Project measure / variable:   Shimomura2   LL_period

ID, description, units MPD:52731   LL_period   free running period in constant light   [h]  
Data set, strains Shimomura2   inbred w/CC7   38 strains     sex: both     age: 10wks
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  STRAIN COMPARISON PLOT
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Shimomura2 - free running period in constant light



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested38 strains37 strains
Mean of the strain means24.9   h 25.0   h
Median of the strain means24.9   h 25.0   h
SD of the strain means± 0.638 ± 0.480
Coefficient of variation (CV)0.0256 0.0192
Min–max range of strain means23.9   –   26.8   h 24.0   –   26.0   h
Mean sample size per strain8.3   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.556 0.556 1.0774 0.2997
strain 35 134.2063 3.8345 7.4307 < 0.0001
sex:strain 35 31.6664 0.9048 1.7533 0.0055
Residuals 535 276.0778 0.516


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 24.8 1.09   18 0.257 0.044 22.9, 26.8 -0.21
129S1/SvImJ m 24.7 0.639   17 0.155 0.0259 23.1, 25.6 -0.62
A/J f 25.9 0.269   10 0.0849 0.0104 25.6, 26.4 1.52
A/J m 25.7 0.35   10 0.111 0.0136 25.3, 26.4 1.46
AKR/J f 25.9 0.588   8 0.208 0.0227 24.6, 26.5 1.52
AKR/J m 25.0 1.37   5 0.613 0.0548 22.7, 26.4 0.01
BALB/cByJ f 24.3 0.671   11 0.202 0.0276 23.2, 25.4 -0.99
BALB/cByJ m 24.0 0.767   8 0.271 0.032 23.1, 25.3 -2.08
BTBR T+ Itpr3tf/J f 24.9 0.905   6 0.369 0.0364 23.6, 25.7 -0.05
BTBR T+ Itpr3tf/J m 24.8 1.08   7 0.41 0.0437 22.8, 26.5 -0.41
BUB/BnJ f 24.3 0.804   5 0.36 0.0331 23.4, 25.6 -0.99
BUB/BnJ m 25.0 0.594   5 0.266 0.0238 24.1, 25.5 0.01
C3H/HeJ f 25.6 0.295   13 0.0818 0.0115 25.1, 26.3 1.05
C3H/HeJ m 25.2 0.459   11 0.138 0.0182 24.6, 25.8 0.42
C57BL/10J f 24.8 0.358   8 0.127 0.0145 24.2, 25.3 -0.21
C57BL/10J m 24.4 0.618   8 0.219 0.0253 23.1, 25.1 -1.24
C57BL/6J f 24.8 0.168   15 0.0434 0.00677 24.5, 25.1 -0.21
C57BL/6J m 24.7 0.501   11 0.151 0.0202 23.9, 25.4 -0.62
C57BLKS/J f 24.9 0.469   11 0.141 0.0188 23.7, 25.5 -0.05
C57BLKS/J m 25.1 0.561   8 0.198 0.0224 24.5, 26.0 0.21
C57BR/cdJ f 25.3 0.374   11 0.113 0.0148 24.8, 26.0 0.58
C57BR/cdJ m 24.5 0.134   10 0.0423 0.00545 24.3, 24.7 -1.04
C57L/J f 24.8 0.335   7 0.127 0.0135 24.2, 25.2 -0.21
C57L/J m 24.5 0.768   21 0.168 0.0313 23.3, 26.7 -1.04
C58/J f 25.6 0.321   10 0.101 0.0125 25.2, 26.1 1.05
