Project measure / variable:   Boon1   survival_med

ID, description, units MPD:46922   survival_med   survival (days to death, max 30)   [d]  dose group: medium  
influenza A (H5N1) virus study
Data set, strains Boon1   inbred   22 strains     sex: f     age: 6-9wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Boon1 - survival (days to death, max 30) dose group: medium



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means21.2   d
Median of the strain means24.8   d
SD of the strain means± 9.09
Coefficient of variation (CV)0.430
Min–max range of strain means7.88   –   30.0   d
Mean sample size per strain10.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 25739.8192 1225.7057 37.5404 < 0.0001
Residuals 309 10088.9361 32.6503


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.0 1.13   12 0.326 0.113 9.0, 12.0 -1.23
129X1/SvJ f 8.8 0.447   5 0.2 0.0508 8.0, 9.0 -1.36
A/HeJ f 18.6 9.86   10 3.12 0.53 10.0, 30.0 -0.28
A/J f 9.8 1.32   10 0.416 0.134 8.0, 12.0 -1.25
AKR/J f 30.0 0.0   5 0.0 0.0 30.0, 30.0 0.97
B10.D2-Hc0 f 20.3 9.58   15 2.47 0.473 8.0, 30.0 -0.09
B10.D2-Hc1 f 27.8 6.67   9 2.22 0.24 10.0, 30.0 0.73
B6D2F1/J f 27.3 7.04   15 1.82 0.257 10.0, 30.0 0.68
BALB/cByJ f 30.0 0.0   10 0.0 0.0 30.0, 30.0 0.97
BALB/cJ f 30.0 0.0   5 0.0 0.0 30.0, 30.0 0.97
BTBR T+ Itpr3tf/J f 7.88 1.36   8 0.479 0.172 7.0, 11.0 -1.46
C3H/HeJ f 23.9 9.83   10 3.11 0.411 9.0, 30.0 0.3
C57BL/6J f 27.7 6.44   110 0.614 0.233 10.0, 30.0 0.72
DBA/2J f 7.96 0.902   55 0.122 0.113 6.0, 11.0 -1.45
FVB/NJ f 28.0 6.32   10 2.0 0.226 10.0, 30.0 0.75
KK/HlJ f 25.2 9.5   4 4.75 0.376 11.0, 30.0 0.44
LP/J f 8.89 1.05   9 0.351 0.119 8.0, 11.0 -1.35
MRL/MpJ f 30.0 0.0   5 0.0 0.0 30.0, 30.0 0.97
NOD/ShiLtJ f 30.0 0.0   5 0.0 0.0 30.0, 30.0 0.97
NZB/BlNJ f 9.0 0.632   6 0.258 0.0703 8.0, 10.0 -1.34
NZW/LacJ f 24.3 9.21   10 2.91 0.379 10.0, 30.0 0.35
SM/J f 30.0 0.0   3 0.0 0.0 30.0, 30.0 0.97


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.0 1.6495 13.2457 6.7543
129X1/SvJ f 8.8 2.5554 13.8282 3.7718
A/HeJ f 18.6 1.8069 22.1555 15.0445
A/J f 9.8 1.8069 13.3555 6.2445
AKR/J f 30.0 2.5554 35.0282 24.9718
B10.D2-Hc0 f 20.2667 1.4754 23.1697 17.3636
B10.D2-Hc1 f 27.7778 1.9047 31.5256 24.03
B6D2F1/J f 27.3333 1.4754 30.2364 24.4303
BALB/cByJ f 30.0 1.8069 33.5555 26.4445
BALB/cJ f 30.0 2.5554 35.0282 24.9718
BTBR T+ Itpr3tf/J f 7.875 2.0202 11.8501 3.8999
C3H/HeJ f 23.9 1.8069 27.4555 20.3445
C57BL/6J f 27.6545 0.5448 28.7266 26.5825
DBA/2J f 7.9636 0.7705 9.4797 6.4476
FVB/NJ f 28.0 1.8069 31.5555 24.4445
KK/HlJ f 25.25 2.857 30.8717 19.6283
LP/J f 8.8889 1.9047 12.6367 5.1411
MRL/MpJ f 30.0 2.5554 35.0282 24.9718
NOD/ShiLtJ f 30.0 2.5554 35.0282 24.9718
NZB/BlNJ f 9.0 2.3327 13.5901 4.4099
NZW/LacJ f 24.3 1.8069 27.8555 20.7445
SM/J f 30.0 3.299 36.4914 23.5086




  GWAS USING LINEAR MIXED MODELS