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Project measure / variable:   Rice1   Krtap13_1

ID, description, units MPD:49232   Krtap13_1   KRTAP13-1, spectral counts, hair proteomics    
Data set, strains Rice1   inbred   11 strains     sex: both     age: 10-19wks
Procedure proteomic profiling
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rice1 - KRTAP13-1, spectral counts, hair proteomics



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means44.2   None 50.1   None
Median of the strain means47.5   None 57.2   None
SD of the strain means± 12.3 ± 16.3
Coefficient of variation (CV)0.278 0.325
Min–max range of strain means23.0   –   62.1   None 16.5   –   70.4   None
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 386.4226 386.4226 6.4037 0.019
strain 10 6862.3753 686.2375 11.3721 < 0.0001
sex:strain 10 1468.7888 146.8789 2.434 0.0394
Residuals 22 1327.5676 60.344


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C3H/HeJ f 26.5 4.95   2   3.5 0.187 23.0, 30.0 -1.44
C3H/HeJ m 16.5 0.707   2   0.5 0.0429 16.0, 17.0 -2.07
C57BL/6J f 38.9 1.62   2   1.14 0.0416 37.7, 40.0 -0.43
C57BL/6J m 40.6 0.53   2   0.375 0.0131 40.2, 41.0 -0.59
CAST/EiJ f 23.0 0.0   2   0.0 0.0 23.0, 23.0 -1.73
CAST/EiJ m 30.0 1.41   2   1.0 0.0471 29.0, 31.0 -1.24
DBA/1J f 55.2 2.61   2   1.84 0.0472 53.3, 57.0 0.89
DBA/1J m 42.2 0.512   2   0.362 0.0121 41.8, 42.5 -0.49
MRL/MpJ f 54.6 11.9   2   8.44 0.218 46.2, 63.1 0.84
MRL/MpJ m 61.8 8.83   2   6.24 0.143 55.6, 68.1 0.72
MRL/MpJ Faslpr-Foxq1sa-J/J f 36.6 1.76   2   1.24 0.048 35.3, 37.8 -0.62
MRL/MpJ Faslpr-Foxq1sa-J/J m 50.9 1.02   2   0.724 0.0201 50.2, 51.6 0.05
NOD/ShiLtJ f 52.8 11.2   2   7.93 0.212 44.8, 60.7 0.7
NOD/ShiLtJ m 58.7 12.1   2   8.56 0.206 50.2, 67.3 0.53
NZW/LacJ f 40.9 3.48   2   2.46 0.0851 38.4, 43.3 -0.27
NZW/LacJ m 65.4 4.67   2   3.3 0.0714 62.1, 68.7 0.94
SB/LeJ f 62.1 4.44   2   3.14 0.0714 59.0, 65.2 1.45
SB/LeJ m 57.2 8.11   2   5.74 0.142 51.5, 63.0 0.43
STOCK a/a Tmem79ma Flgft/J f 47.5 20.7   2   14.6 0.436 32.8, 62.1 0.27
STOCK a/a Tmem79ma Flgft/J m 70.4 7.17   2   5.07 0.102 65.4, 75.5 1.25
WSB/EiJ f 48.3 13.8   2   9.74 0.285 38.6, 58.1 0.33
WSB/EiJ m 57.7 2.14   2   1.51 0.037 56.2, 59.2 0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ f 26.5 5.4929 37.8916 15.1084
C3H/HeJ m 16.5 5.4929 27.8916 5.1084
C57BL/6J f 38.857 5.4929 50.2486 27.4654
C57BL/6J m 40.625 5.4929 52.0166 29.2334
CAST/EiJ f 23.0 5.4929 34.3916 11.6084
CAST/EiJ m 30.0 5.4929 41.3916 18.6084
DBA/1J f 55.1755 5.4929 66.5671 43.7839
DBA/1J m 42.162 5.4929 53.5536 30.7704
MRL/MpJ f 54.641 5.4929 66.0326 43.2494
MRL/MpJ m 61.8325 5.4929 73.2241 50.4409
MRL/MpJ Faslpr-Foxq1sa-J/J f 36.5755 5.4929 47.9671 25.1839
MRL/MpJ Faslpr-Foxq1sa-J/J m 50.899 5.4929 62.2906 39.5074
NOD/ShiLtJ f 52.767 5.4929 64.1586 41.3754
NOD/ShiLtJ m 58.736 5.4929 70.1276 47.3444
NZW/LacJ f 40.8585 5.4929 52.2501 29.4669
NZW/LacJ m 65.404 5.4929 76.7956 54.0124
SB/LeJ f 62.112 5.4929 73.5036 50.7204
SB/LeJ m 57.2135 5.4929 68.6051 45.8219
STOCK a/a Tmem79ma Flgft/J f 47.4605 5.4929 58.8521 36.0689
STOCK a/a Tmem79ma Flgft/J m 70.4255 5.4929 81.8171 59.0339
WSB/EiJ f 48.315 5.4929 59.7066 36.9234
WSB/EiJ m 57.6615 5.4929 69.0531 46.2699


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
C3H/HeJ both 21.5 3.8841 29.5551 13.4449
C57BL/6J both 39.741 3.8841 47.7961 31.6859
CAST/EiJ both 26.5 3.8841 34.5551 18.4449
DBA/1J both 48.6687 3.8841 56.7238 40.6137
MRL/MpJ both 58.2367 3.8841 66.2918 50.1817
MRL/MpJ Faslpr-Foxq1sa-J/J both 43.7372 3.8841 51.7923 35.6822
NOD/ShiLtJ both 55.7515 3.8841 63.8066 47.6964
NZW/LacJ both 53.1312 3.8841 61.1863 45.0762
SB/LeJ both 59.6628 3.8841 67.7178 51.6077
STOCK a/a Tmem79ma Flgft/J both 58.943 3.8841 66.9981 50.8879
WSB/EiJ both 52.9882 3.8841 61.0433 44.9332




  GWAS USING LINEAR MIXED MODELS