C58/J m 25.2 0.271   12 0.0782 0.0108 24.5, 25.6 0.42
CAST/EiJ f 25.0 0.217   15 0.0559 0.00865 24.8, 25.5 0.11
CAST/EiJ m 25.1 0.255   9 0.085 0.0102 24.6, 25.3 0.21
CBA/J f 24.7 0.519   7 0.196 0.0211 23.8, 25.3 -0.36
CBA/J m 24.3 0.415   7 0.157 0.0171 23.7, 24.9 -1.45
CZECHII/EiJ f 24.3 0.804   7 0.304 0.0331 23.0, 25.0 -0.99
CZECHII/EiJ m 25.4 0.919   2   0.65 0.0363 24.7, 26.0 0.84
DBA/1J f 23.9 0.758   8 0.268 0.0317 22.7, 24.9 -1.62
DBA/1J m 24.7 0.381   9 0.127 0.0154 24.2, 25.4 -0.62
DBA/2J f 24.3 0.863   10 0.273 0.0355 23.4, 26.0 -0.99
DBA/2J m 25.3 0.387   12 0.112 0.0153 24.6, 25.9 0.63
FVB/NJ f 24.3 1.76   10 0.555 0.0721 21.6, 26.1 -0.99
FVB/NJ m 24.1 1.45   18 0.342 0.0601 21.6, 26.3 -1.87
I/LnJ f 25.1 0.858   5 0.384 0.0342 23.8, 25.9 0.26
I/LnJ m 24.8 0.506   6 0.207 0.0204 23.9, 25.4 -0.41
JF1/MsJ f 25.5 0.898   11 0.271 0.0352 22.9, 26.3 0.89
JF1/MsJ m 26.0 0.32   4 0.16 0.0123 25.8, 26.5 2.09
LP/J f 24.4 1.19   9 0.397 0.0488 22.8, 26.0 -0.83
LP/J m 25.2 0.238   10 0.0752 0.00943 24.8, 25.6 0.42
MA/MyJ f 25.2 0.761   8 0.269 0.0302 24.3, 26.5 0.42
MA/MyJ m 25.0 0.751   3 0.433 0.03 24.3, 25.8 0.01
MOLF/EiJ f 25.8 0.693   3 0.4 0.0269 25.0, 26.2 1.36
MOLF/EiJ m 25.1 0.566   2   0.4 0.0225 24.7, 25.5 0.21
MSM/MsJ f 24.7 1.56   3 0.902 0.0632 23.7, 26.5 -0.36
NOD/ShiLtJ f 24.1 0.283   2   0.2 0.0117 23.9, 24.3 -1.3
NOD/ShiLtJ m 24.9 0.424   2   0.3 0.017 24.6, 25.2 -0.2
NZB/BlNJ f 24.7 0.56   4 0.28 0.0227 24.2, 25.5 -0.36
NZB/BlNJ m 24.9 0.434   8 0.154 0.0175 24.4, 25.5 -0.2
NZW/LacJ f 24.9 1.14   4 0.569 0.0457 23.2, 25.6 -0.05
NZW/LacJ m 25.5 0.342   4 0.171 0.0134 25.1, 25.9 1.05
PERA/EiJ f 25.7 0.785   11 0.237 0.0306 23.8, 26.9 1.21
PERA/EiJ m 26.0 0.548   12 0.158 0.0211 25.0, 27.0 2.09
PL/J f 24.2 0.416   3 0.24 0.0172 23.9, 24.7 -1.15
PL/J m 25.4 0.354   2   0.25 0.0139 25.1, 25.6 0.84
PWK/PhJ f 24.6 0.893   6 0.365 0.0363 23.7, 26.0 -0.52
PWK/PhJ m 24.6 0.947   4 0.473 0.0384 23.9, 26.0 -0.83
RIIIS/J f 24.4 0.826   4 0.413 0.0338 23.2, 25.0 -0.83
RIIIS/J m 24.6 0.861   12 0.249 0.035 22.9, 25.6 -0.83
SEA/GnJ f 23.9 0.32   11 0.0964 0.0134 23.5, 24.6 -1.62
SEA/GnJ m 24.5 0.988   13 0.274 0.0404 23.3, 26.5 -1.04
SJL/J f 25.1 0.444   11 0.134 0.0176 24.2, 25.6 0.26
SJL/J m 25.3 0.444   8 0.157 0.0175 24.6, 25.9 0.63
SM/J f 26.8 0.0   1   0.0 0.0 26.8, 26.8 2.93
SM/J m 25.7 0.245   5 0.11 0.00953 25.4, 26.0 1.46
SPRET/EiJ f 25.6 0.33   19 0.0758 0.0129 24.7, 26.1 1.05
