Project measure / variable:   HMDPpheno7   xylitol

ID, description, units MPD:50220   xylitol   liver xylitol (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno7 - liver xylitol (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means118741   None
Median of the strain means113548   None
SD of the strain means± 31504
Coefficient of variation (CV)0.265
Min–max range of strain means49651   –   249166   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 24572175434.9122 1170103592.1387 2.0334 0.0318
Residuals 34 19564899351.3433 575438216.216


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 103405.0 0.0   1   0.0 0.0 103405.0, 103405.0 -0.49
A/J m 105594.0 16862.0   2   11923.0 0.16 93671.0, 117517.0 -0.42
AKR/J m 90962.0 0.0   1   0.0 0.0 90962.0, 90962.0 -0.88
AXB10/PgnJ m 114021.0 0.0   1   0.0 0.0 114021.0, 114021.0 -0.15
AXB12/PgnJ m 76286.0 0.0   1   0.0 0.0 76286.0, 76286.0 -1.35
AXB13/PgnJ m 123417.0 0.0   1   0.0 0.0 123417.0, 123417.0 0.15
AXB15/PgnJ m 122666.0 0.0   1   0.0 0.0 122666.0, 122666.0 0.12
AXB19a/PgnJ m 155001.0 0.0   1   0.0 0.0 155001.0, 155001.0 1.15
AXB19b/PgnJ m 133531.0 130.0   2   91.7 0.000972 133439.0, 133623.0 0.47
AXB19/PgnJ m 119675.0 0.0   1   0.0 0.0 119675.0, 119675.0 0.03
AXB1/PgnJ m 120050.0 0.0   1   0.0 0.0 120050.0, 120050.0 0.04
AXB23/PgnJ m 102457.0 0.0   1   0.0 0.0 102457.0, 102457.0 -0.52
AXB24/PgnJ m 140436.0 25704.0   2   18175.0 0.183 122260.0, 158611.0 0.69
AXB2/PgnJ m 111978.0 0.0   1   0.0 0.0 111978.0, 111978.0 -0.21
AXB4/PgnJ m 137169.0 0.0   1   0.0 0.0 137169.0, 137169.0 0.58
AXB5/PgnJ m 101411.0 0.0   1   0.0 0.0 101411.0, 101411.0 -0.55
AXB6/PgnJ m 105972.0 0.0   1   0.0 0.0 105972.0, 105972.0 -0.41
AXB8/PgnJ m 249166.0 0.0   1   0.0 0.0 249166.0, 249166.0 4.14
BALB/cJ m 139182.0 15362.0   3 8869.0 0.11 121452.0, 148527.0 0.65
BTBR T+ Itpr3tf/J m 84793.0 0.0   1   0.0 0.0 84793.0, 84793.0 -1.08
BUB/BnJ m 121205.0 0.0   1   0.0 0.0 121205.0, 121205.0 0.08
BXA11/PgnJ m 160043.0 0.0   1   0.0 0.0 160043.0, 160043.0 1.31
BXA12/PgnJ m 147495.0 0.0   1   0.0 0.0 147495.0, 147495.0 0.91
BXA13/PgnJ m 107854.0 0.0   1   0.0 0.0 107854.0, 107854.0 -0.35
BXA14/PgnJ m 189285.0 0.0   1   0.0 0.0 189285.0, 189285.0 2.24
BXA16/PgnJ m 145574.0 6575.0   2   4649.0 0.0452 140925.0, 150223.0 0.85
BXA1/PgnJ m 130804.0 0.0   1   0.0 0.0 130804.0, 130804.0 0.38
BXA24/PgnJ m 149317.0 0.0   1   0.0 0.0 149317.0, 149317.0 0.97
BXA25/PgnJ m 99763.0 0.0   1   0.0 0.0 99763.0, 99763.0 -0.6
BXA26/PgnJ m 97072.0 0.0   1   0.0 0.0 97072.0, 97072.0 -0.69
BXA2/PgnJ m 142070.0 0.0   1   0.0 0.0 142070.0, 142070.0 0.74
BXA4/PgnJ m 69124.0 0.0   1   0.0 0.0 69124.0, 69124.0 -1.57
BXA7/PgnJ m 91546.0 0.0   1   0.0 0.0 91546.0, 91546.0 -0.86
BXA8/PgnJ m 149782.0 0.0   1   0.0 0.0 149782.0, 149782.0 0.99
BXD11/TyJ m 127723.0 0.0   1   0.0 0.0 127723.0, 127723.0 0.29
BXD12/TyJ m 108593.0 0.0   1   0.0 0.0 108593.0, 108593.0 -0.32
