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Project measure / variable:   HMDPpheno9   LGPC_2

ID, description, units MPD:50410   LGPC_2   liver 2-linoleoylglycerophosphocholine (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 2-linoleoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means2801529   None
Median of the strain means2215487   None
SD of the strain means± 1881200
Coefficient of variation (CV)0.671
Min–max range of strain means456185   –   10940042   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 85746524526686.9 4083167834604.14 2.3654 0.013
Residuals 33 56963885342474.4 1726178343711.35


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 6326610.0 0.0   1   0.0 0.0 6326610.0, 6326610.0 1.87
A/J m 1313636.0 1340277.0   2   947719.0 1.02 365917.0, 2261355.0 -0.79
AKR/J m 1473048.0 0.0   1   0.0 0.0 1473048.0, 1473048.0 -0.71
AXB10/PgnJ m 1905206.0 0.0   1   0.0 0.0 1905206.0, 1905206.0 -0.48
AXB12/PgnJ m 1017961.0 0.0   1   0.0 0.0 1017961.0, 1017961.0 -0.95
AXB13/PgnJ m 991607.0 0.0   1   0.0 0.0 991607.0, 991607.0 -0.96
AXB15/PgnJ m 615941.0 0.0   1   0.0 0.0 615941.0, 615941.0 -1.16
AXB19a/PgnJ m 3030204.0 0.0   1   0.0 0.0 3030204.0, 3030204.0 0.12
AXB19b/PgnJ m 6554611.0 2157354.0   2   1525480.0 0.329 5029131.0, 8080090.0 2.0
AXB19/PgnJ m 5892674.0 0.0   1   0.0 0.0 5892674.0, 5892674.0 1.64
AXB1/PgnJ m 10940042.0 0.0   1   0.0 0.0 10940042.0, 10940042.0 4.33
AXB23/PgnJ m 3403458.0 0.0   1   0.0 0.0 3403458.0, 3403458.0 0.32
AXB24/PgnJ m 1960107.0 1760803.0   2   1245076.0 0.898 715031.0, 3205182.0 -0.45
AXB2/PgnJ m 1895097.0 0.0   1   0.0 0.0 1895097.0, 1895097.0 -0.48
AXB4/PgnJ m 3143132.0 0.0   1   0.0 0.0 3143132.0, 3143132.0 0.18
AXB5/PgnJ m 1546680.0 0.0   1   0.0 0.0 1546680.0, 1546680.0 -0.67
AXB6/PgnJ m 2366688.0 0.0   1   0.0 0.0 2366688.0, 2366688.0 -0.23
AXB8/PgnJ m 1112451.0 0.0   1   0.0 0.0 1112451.0, 1112451.0 -0.9
BALB/cJ m 1846496.0 1068016.0   3 616619.0 0.578 980404.0, 3039852.0 -0.51
BTBR T+ Itpr3tf/J m 3179654.0 0.0   1   0.0 0.0 3179654.0, 3179654.0 0.2
BUB/BnJ m 3087403.0 0.0   1   0.0 0.0 3087403.0, 3087403.0 0.15
BXA11/PgnJ m 1092269.0 0.0   1   0.0 0.0 1092269.0, 1092269.0 -0.91
BXA12/PgnJ m 1282874.0 0.0   1   0.0 0.0 1282874.0, 1282874.0 -0.81
BXA13/PgnJ m 3794548.0 0.0   1   0.0 0.0 3794548.0, 3794548.0 0.53