SPRET/EiJ m 25.4 0.241   5 0.108 0.00947 25.1, 25.7 0.84
SWR/J f 25.3 0.566   2   0.4 0.0224 24.9, 25.7 0.58
SWR/J m 24.9 3.04   2   2.15 0.122 22.7, 27.0 -0.2
WSB/EiJ f 25.0 0.522   11 0.157 0.0209 24.2, 25.7 0.11
WSB/EiJ m 25.4 0.829   6 0.339 0.0327 24.6, 26.4 0.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 24.7611 0.1693 25.0937 24.4285
129S1/SvImJ m 24.6706 0.1742 25.0128 24.3283
A/J f 25.89 0.2272 26.3362 25.4438
A/J m 25.73 0.2272 26.1762 25.2838
AKR/J f 25.8625 0.254 26.3614 25.3636
AKR/J m 24.98 0.3213 25.6111 24.3489
BALB/cByJ f 24.3273 0.2166 24.7527 23.9018
BALB/cByJ m 23.9625 0.254 24.4614 23.4636
BTBR T+ Itpr3tf/J f 24.8667 0.2933 25.4428 24.2906
BTBR T+ Itpr3tf/J m 24.8429 0.2715 25.3762 24.3095
BUB/BnJ f 24.28 0.3213 24.9111 23.6489
BUB/BnJ m 24.96 0.3213 25.5911 24.3289
C3H/HeJ f 25.6231 0.1992 26.0145 25.2317
C3H/HeJ m 25.1909 0.2166 25.6164 24.7654
C57BL/10J f 24.7625 0.254 25.2614 24.2636
C57BL/10J m 24.425 0.254 24.9239 23.9261
C57BL/6J f 24.84 0.1855 25.2044 24.4756
C57BL/6J m 24.7455 0.2166 25.1709 24.32
C57BLKS/J f 24.9273 0.2166 25.3527 24.5018
C57BLKS/J m 25.05 0.254 25.5489 24.5511
C57BR/cdJ f 25.3273 0.2166 25.7527 24.9018
C57BR/cdJ m 24.53 0.2272 24.9762 24.0838
C57L/J f 24.7714 0.2715 25.3048 24.2381
C57L/J m 24.519 0.1568 24.827 24.2111
C58/J f 25.597 0.2272 26.0432 25.1508
C58/J m 25.1667 0.2074 25.574 24.7593
CAST/EiJ f 25.0467 0.1855 25.411 24.6823
CAST/EiJ m 25.0667 0.2395 25.537 24.5963
CBA/J f 24.6571 0.2715 25.1905 24.1238
CBA/J m 24.3286 0.2715 24.8619 23.7952
CZECHII/EiJ f 24.3 0.2715 24.8334 23.7666
CZECHII/EiJ m 25.35 0.508 26.3478 24.3522
DBA/1J f 23.9 0.254 24.3989 23.4011
DBA/1J m 24.6667 0.2395 25.137 24.1963
DBA/2J f 24.32 0.2272 24.7662 23.8738
DBA/2J m 25.2667 0.2074 25.674 24.8593
FVB/NJ f 24.33 0.2272 24.7762 23.8838
FVB/NJ m 24.1444 0.1693 24.4771 23.8118
I/LnJ f 25.12 0.3213 25.7511 24.4889
I/LnJ m 24.8 0.2933 25.3761 24.2239
JF1/MsJ f 25.4818 0.2166 25.9073 25.0563
JF1/MsJ m 26.025 0.3592 26.7306 25.3194
LP/J f 24.4333 0.2395 24.9037 23.963
LP/J m 25.21 0.2272 25.6562 24.7638
MA/MyJ f 25.2125 0.254 25.7114 24.7136
MA/MyJ m 25.0333 0.4147 25.8481 24.2186
MOLF/EiJ f 25.8 0.4147 26.6147 24.9853
MOLF/EiJ m 25.1 0.508 26.0978 24.1022
NOD/ShiLtJ f 24.1 0.508 25.0978 23.1022
NOD/ShiLtJ m 24.9 0.508 25.8978 23.9022
NZB/BlNJ f 24.7 0.3592 25.4056 23.9944
NZB/BlNJ m 24.85 0.254 25.3489 24.3511
