 7.8 -1.01
A/J f 3.54 3.7   11 1.12 1.05 0.3, 12.1 -0.77
A/J m 4.84 4.0   12 1.16 0.827 0.2, 10.5 -0.33
AKR/J f 4.56 2.87   8 1.01 0.628 0.7, 10.2 -0.49
AKR/J m 5.46 4.06   5 1.82 0.744 0.6, 10.9 -0.12
BALB/cByJ f 3.58 2.01   12 0.58 0.56 0.3, 8.1 -0.75
BALB/cByJ m 6.81 2.55   8 0.902 0.375 2.3, 11.3 0.33
BTBR T+ Itpr3tf/J f 2.71 3.37   9 1.12 1.24 0.3, 10.5 -0.99
BTBR T+ Itpr3tf/J m 2.49 3.74   9 1.25 1.5 0.1, 9.7 -1.13
BUB/BnJ f 2.54 1.57   5 0.702 0.618 0.7, 4.0 -1.03
BUB/BnJ m 2.0 1.28   5 0.571 0.638 0.5, 4.0 -1.29
C3H/HeJ f 8.22 6.17   13 1.71 0.751 0.5, 18.5 0.49
C3H/HeJ m 11.2 4.43   11 1.34 0.396 2.5, 16.0 1.81
C57BL/10J f 6.34 3.08   8 1.09 0.487 3.8, 12.3 -0.01
C57BL/10J m 5.06 3.49   8 1.23 0.689 2.6, 13.6 -0.26
C57BL/6J f 12.1 3.92   15 1.01 0.325 3.1, 17.2 1.54
C57BL/6J m 9.58 3.96   11 1.19 0.413 5.7, 17.4 1.26
C57BLKS/J f 5.88 3.14   11 0.946 0.533 1.5, 11.0 -0.14
C57BLKS/J m 5.61 2.29   8 0.811 0.409 1.5, 8.3 -0.07
C57BR/cdJ f 8.7 5.62   11 1.69 0.646 0.6, 16.0 0.62
C57BR/cdJ m 5.58 2.85   8 1.01 0.511 2.6, 11.5 -0.08
C57L/J f 11.1 5.94   7 2.25 0.535 2.7, 20.9 1.27
C57L/J m 10.2 5.18   21 1.13 0.508 1.6, 21.1 1.47
C58/J f 5.18 3.11   11 0.936 0.599 1.3, 11.2 -0.32
C58/J m 9.69 5.17   13 1.43 0.533 0.9, 18.9 1.3
CAST/EiJ f 13.7 5.21   15 1.34 0.379 4.1, 21.0 1.97
CAST/EiJ m 13.3 6.45   9 2.15 0.486 4.0, 21.9 2.52
CBA/J f 8.94 7.79   7 2.95 0.872 0.4, 20.0 0.69
CBA/J m 8.94 6.42   7 2.43 0.718 4.0, 19.7 1.05
CZECHII/EiJ f 8.49 6.85   8 2.42 0.807 1.7, 17.7 0.57
CZECHII/EiJ m 5.6 0.7   3 0.404 0.125 4.8, 6.1 -0.08
DBA/1J f 11.2 4.88   8 1.72 0.434 4.8, 17.6 1.3
DBA/1J m 9.18 3.94   9 1.31 0.429 3.1, 15.9 1.13
DBA/2J f 8.56 4.07   9 1.36 0.476 4.4, 16.7 0.58
DBA/2J m 6.34 5.15   13 1.43 0.812 0.6, 18.8 0.17
FVB/NJ f 4.75 3.66   10 1.16 0.771 0.8, 12.4 -0.44
FVB/NJ m 4.82 3.92   18 0.924 0.813 0.7, 16.6 -0.34
I/LnJ f 4.42 2.01   5 0.899 0.455 2.0, 6.7 -0.53
I/LnJ m 7.72 1.81   6 0.738 0.234 5.7, 10.0 0.64
JF1/MsJ f 5.21 3.08   11 0.93 0.592 0.9, 10.5 -0.32
JF1/MsJ m 2.67 1.44   4 0.72 0.539 1.6, 4.8 -1.07
LP/J f 5.6 3.65   9 1.22 0.651 1.0, 11.1 -0.21
LP/J m 2.69 1.65   10 0.522 0.613 1.0, 5.6 -1.06
MA/MyJ f 3.29 1.86   8 0.657 0.566 0.8, 6.4 -0.83
MA/MyJ m 2.85 1.06   2   0.75 0.372 2.1, 3.6 -1.0
MOLF/EiJ f 1.8 0.656   3 0.379 0.364 1.1, 2.4 -1.23
MOLF/EiJ m 8.85 1.63   2   1.15 0.184 7.7, 10.0 1.02
MSM/MsJ f 15.4 2.7   3 1.56 0.176 12.3, 17.4 2.43
NOD/ShiLtJ f 16.1 4.45   2   3.15 0.276 13.0, 19.3 2.61
NOD/ShiLtJ m 3.9 2.97   2   2.1 0.761 1.8, 6.0 -0.65
NZB/BlNJ f 4.67 3.69   4 1.85 0.79 1.7, 10.0 -0.46
NZB/BlNJ m 2.33 1.81   8 0.64 0.779 0.3, 4.0 -1.18
NZW/LacJ f 4.12 3.14   4 1.57 0.761 1.0, 7.3 -0.61