BXA14/PgnJ m 6024569.0 0.0   1   0.0 0.0 6024569.0, 6024569.0 1.71
BXA16/PgnJ m 1798555.0 297108.0   2   210087.0 0.165 1588468.0, 2008642.0 -0.53
BXA1/PgnJ m 1635966.0 0.0   1   0.0 0.0 1635966.0, 1635966.0 -0.62
BXA24/PgnJ m 3041628.0 0.0   1   0.0 0.0 3041628.0, 3041628.0 0.13
BXA25/PgnJ m 1540043.0 0.0   1   0.0 0.0 1540043.0, 1540043.0 -0.67
BXA26/PgnJ m 3133748.0 0.0   1   0.0 0.0 3133748.0, 3133748.0 0.18
BXA2/PgnJ m 2194314.0 0.0   1   0.0 0.0 2194314.0, 2194314.0 -0.32
BXA4/PgnJ m 2066491.0 0.0   1   0.0 0.0 2066491.0, 2066491.0 -0.39
BXA7/PgnJ m 2245834.0 0.0   1   0.0 0.0 2245834.0, 2245834.0 -0.3
BXA8/PgnJ m 1626357.0 0.0   1   0.0 0.0 1626357.0, 1626357.0 -0.62
BXD11/TyJ m 1327072.0 0.0   1   0.0 0.0 1327072.0, 1327072.0 -0.78
BXD12/TyJ m 6536770.0 0.0   1   0.0 0.0 6536770.0, 6536770.0 1.99
BXD13/TyJ m 1828783.0 0.0   1   0.0 0.0 1828783.0, 1828783.0 -0.52
BXD14/TyJ m 6134595.0 0.0   1   0.0 0.0 6134595.0, 6134595.0 1.77
BXD15/TyJ m 3608991.0 0.0   1   0.0 0.0 3608991.0, 3608991.0 0.43
BXD18/TyJ m 1547628.0 0.0   1   0.0 0.0 1547628.0, 1547628.0 -0.67
BXD19/TyJ m 2713615.0 64089.0   2   45318.0 0.0236 2668298.0, 2758933.0 -0.05
BXD1/TyJ m 2284058.0 0.0   1   0.0 0.0 2284058.0, 2284058.0 -0.28
BXD20/TyJ m 3414341.0 0.0   1   0.0 0.0 3414341.0, 3414341.0 0.33
BXD21/TyJ m 1100496.0 0.0   1   0.0 0.0 1100496.0, 1100496.0 -0.9
BXD22/TyJ m 2685309.0 0.0   1   0.0 0.0 2685309.0, 2685309.0 -0.06
BXD24/TyJ m 1819256.0 0.0   1   0.0 0.0 1819256.0, 1819256.0 -0.52
BXD24/TyJ-Cep290rd16/J m 1715871.0 0.0   1   0.0 0.0 1715871.0, 1715871.0 -0.58
BXD28/TyJ m 1881569.0 401752.0   2   284081.0 0.214 1597488.0, 2165651.0 -0.49
BXD29-Tlr4lps-2J/J m 2081616.0 0.0   1   0.0 0.0 2081616.0, 2081616.0 -0.38
BXD2/TyJ m 2465933.0 0.0   1   0.0 0.0 2465933.0, 2465933.0 -0.18
BXD32/TyJ m 1211985.0 0.0   1   0.0 0.0 1211985.0, 1211985.0 -0.84
BXD33/TyJ m 5076317.0 0.0   1   0.0 0.0 5076317.0, 5076317.0 1.21
BXD34/TyJ m 1677531.0 0.0   1   0.0 0.0 1677531.0, 1677531.0 -0.6
BXD36/TyJ m 926288.0 0.0   1   0.0 0.0 926288.0, 926288.0 -1.0
BXD38/TyJ m 1544402.0 0.0   1   0.0 0.0 1544402.0, 1544402.0 -0.67
BXD39/TyJ m 1588884.0 0.0   1   0.0 0.0 1588884.0, 1588884.0 -0.64
BXD40/TyJ m 1938808.0 0.0   1   0.0 0.0 1938808.0, 1938808.0 -0.46
