Project measure / variable:   HMDPpheno8   BHBA

ID, description, units MPD:50351   BHBA   liver 3-hydroxybutyrate (BHBA) (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver 3-hydroxybutyrate (BHBA) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1988346   None
Median of the strain means1845650   None
SD of the strain means± 662764
Coefficient of variation (CV)0.333
Min–max range of strain means634005   –   4241786   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 26390517009639.3 1256691286173.3 2.0663 0.029
Residuals 34 20677813584432.1 608170987777.414


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1408111.0 0.0   1   0.0 0.0 1408111.0, 1408111.0 -0.88
A/J m 3484357.0 1008374.0   2   713028.0 0.289 2771330.0, 4197385.0 2.26
AKR/J m 1673770.0 0.0   1   0.0 0.0 1673770.0, 1673770.0 -0.47
AXB10/PgnJ m 2074396.0 0.0   1   0.0 0.0 2074396.0, 2074396.0 0.13
AXB12/PgnJ m 1809115.0 0.0   1   0.0 0.0 1809115.0, 1809115.0 -0.27
AXB13/PgnJ m 2694562.0 0.0   1   0.0 0.0 2694562.0, 2694562.0 1.07
AXB15/PgnJ m 2350762.0 0.0   1   0.0 0.0 2350762.0, 2350762.0 0.55
AXB19a/PgnJ m 2662830.0 0.0   1   0.0 0.0 2662830.0, 2662830.0 1.02
AXB19b/PgnJ m 1353800.0 333667.0   2   235938.0 0.246 1117862.0, 1589739.0 -0.96
AXB19/PgnJ m 2696058.0 0.0   1   0.0 0.0 2696058.0, 2696058.0 1.07
AXB1/PgnJ m 2339916.0 0.0   1   0.0 0.0 2339916.0, 2339916.0 0.53
AXB23/PgnJ m 1979648.0 0.0   1   0.0 0.0 1979648.0, 1979648.0 -0.01
AXB24/PgnJ m 1731251.0 639519.0   2   452208.0 0.369 1279042.0, 2183459.0 -0.39
AXB2/PgnJ m 1679692.0 0.0   1   0.0 0.0 1679692.0, 1679692.0 -0.47
AXB4/PgnJ m 3690554.0 0.0   1   0.0 0.0 3690554.0, 3690554.0 2.57
AXB5/PgnJ m 1954390.0 0.0   1   0.0 0.0 1954390.0, 1954390.0 -0.05
AXB6/PgnJ m 2470932.0 0.0   1   0.0 0.0 2470932.0, 2470932.0 0.73
AXB8/PgnJ m 1663359.0 0.0   1   0.0 0.0 1663359.0, 1663359.0 -0.49
BALB/cJ m 1358742.0 154150.0   3 88998.0 0.113 1205913.0, 1514179.0 -0.95
BTBR T+ Itpr3tf/J m 2608086.0 0.0   1   0.0 0.0 2608086.0, 2608086.0 0.94
BUB/BnJ m 1843406.0 0.0   1   0.0 0.0 1843406.0, 1843406.0 -0.22
BXA11/PgnJ m 2176370.0 0.0   1   0.0 0.0 2176370.0, 2176370.0 0.28
BXA12/PgnJ m 2706843.0 0.0   1   0.0 0.0 2706843.0, 2706843.0 1.08
BXA13/PgnJ m 2018406.0 0.0   1   0.0 0.0 2018406.0, 2018406.0 0.05
BXA14/PgnJ m 634005.0 0.0   1   0.0 0.0 634005.0, 634005.0 -2.04