NZW/LacJ m 2.6 2.02   4 1.01 0.778 0.4, 5.1 -1.09
PERA/EiJ f 5.42 2.29   12 0.66 0.422 2.6, 10.6 -0.26
PERA/EiJ m 7.75 4.28   12 1.24 0.553 3.8, 15.8 0.65
PL/J f 3.9 3.31   3 1.91 0.848 1.0, 7.5 -0.67
PL/J m 2.85 1.06   2   0.75 0.372 2.1, 3.6 -1.0
PWK/PhJ f 7.43 6.97   6 2.84 0.937 2.2, 20.6 0.28
PWK/PhJ m 6.38 4.31   5 1.93 0.676 1.2, 12.2 0.19
RIIIS/J f 4.12 0.75   4 0.375 0.182 3.3, 5.1 -0.61
RIIIS/J m 4.83 2.54   12 0.733 0.526 0.6, 10.5 -0.34
SEA/GnJ f 7.25 2.45   11 0.74 0.339 2.6, 11.9 0.23
SEA/GnJ m 4.48 1.91   13 0.529 0.426 1.2, 7.8 -0.46
SJL/J f 3.55 5.08   13 1.41 1.43 0.1, 13.3 -0.76
SJL/J m 1.73 1.9   9 0.634 1.1 0.1, 5.1 -1.38
SM/J f 3.45 2.05   2   1.45 0.594 2.0, 4.9 -0.79
SM/J m 3.58 2.17   5 0.969 0.605 0.9, 6.6 -0.76
SPRET/EiJ f 4.48 3.15   19 0.722 0.702 0.4, 13.8 -0.51
SPRET/EiJ m 4.94 3.46   5 1.55 0.699 1.4, 9.6 -0.3
SWR/J f 0.133 0.0577   3 0.0333 0.433 0.1, 0.2 -1.68
SWR/J m 5.95 8.27   2   5.85 1.39 0.1, 11.8 0.04
WSB/EiJ f 8.29 4.26   11 1.28 0.514 0.9, 17.4 0.51
WSB/EiJ m 10.1 3.27   6 1.34 0.326 6.1, 15.9 1.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.915 0.885 5.6534 2.1766
129S1/SvImJ m 2.8389 0.9329 4.6713 1.0064
A/J f 3.5364 1.1934 5.8805 1.1923
A/J m 4.8417 1.1426 7.086 2.5974
AKR/J f 4.5625 1.3994 7.3112 1.8138
AKR/J m 5.46 1.7701 8.9368 1.9832
BALB/cByJ f 3.5833 1.1426 5.8276 1.339
BALB/cByJ m 6.8125 1.3994 9.5612 4.0638
BTBR T+ Itpr3tf/J f 2.7111 1.3193 5.3026 0.1196
BTBR T+ Itpr3tf/J m 2.4889 1.3193 5.0804 0.0
BUB/BnJ f 2.54 1.7701 6.0168 0.0
BUB/BnJ m 2.0 1.7701 5.4768 0.0
C3H/HeJ f 8.2154 1.0978 10.3716 6.0591
C3H/HeJ m 11.1818 1.1934 13.5259 8.8377
C57BL/10J f 6.3375 1.3994 9.0862 3.5888
C57BL/10J m 5.0625 1.3994 7.8112 2.3138
C57BL/6J f 12.0667 1.022 14.074 10.0593
C57BL/6J m 9.5818 1.1934 11.9259 7.2377
C57BLKS/J f 5.8818 1.1934 8.2259 3.5377
C57BLKS/J m 5.6125 1.3994 8.3612 2.8638
C57BR/cdJ f 8.7 1.1934 11.0441 6.3559
C57BR/cdJ m 5.575 1.3994 8.3237 2.8263
C57L/J f 11.1143 1.496 14.0528 8.1758
C57L/J m 10.2048 0.8637 11.9013 8.5082
C58/J f 5.1818 1.1934 7.5259 2.8377
C58/J m 9.6923 1.0978 11.8486 7.5361
CAST/EiJ f 13.74 1.022 15.7474 11.7326
CAST/EiJ m 13.2889 1.3193 15.8804 10.6974
CBA/J f 8.9429 1.496 11.8813 6.0044
CBA/J m 8.9429 1.496 11.8813 6.0044
CZECHII/EiJ f 8.4875 1.3994 11.2362 5.7388
CZECHII/EiJ m 5.6 2.2852 10.0886 1.1114
DBA/1J f 11.225 1.3994 13.9737 8.4763
DBA/1J m 9.1778 1.3193 11.7693 6.5863
DBA/2J f 8.5556 1.3193 11.147 5.9641
DBA/2J m 6.3385 1.0978 8.4947 4.1822
FVB/NJ f 4.75 1.2516 7.2085 2.2915
FVB/NJ m 4.8222 0.9329 6.6547 2.9898
I/LnJ f 4.42 1.7701 7.8968 0.9432
I/LnJ m 7.7167 1.6159 10.8906 4.5428
JF1/MsJ f 5.2091 1.1934 7.5532 2.865
JF1/MsJ m 2.675 1.979 6.5622 0.0
LP/J f 5.6 1.3193 8.1915 3.0085