BXD42/TyJ m 3196466.0 0.0   1   0.0 0.0 3196466.0, 3196466.0 0.21
BXD5/TyJ m 2967435.0 0.0   1   0.0 0.0 2967435.0, 2967435.0 0.09
BXD6/TyJ m 3576234.0 0.0   1   0.0 0.0 3576234.0, 3576234.0 0.41
BXD8/TyJ m 1074897.0 0.0   1   0.0 0.0 1074897.0, 1074897.0 -0.92
BXD9/TyJ m 3217485.0 0.0   1   0.0 0.0 3217485.0, 3217485.0 0.22
BXH10/TyJ m 3107216.0 0.0   1   0.0 0.0 3107216.0, 3107216.0 0.16
BXH19/TyJ m 9926535.0 0.0   1   0.0 0.0 9926535.0, 9926535.0 3.79
BXH20/KccJ m 2208429.0 0.0   1   0.0 0.0 2208429.0, 2208429.0 -0.32
BXH22/KccJ m 2222545.0 0.0   1   0.0 0.0 2222545.0, 2222545.0 -0.31
BXH2/TyJ m 4074415.0 0.0   1   0.0 0.0 4074415.0, 4074415.0 0.68
BXH4/TyJ m 3077201.0 219659.0   2   155323.0 0.0714 2921879.0, 3232524.0 0.15
BXH6/TyJ m 3685329.0 0.0   1   0.0 0.0 3685329.0, 3685329.0 0.47
BXH7/TyJ m 5290204.0 0.0   1   0.0 0.0 5290204.0, 5290204.0 1.32
BXH8/TyJ m 2786636.0 0.0   1   0.0 0.0 2786636.0, 2786636.0 -0.01
BXH9/TyJ m 1683352.0 0.0   1   0.0 0.0 1683352.0, 1683352.0 -0.59
C3H/HeJ m 2690905.0 827392.0   2   585054.0 0.307 2105851.0, 3275960.0 -0.06
C57BL/6J m 1458314.0 1130102.0   5 505397.0 0.775 154892.0, 3020094.0 -0.71
C57L/J m 965052.0 0.0   1   0.0 0.0 965052.0, 965052.0 -0.98
C58/J m 4983701.0 0.0   1   0.0 0.0 4983701.0, 4983701.0 1.16
CAST/EiJ m 5707673.0 0.0   1   0.0 0.0 5707673.0, 5707673.0 1.54
CBA/J m 1718693.0 0.0   1   0.0 0.0 1718693.0, 1718693.0 -0.58
CE/J m 2340792.0 0.0   1   0.0 0.0 2340792.0, 2340792.0 -0.24
CXB11/HiAJ m 1156326.0 1091158.0   2   771565.0 0.944 384761.0, 1927891.0 -0.87
CXB12/HiAJ m 1172223.0 1305300.0   2   922986.0 1.11 249237.0, 2095210.0 -0.87
CXB13/HiAJ m 1881600.0 503391.0   3 290633.0 0.268 1324650.0, 2304151.0 -0.49
CXB1/ByJ m 4020284.0 1508376.0   3 870861.0 0.375 2997083.0, 5752536.0 0.65
CXB2/ByJ m 1687621.0 314191.0   2   222166.0 0.186 1465454.0, 1909787.0 -0.59
CXB3/ByJ m 2767082.0 497056.0   2   351472.0 0.18 2415610.0, 3118554.0 -0.02
CXB4/ByJ m 1551898.0 585890.0   2   414287.0 0.378 1137611.0, 1966186.0 -0.66
CXB6/ByJ m 986619.0 1457384.0   3 841421.0 1.48 23390.0, 2663269.0 -0.96
CXB7/ByJ m 2033634.0 392265.0   2   277373.0 0.193 1756261.0, 2311008.0 -0.41
CXB8/HiAJ m 3611039.0 2408296.0   3 1390430.0 0.667 866979.0, 5373568.0 0.43
CXB9/HiAJ m 456185.0 469420.0   3 271020.0 1.03 35852.0, 962738.0 -1.25
