Project measure / variable:   Rusyn6   Ppara_liver_tce

ID, description, units MPD:51230   Ppara_liver_tce   Ppara, mRNA in liver, relative to control group   [ratio]  
trichloroethylene study
Data set, strains Rusyn6   inbred   7 strains     sex: m     age: 6-7wks
Procedure RNA expression profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rusyn6 - Ppara, mRNA in liver, relative to control group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested7 strains
Mean of the strain means1.13   ratio
Median of the strain means1.20   ratio
SD of the strain means± 0.375
Coefficient of variation (CV)0.332
Min–max range of strain means0.367   –   1.43   ratio
Mean sample size per strain2.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 6 2.5188 0.4198 6.155 0.003
Residuals 13 0.8867 0.0682


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.0 0.283   2   0.2 0.283 0.8, 1.2 -0.34
A/J m 1.1 0.265   3 0.153 0.241 0.9, 1.4 -0.08
BTBR T+ Itpr3tf/J m 1.2 0.173   3 0.1 0.144 1.0, 1.3 0.19
C57BL/6J m 1.43 0.404   3 0.233 0.282 1.0, 1.8 0.81
CAST/EiJ m 0.367 0.0577   3 0.0333 0.157 0.3, 0.4 -2.03
NOD/ShiLtJ m 1.43 0.289   3 0.167 0.201 1.1, 1.6 0.81
NZW/LacJ m 1.37 0.231   3 0.133 0.169 1.1, 1.5 0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.0 0.1847 1.399 0.601
A/J m 1.1 0.1508 1.4257 0.7743
BTBR T+ Itpr3tf/J m 1.2 0.1508 1.5257 0.8743
C57BL/6J m 1.4333 0.1508 1.7591 1.1076
CAST/EiJ m 0.3667 0.1508 0.6924 0.0409
NOD/ShiLtJ m 1.4333 0.1508 1.7591 1.1076
NZW/LacJ m 1.3667 0.1508 1.6924 1.0409




  GWAS USING LINEAR MIXED MODELS