LP/J m 2.69 1.2516 5.1485 0.2315
MA/MyJ f 3.2875 1.3994 6.0362 0.5388
MA/MyJ m 2.85 2.7988 8.3474 0.0
MOLF/EiJ f 1.8 2.2852 6.2886 0.0
MOLF/EiJ m 8.85 2.7988 14.3474 3.3526
NOD/ShiLtJ f 16.15 2.7988 21.6474 10.6526
NOD/ShiLtJ m 3.9 2.7988 9.3974 0.0
NZB/BlNJ f 4.675 1.979 8.5622 0.7878
NZB/BlNJ m 2.325 1.3994 5.0737 0.0
NZW/LacJ f 4.125 1.979 8.0122 0.2378
NZW/LacJ m 2.6 1.979 6.4872 0.0
PERA/EiJ f 5.4167 1.1426 7.661 3.1724
PERA/EiJ m 7.75 1.1426 9.9943 5.5057
PL/J f 3.9 2.2852 8.3886 0.0
PL/J m 2.85 2.7988 8.3474 0.0
PWK/PhJ f 7.4333 1.6159 10.6072 4.2594
PWK/PhJ m 6.38 1.7701 9.8568 2.9032
RIIIS/J f 4.125 1.979 8.0122 0.2378
RIIIS/J m 4.8333 1.1426 7.0776 2.589
SEA/GnJ f 7.2455 1.1934 9.5895 4.9014
SEA/GnJ m 4.4846 1.0978 6.6409 2.3284
SJL/J f 3.5538 1.0978 5.7101 1.3976
SJL/J m 1.7333 1.3193 4.3248 0.0
SM/J f 3.45 2.7988 8.9474 0.0
SM/J m 3.58 1.7701 7.0568 0.1032
SPRET/EiJ f 4.4842 0.908 6.2678 2.7006
SPRET/EiJ m 4.94 1.7701 8.4168 1.4632
SWR/J f 0.1333 2.2852 4.6219 0.0
SWR/J m 5.95 2.7988 11.4474 0.4526
WSB/EiJ f 8.2909 1.1934 10.635 5.9468
WSB/EiJ m 10.05 1.6159 13.2239 6.8761


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.3769 0.643 4.6399 2.114
A/J both 4.189 0.8261 5.8116 2.5664
AKR/J both 5.0113 1.1282 7.2273 2.7952
BALB/cByJ both 5.1979 0.9033 6.9722 3.4236
BTBR T+ Itpr3tf/J both 2.6 0.9329 4.4325 0.7675
BUB/BnJ both 2.27 1.2516 4.7285 0.0
C3H/HeJ both 9.6986 0.8108 11.2911 8.1061
C57BL/10J both 5.7 0.9895 7.6436 3.7564
C57BL/6J both 10.8242 0.7856 12.3673 9.2812
C57BLKS/J both 5.7472 0.9196 7.5534 3.9409
C57BR/cdJ both 7.1375 0.9196 8.9437 5.3313
C57L/J both 10.6595 0.8637 12.3561 8.963
C58/J both 7.4371 0.8108 9.0296 5.8446
CAST/EiJ both 13.5144 0.8344 15.1534 11.8754
CBA/J both 8.9429 1.0578 11.0207 6.865
CZECHII/EiJ both 7.0438 1.3398 9.6754 4.4121
DBA/1J both 10.2014 0.9616 12.0902 8.3125
DBA/2J both 7.447 0.8582 9.1326 5.7614
FVB/NJ both 4.7861 0.7805 6.3193 3.253
I/LnJ both 6.0683 1.1984 8.4222 3.7145
JF1/MsJ both 3.942 1.1555 6.2117 1.6724
LP/J both 4.145 0.9093 5.9311 2.3589
MA/MyJ both 3.0687 1.5646 6.1419 0.0
MOLF/EiJ both 5.325 1.8066 8.8735 1.7765
NOD/ShiLtJ both 10.025 1.979 13.9122 6.1378
NZB/BlNJ both 3.5 1.2119 5.8804 1.1196
NZW/LacJ both 3.3625 1.3994 6.1112 0.6138
PERA/EiJ both 6.5833 0.8079 8.1703 4.9964
PL/J both 3.375 1.8066 6.9235 0.0
PWK/PhJ both 6.9067 1.1984 9.2605 4.5528
RIIIS/J both 4.4792 1.1426 6.7235 2.2349
SEA/GnJ both 5.865 0.8108 7.4575 4.2725
SJL/J both 2.6436 0.8582 4.3292 0.958
SM/J both 3.515 1.6558 6.7673 0.2627
SPRET/EiJ both 4.7121 0.9947 6.6659 2.7583
SWR/J both 3.0417 1.8066 6.5902 0.0
WSB/EiJ both 9.1705 1.0044 11.1433 7.1976




  GWAS USING LINEAR MIXED MODELS