BXD13/TyJ m 114442.0 0.0   1   0.0 0.0 114442.0, 114442.0 -0.14
BXD14/TyJ m 109426.0 0.0   1   0.0 0.0 109426.0, 109426.0 -0.3
BXD15/TyJ m 97754.0 0.0   1   0.0 0.0 97754.0, 97754.0 -0.67
BXD18/TyJ m 99851.0 0.0   1   0.0 0.0 99851.0, 99851.0 -0.6
BXD19/TyJ m 112938.0 20194.0   2   14279.0 0.179 98659.0, 127218.0 -0.18
BXD1/TyJ m 113546.0 0.0   1   0.0 0.0 113546.0, 113546.0 -0.16
BXD20/TyJ m 94707.0 0.0   1   0.0 0.0 94707.0, 94707.0 -0.76
BXD21/TyJ m 92949.0 0.0   1   0.0 0.0 92949.0, 92949.0 -0.82
BXD22/TyJ m 108165.0 0.0   1   0.0 0.0 108165.0, 108165.0 -0.34
BXD24/TyJ m 123537.0 0.0   1   0.0 0.0 123537.0, 123537.0 0.15
BXD24/TyJ-Cep290rd16/J m 91822.0 0.0   1   0.0 0.0 91822.0, 91822.0 -0.85
BXD28/TyJ m 115627.0 1053.0   2   745.0 0.00911 114882.0, 116372.0 -0.1
BXD29-Tlr4lps-2J/J m 96512.0 0.0   1   0.0 0.0 96512.0, 96512.0 -0.71
BXD2/TyJ m 60819.0 0.0   1   0.0 0.0 60819.0, 60819.0 -1.84
BXD32/TyJ m 107429.0 0.0   1   0.0 0.0 107429.0, 107429.0 -0.36
BXD33/TyJ m 93077.0 0.0   1   0.0 0.0 93077.0, 93077.0 -0.81
BXD34/TyJ m 93446.0 0.0   1   0.0 0.0 93446.0, 93446.0 -0.8
BXD36/TyJ m 86847.0 0.0   1   0.0 0.0 86847.0, 86847.0 -1.01
BXD38/TyJ m 219429.0 0.0   1   0.0 0.0 219429.0, 219429.0 3.2
BXD39/TyJ m 110131.0 0.0   1   0.0 0.0 110131.0, 110131.0 -0.27
BXD40/TyJ m 106939.0 0.0   1   0.0 0.0 106939.0, 106939.0 -0.37
BXD42/TyJ m 84807.0 0.0   1   0.0 0.0 84807.0, 84807.0 -1.08
BXD5/TyJ m 170623.0 0.0   1   0.0 0.0 170623.0, 170623.0 1.65
BXD6/TyJ m 117762.0 0.0   1   0.0 0.0 117762.0, 117762.0 -0.03
BXD8/TyJ m 72503.0 0.0   1   0.0 0.0 72503.0, 72503.0 -1.47
BXD9/TyJ m 93408.0 0.0   1   0.0 0.0 93408.0, 93408.0 -0.8
BXH10/TyJ m 77662.0 0.0   1   0.0 0.0 77662.0, 77662.0 -1.3
BXH19/TyJ m 126085.0 0.0   1   0.0 0.0 126085.0, 126085.0 0.23
BXH20/KccJ m 143143.0 0.0   1   0.0 0.0 143143.0, 143143.0 0.77
BXH22/KccJ m 89939.0 0.0   1   0.0 0.0 89939.0, 89939.0 -0.91
BXH2/TyJ m 98082.0 0.0   1   0.0 0.0 98082.0, 98082.0 -0.66
BXH4/TyJ m 115123.0 9722.0   2   6874.0 0.0844 108249.0, 121997.0 -0.11
BXH6/TyJ m 133160.0 0.0   1   0.0 0.0 133160.0, 133160.0 0.46
BXH7/TyJ m 78576.0 0.0   1   0.0 0.0 78576.0, 78576.0 -1.27
BXH8/TyJ m 140455.0 0.0   1   0.0 0.0 140455.0, 140455.0 0.69
BXH9/TyJ m 118377.0 0.0   1   0.0 0.0 118377.0, 118377.0 -0.01
C3H/HeJ m 105270.0 15310.0   2   10826.0 0.145 94445.0, 116096.0 -0.43
C57BL/6J m 153171.0 38268.0   5 17114.0 0.25 103279.0, 206894.0 1.09
C57L/J m 112250.0 0.0   1   0.0 0.0 112250.0, 112250.0 -0.21
C58/J m 92948.0 0.0   1   0.0 0.0 92948.0, 92948.0 -0.82
CAST/EiJ m 87339.0 0.0   1   0.0 0.0 87339.0, 87339.0 -1.0
CBA/J m 91529.0 0.0   1   0.0 0.0 91529.0, 91529.0 -0.86
CE/J m 89316.0 0.0   1   0.0 0.0 89316.0, 89316.0 -0.93
CXB11/HiAJ m 111848.0 9581.0   2   6775.0 0.0857 105072.0, 118623.0 -0.22
CXB12/HiAJ m 105928.0 11505.0   2   8135.0 0.109 97793.0, 114064.0 -0.41