DBA/2J m 3188637.0 2156658.0   4 1078329.0 0.676 1574438.0, 6369734.0 0.21
FVB/NJ m 3125237.0 0.0   1   0.0 0.0 3125237.0, 3125237.0 0.17
I/LnJ m 2519848.0 0.0   1   0.0 0.0 2519848.0, 2519848.0 -0.15
KK/HlJ m 2049431.0 0.0   1   0.0 0.0 2049431.0, 2049431.0 -0.4
LG/J m 5019901.0 0.0   1   0.0 0.0 5019901.0, 5019901.0 1.18
LP/J m 3274932.0 0.0   1   0.0 0.0 3274932.0, 3274932.0 0.25
MA/MyJ m 1291008.0 0.0   1   0.0 0.0 1291008.0, 1291008.0 -0.8
NOD/ShiLtJ m 1862324.0 0.0   1   0.0 0.0 1862324.0, 1862324.0 -0.5
NON/ShiLtJ m 8926958.0 0.0   1   0.0 0.0 8926958.0, 8926958.0 3.26
NZW/LacJ m 1364110.0 0.0   1   0.0 0.0 1364110.0, 1364110.0 -0.76
PL/J m 3573306.0 0.0   1   0.0 0.0 3573306.0, 3573306.0 0.41
RIIIS/J m 780262.0 0.0   1   0.0 0.0 780262.0, 780262.0 -1.07
SEA/GnJ m 2752179.0 0.0   1   0.0 0.0 2752179.0, 2752179.0 -0.03
SJL/J m 5396241.0 0.0   1   0.0 0.0 5396241.0, 5396241.0 1.38
SM/J m 4192670.0 0.0   1   0.0 0.0 4192670.0, 4192670.0 0.74
SWR/J m 2171025.0 0.0   1   0.0 0.0 2171025.0, 2171025.0 -0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1313636.05 929025.9264 3203753.5089 0.0
AXB19b/PgnJ m 6554610.75 929025.9264 8444728.2089 4664493.2911
AXB24/PgnJ m 1960106.7 929025.9264 3850224.1589 69989.2411
BALB/cJ m 1846495.5333 758546.4925 3389769.9761 303221.0906
BXA16/PgnJ m 1798555.4 929025.9264 3688672.8589 0.0
BXD19/TyJ m 2713615.25 929025.9264 4603732.7089 823497.7911
BXD28/TyJ m 1881569.4 929025.9264 3771686.8589 0.0
BXH4/TyJ m 3077201.4 929025.9264 4967318.8589 1187083.9411
C3H/HeJ m 2690905.4 929025.9264 4581022.8589 800787.9411
C57BL/6J m 1458313.58 587567.5865 2653728.8231 262898.3369
CXB11/HiAJ m 1156325.8 929025.9264 3046443.2589 0.0
CXB12/HiAJ m 1172223.2 929025.9264 3062340.6589 0.0
CXB13/HiAJ m 1881600.3 758546.4925 3424874.7428 338325.8572
CXB1/ByJ m 4020283.8667 758546.4925 5563558.3094 2477009.4239
CXB2/ByJ m 1687620.55 929025.9264 3577738.0089 0.0
CXB3/ByJ m 2767082.15 929025.9264 4657199.6089 876964.6911
CXB4/ByJ m 1551898.4 929025.9264 3442015.8589 0.0
CXB6/ByJ m 986618.8667 758546.4925 2529893.3094 0.0
CXB7/ByJ m 2033634.4 929025.9264 3923751.8589 143516.9411
CXB8/HiAJ m 3611038.9667 758546.4925 5154313.4094 2067764.5239
CXB9/HiAJ m 456185.2 758546.4925 1999459.6428 0.0
DBA/2J m 3188636.65 656920.5324 4525151.5224 1852121.7776




  GWAS USING LINEAR MIXED MODELS