NZW/LacJ f 24.9 0.3592 25.6056 24.1944
NZW/LacJ m 25.55 0.3592 26.2556 24.8444
PERA/EiJ f 25.6809 0.2166 26.1064 25.2554
PERA/EiJ m 26.025 0.2074 26.4324 25.6176
PL/J f 24.2333 0.4147 25.0481 23.4186
PL/J m 25.35 0.508 26.3478 24.3522
PWK/PhJ f 24.5833 0.2933 25.1594 24.0072
PWK/PhJ m 24.65 0.3592 25.3556 23.9444
RIIIS/J f 24.425 0.3592 25.1306 23.7194
RIIIS/J m 24.5833 0.2074 24.9907 24.176
SEA/GnJ f 23.9273 0.2166 24.3527 23.5018
SEA/GnJ m 24.4692 0.1992 24.8606 24.0779
SJL/J f 25.1455 0.2166 25.5709 24.72
SJL/J m 25.3375 0.254 25.8364 24.8386
SPRET/EiJ f 25.6158 0.1648 25.9395 25.2921
SPRET/EiJ m 25.44 0.3213 26.0711 24.8089
SWR/J f 25.3 0.508 26.2978 24.3022
SWR/J m 24.85 0.508 25.8478 23.8522
WSB/EiJ f 24.9545 0.2166 25.38 24.5291
WSB/EiJ m 25.4 0.2933 25.9761 24.8239


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 24.7158 0.1215 24.9545 24.4772
A/J both 25.81 0.1606 26.1255 25.4945
AKR/J both 25.4212 0.2048 25.8235 25.019
BALB/cByJ both 24.1449 0.1669 24.4727 23.817
BTBR T+ Itpr3tf/J both 24.8548 0.1998 25.2473 24.4622
BUB/BnJ both 24.62 0.2272 25.0662 24.1738
C3H/HeJ both 25.407 0.1471 25.696 25.1179
C57BL/10J both 24.5937 0.1796 24.9465 24.241
C57BL/6J both 24.7927 0.1426 25.0728 24.5126
C57BLKS/J both 24.9886 0.1669 25.3165 24.6608
C57BR/cdJ both 24.9286 0.1569 25.2369 24.6204
C57L/J both 24.6452 0.1568 24.9532 24.3373
C58/J both 25.3818 0.1538 25.6839 25.0797
CAST/EiJ both 25.0567 0.1514 25.3542 24.7592
CBA/J both 24.4929 0.192 24.87 24.1157
CZECHII/EiJ both 24.825 0.288 25.3907 24.2593
DBA/1J both 24.2833 0.1745 24.6262 23.9405
DBA/2J both 24.7933 0.1538 25.0954 24.4912
FVB/NJ both 24.2372 0.1417 24.5155 23.9589
I/LnJ both 24.96 0.2175 25.3872 24.5328
JF1/MsJ both 25.7534 0.2097 26.1654 25.3414
LP/J both 24.8217 0.165 25.1459 24.4975
MA/MyJ both 25.1229 0.2432 25.6006 24.6452
MOLF/EiJ both 25.45 0.3279 26.0941 24.8059
NOD/ShiLtJ both 24.5 0.3592 25.2056 23.7944
NZB/BlNJ both 24.775 0.22 25.2071 24.3429
NZW/LacJ both 25.225 0.254 25.7239 24.7261
PERA/EiJ both 25.853 0.1499 26.1475 25.5584
PL/J both 24.7917 0.3279 25.4358 24.1476
PWK/PhJ both 24.6167 0.2318 25.0721 24.1612
RIIIS/J both 24.5042 0.2074 24.9115 24.0968
SEA/GnJ both 24.1983 0.1471 24.4873 23.9092
SJL/J both 25.2415 0.1669 25.5693 24.9136
SPRET/EiJ both 25.5279 0.1805 25.8825 25.1733
SWR/J both 25.075 0.3592 25.7806 24.3694
WSB/EiJ both 25.1773 0.1823 25.5354 24.8192




  GWAS USING LINEAR MIXED MODELS