CXB13/HiAJ m 157530.0 30144.0   3 17404.0 0.191 130827.0, 190217.0 1.23
CXB1/ByJ m 121846.0 6668.0   3 3850.0 0.0547 116465.0, 129306.0 0.1
CXB2/ByJ m 130734.0 27775.0   3 16036.0 0.212 103515.0, 159033.0 0.38
CXB3/ByJ m 158690.0 3759.0   2   2658.0 0.0237 156032.0, 161349.0 1.27
CXB4/ByJ m 152420.0 37899.0   2   26798.0 0.249 125621.0, 179218.0 1.07
CXB6/ByJ m 154535.0 14401.0   3 8315.0 0.0932 141154.0, 169777.0 1.14
CXB7/ByJ m 113637.0 13523.0   2   9562.0 0.119 104075.0, 123200.0 -0.16
CXB8/HiAJ m 154984.0 28681.0   3 16559.0 0.185 124109.0, 180796.0 1.15
CXB9/HiAJ m 126213.0 37373.0   3 21577.0 0.296 85723.0, 159387.0 0.24
DBA/2J m 91650.0 21204.0   4 10602.0 0.231 73171.0, 121052.0 -0.86
FVB/NJ m 49651.0 0.0   1   0.0 0.0 49651.0, 49651.0 -2.19
I/LnJ m 171736.0 0.0   1   0.0 0.0 171736.0, 171736.0 1.68
KK/HlJ m 136316.0 0.0   1   0.0 0.0 136316.0, 136316.0 0.56
LG/J m 113551.0 0.0   1   0.0 0.0 113551.0, 113551.0 -0.16
LP/J m 90517.0 0.0   1   0.0 0.0 90517.0, 90517.0 -0.9
MA/MyJ m 177361.0 0.0   1   0.0 0.0 177361.0, 177361.0 1.86
NOD/ShiLtJ m 122619.0 0.0   1   0.0 0.0 122619.0, 122619.0 0.12
NON/ShiLtJ m 167992.0 0.0   1   0.0 0.0 167992.0, 167992.0 1.56
NZW/LacJ m 120044.0 0.0   1   0.0 0.0 120044.0, 120044.0 0.04
PL/J m 121710.0 0.0   1   0.0 0.0 121710.0, 121710.0 0.09
RIIIS/J m 138323.0 0.0   1   0.0 0.0 138323.0, 138323.0 0.62
SEA/GnJ m 93810.0 0.0   1   0.0 0.0 93810.0, 93810.0 -0.79
SJL/J m 109617.0 0.0   1   0.0 0.0 109617.0, 109617.0 -0.29
SM/J m 100975.0 0.0   1   0.0 0.0 100975.0, 100975.0 -0.56
SWR/J m 176919.0 0.0   1   0.0 0.0 176919.0, 176919.0 1.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 105593.9 16962.2849 140065.4103 71122.3897
AXB19b/PgnJ m 133531.05 16962.2849 168002.5603 99059.5397
AXB24/PgnJ m 140435.6 16962.2849 174907.1103 105964.0897
BALB/cJ m 139181.6 13849.6476 167327.4703 111035.7297
BXA16/PgnJ m 145574.25 16962.2849 180045.7603 111102.7397
BXD19/TyJ m 112938.1 16962.2849 147409.6103 78466.5897
BXD28/TyJ m 115626.8 16962.2849 150098.3103 81155.2897
BXH4/TyJ m 115122.95 16962.2849 149594.4603 80651.4397
C3H/HeJ m 105270.4 16962.2849 139741.9103 70798.8897
C57BL/6J m 153171.4 10727.8909 174973.0974 131369.7026
CXB11/HiAJ m 111847.5 16962.2849 146319.0103 77375.9897
CXB12/HiAJ m 105928.4 16962.2849 140399.9103 71456.8897
CXB13/HiAJ m 157529.6667 13849.6476 185675.537 129383.7964
CXB1/ByJ m 121846.2667 13849.6476 149992.137 93700.3964
CXB2/ByJ m 130733.7333 13849.6476 158879.6036 102587.863
CXB3/ByJ m 158690.45 16962.2849 193161.9603 124218.9397
CXB4/ByJ m 152419.7 16962.2849 186891.2103 117948.1897
CXB6/ByJ m 154535.1333 13849.6476 182681.0036 126389.263
CXB7/ByJ m 113637.3 16962.2849 148108.8103 79165.7897
CXB8/HiAJ m 154984.4 13849.6476 183130.2703 126838.5297
CXB9/HiAJ m 126213.2333 13849.6476 154359.1036 98067.363
DBA/2J m 91650.35 11994.1467 116025.3887 67275.3113




  GWAS USING LINEAR MIXED MODELS