BXA16/PgnJ m 2013683.0 407199.0   2   287933.0 0.202 1725750.0, 2301616.0 0.04
BXA1/PgnJ m 2297745.0 0.0   1   0.0 0.0 2297745.0, 2297745.0 0.47
BXA24/PgnJ m 1743390.0 0.0   1   0.0 0.0 1743390.0, 1743390.0 -0.37
BXA25/PgnJ m 4241786.0 0.0   1   0.0 0.0 4241786.0, 4241786.0 3.4
BXA26/PgnJ m 1340297.0 0.0   1   0.0 0.0 1340297.0, 1340297.0 -0.98
BXA2/PgnJ m 1398926.0 0.0   1   0.0 0.0 1398926.0, 1398926.0 -0.89
BXA4/PgnJ m 3423398.0 0.0   1   0.0 0.0 3423398.0, 3423398.0 2.17
BXA7/PgnJ m 1737089.0 0.0   1   0.0 0.0 1737089.0, 1737089.0 -0.38
BXA8/PgnJ m 2691017.0 0.0   1   0.0 0.0 2691017.0, 2691017.0 1.06
BXD11/TyJ m 978188.0 0.0   1   0.0 0.0 978188.0, 978188.0 -1.52
BXD12/TyJ m 3356664.0 0.0   1   0.0 0.0 3356664.0, 3356664.0 2.06
BXD13/TyJ m 1355230.0 0.0   1   0.0 0.0 1355230.0, 1355230.0 -0.96
BXD14/TyJ m 1794324.0 0.0   1   0.0 0.0 1794324.0, 1794324.0 -0.29
BXD15/TyJ m 1371199.0 0.0   1   0.0 0.0 1371199.0, 1371199.0 -0.93
BXD18/TyJ m 1732205.0 0.0   1   0.0 0.0 1732205.0, 1732205.0 -0.39
BXD19/TyJ m 1402605.0 104315.0   2   73762.0 0.0744 1328843.0, 1476366.0 -0.88
BXD1/TyJ m 2392400.0 0.0   1   0.0 0.0 2392400.0, 2392400.0 0.61
BXD20/TyJ m 2595700.0 0.0   1   0.0 0.0 2595700.0, 2595700.0 0.92
BXD21/TyJ m 2342806.0 0.0   1   0.0 0.0 2342806.0, 2342806.0 0.53
BXD22/TyJ m 2598406.0 0.0   1   0.0 0.0 2598406.0, 2598406.0 0.92
BXD24/TyJ m 1881574.0 0.0   1   0.0 0.0 1881574.0, 1881574.0 -0.16
BXD24/TyJ-Cep290rd16/J m 1832692.0 0.0   1   0.0 0.0 1832692.0, 1832692.0 -0.23
BXD28/TyJ m 1847895.0 164524.0   2   116336.0 0.089 1731559.0, 1964231.0 -0.21
BXD29-Tlr4lps-2J/J m 2409559.0 0.0   1   0.0 0.0 2409559.0, 2409559.0 0.64
BXD2/TyJ m 1129309.0 0.0   1   0.0 0.0 1129309.0, 1129309.0 -1.3
BXD32/TyJ m 2654329.0 0.0   1   0.0 0.0 2654329.0, 2654329.0 1.0
BXD33/TyJ m 1911493.0 0.0   1   0.0 0.0 1911493.0, 1911493.0 -0.12
BXD34/TyJ m 1256468.0 0.0   1   0.0 0.0 1256468.0, 1256468.0 -1.1
BXD36/TyJ m 1020379.0 0.0   1   0.0 0.0 1020379.0, 1020379.0 -1.46
BXD38/TyJ m 651704.0 0.0   1   0.0 0.0 651704.0, 651704.0 -2.02
BXD39/TyJ m 1769903.0 0.0   1   0.0 0.0 1769903.0, 1769903.0 -0.33
BXD40/TyJ m 1824792.0 0.0   1   0.0 0.0 1824792.0, 1824792.0 -0.25
BXD42/TyJ m 1963858.0 0.0   1   0.0 0.0 1963858.0, 1963858.0 -0.04
BXD5/TyJ m 1559758.0 0.0   1   0.0 0.0 1559758.0, 1559758.0 -0.65
BXD6/TyJ m 2444144.0 0.0   1   0.0 0.0 2444144.0, 2444144.0 0.69
BXD8/TyJ m 2690002.0 0.0   1   0.0 0.0 2690002.0, 2690002.0 1.06
BXD9/TyJ m 1087997.0 0.0   1   0.0 0.0 1087997.0, 1087997.0 -1.36
BXH10/TyJ m 1437801.0 0.0   1   0.0 0.0 1437801.0, 1437801.0 -0.83
BXH19/TyJ m 1387514.0 0.0   1   0.0 0.0 1387514.0, 1387514.0 -0.91
BXH20/KccJ m 1850604.0 0.0   1   0.0 0.0 1850604.0, 1850604.0 -0.21
BXH22/KccJ m 1657145.0 0.0   1   0.0 0.0 1657145.0, 1657145.0 -0.5
BXH2/TyJ m 1893581.0 0.0   1   0.0 0.0 1893581.0, 1893581.0 -0.14
BXH4/TyJ m 3059701.0 326262.0   2   230702.0 0.107 2828998.0, 3290403.0 1.62
BXH6/TyJ m 1804919.0 0.0   1   0.0 0.0 1804919.0, 1804919.0 -0.28
BXH7/TyJ m 2060818.0 0.0   1   0.0 0.0 2060818.0, 2060818.0 0.11
BXH8/TyJ m 1818094.0 0.0   1   0.0 0.0 1818094.0, 1818094.0 -0.26
BXH9/TyJ m 2684606.0 0.0   1   0.0 0.0 2684606.0, 2684606.0 1.05
C3H/HeJ m 1665056.0 31904.0   2   22560.0 0.0192 1642496.0, 1687615.0 -0.49
C57BL/6J m 1703150.0 293020.0   5 131042.0 0.172 1437097.0, 2155533.0 -0.43
C57L/J m 2282015.0 0.0   1   0.0 0.0 2282015.0, 2282015.0 0.44
C58/J m 1675708.0 0.0   1   0.0 0.0 1675708.0, 1675708.0 -0.47
CAST/EiJ m 843864.0 0.0   1   0.0 0.0 843864.0, 843864.0 -1.73
CBA/J m 1722776.0 0.0   1   0.0 0.0 1722776.0, 1722776.0 -0.4
CE/J m 1759460.0 0.0   1   0.0 0.0 1759460.0, 1759460.0 -0.35
CXB11/HiAJ m 2247788.0 1073034.0   2   758750.0 0.477 1489038.0, 3006538.0 0.39
CXB12/HiAJ m 2418161.0 501879.0   2   354882.0 0.208 2063278.0, 2773043.0 0.65
CXB13/HiAJ m 3757502.0 2526807.0   3 1458853.0 0.672 2020245.0, 6656207.0 2.67
CXB1/ByJ m 1579123.0 445332.0   3 257113.0 0.282 1079751.0, 1935070.0 -0.62
CXB2/ByJ m 3233152.0 1065416.0   3 615118.0 0.33 2003197.0, 3870880.0 1.88
CXB3/ByJ m 2052447.0 384982.0   2   272223.0 0.188 1780224.0, 2324670.0 0.1
CXB4/ByJ m 1551891.0 487675.0   2   344839.0 0.314 1207052.0, 1896730.0 -0.66
CXB6/ByJ m 2001191.0 584014.0   3 337181.0 0.292 1393696.0, 2558482.0 0.02
CXB7/ByJ m 2766568.0 161839.0   2   114438.0 0.0585 2652130.0, 2881006.0 1.17
CXB8/HiAJ m 2389608.0 385004.0   3 222282.0 0.161 1992313.0, 2761014.0 0.61
CXB9/HiAJ m 1714233.0 307680.0   3 177639.0 0.179 1528625.0, 2069390.0 -0.41
DBA/2J m 1945006.0 78867.0   4 39434.0 0.0405 1862612.0, 2036319.0 -0.07
FVB/NJ m 1728684.0 0.0   1   0.0 0.0 1728684.0, 1728684.0 -0.39
I/LnJ m 1523159.0 0.0   1   0.0 0.0 1523159.0, 1523159.0 -0.7
KK/HlJ m 1445894.0 0.0   1   0.0 0.0 1445894.0, 1445894.0 -0.82
LG/J m 1029487.0 0.0   1   0.0 0.0 1029487.0, 1029487.0 -1.45
LP/J m 2274238.0 0.0   1   0.0 0.0 2274238.0, 2274238.0 0.43
MA/MyJ m 1060133.0 0.0   1   0.0 0.0 1060133.0, 1060133.0 -1.4
NOD/ShiLtJ m 1507391.0 0.0   1   0.0 0.0 1507391.0, 1507391.0 -0.73
NON/ShiLtJ m 2430290.0 0.0   1   0.0 0.0 2430290.0, 2430290.0 0.67
NZW/LacJ m 1636976.0 0.0   1   0.0 0.0 1636976.0, 1636976.0 -0.53
PL/J m 1340182.0 0.0   1   0.0 0.0 1340182.0, 1340182.0 -0.98
RIIIS/J m 2683703.0 0.0   1   0.0 0.0 2683703.0, 2683703.0 1.05
SEA/GnJ m 1637869.0 0.0   1   0.0 0.0 1637869.0, 1637869.0 -0.53
SJL/J m 1952726.0 0.0   1   0.0 0.0 1952726.0, 1952726.0 -0.05
SM/J m 1825467.0 0.0   1   0.0 0.0 1825467.0, 1825467.0 -0.25
SWR/J m 1918718.0 0.0   1   0.0 0.0 1918718.0, 1918718.0 -0.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 3484357.25 551439.4744 4605017.094 2363697.406
AXB19b/PgnJ m 1353800.35 551439.4744 2474460.194 233140.506
AXB24/PgnJ m 1731250.85 551439.4744 2851910.694 610591.006
BALB/cJ m 1358742.5 450248.4454 2273757.431 443727.569
BXA16/PgnJ m 2013682.95 551439.4744 3134342.794 893023.106
BXD19/TyJ m 1402604.7 551439.4744 2523264.544 281944.856
BXD28/TyJ m 1847894.95 551439.4744 2968554.794 727235.106
BXH4/TyJ m 3059700.55 551439.4744 4180360.394 1939040.706
C3H/HeJ m 1665055.85 551439.4744 2785715.694 544396.006
C57BL/6J m 1703150.34 348760.9461 2411917.8579 994382.8221
CXB11/HiAJ m 2247787.7 551439.4744 3368447.544 1127127.856
CXB12/HiAJ m 2418160.75 551439.4744 3538820.594 1297500.906
CXB13/HiAJ m 3757502.4 450248.4454 4672517.331 2842487.469
CXB1/ByJ m 1579123.4333 450248.4454 2494138.3643 664108.5023
CXB2/ByJ m 3233152.4667 450248.4454 4148167.3977 2318137.5357
CXB3/ByJ m 2052447.4 551439.4744 3173107.244 931787.556
CXB4/ByJ m 1551890.9 551439.4744 2672550.744 431231.056
CXB6/ByJ m 2001191.4667 450248.4454 2916206.3977 1086176.5357
CXB7/ByJ m 2766568.15 551439.4744 3887227.994 1645908.306
CXB8/HiAJ m 2389608.0 450248.4454 3304622.931 1474593.069
CXB9/HiAJ m 1714232.7667 450248.4454 2629247.6977 799217.8357
DBA/2J m 1945005.75 389926.5917 2737431.9251 1152579.5749




  GWAS USING LINEAR MIXED MODELS