Project measure / variable:   HMDPpheno2   TG

ID, description, units MPD:46406   TG   triglycerides (plasma TG, 16h fast)   [mg/dL]  
Data set, strains HMDPpheno2   HMDP w/par   99 strains     sex: m     age: 16wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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HMDPpheno2 - triglycerides (plasma TG, 16h fast)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested99 strains
Mean of the strain means56.4   mg/dL
Median of the strain means48.8   mg/dL
SD of the strain means± 34.3
Coefficient of variation (CV)0.607
Min–max range of strain means13.2   –   195   mg/dL
Mean sample size per strain6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 97 1003042.3199 10340.6425 13.3096 < 0.0001
Residuals 585 454505.5981 776.9326


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 38.2 40.5   10 12.8 1.06 12.0, 148.0 -0.53
A/J m 52.2 18.7   8 6.62 0.358 35.0, 90.0 -0.12
AKR/J m 73.8 24.0   10 7.6 0.325 43.0, 112.0 0.51
AXB10/PgnJ m 53.6 14.5   5 6.47 0.27 32.0, 71.0 -0.08
AXB12/PgnJ m 23.0 8.81   6 3.6 0.383 11.0, 34.0 -0.98
AXB13/PgnJ m 22.3 8.89   6 3.63 0.398 13.0, 38.0 -1.0
AXB15/PgnJ m 23.5 8.34   6 3.4 0.355 12.0, 35.0 -0.96
AXB19a/PgnJ m 40.0 18.9   5 8.43 0.471 14.0, 55.0 -0.48
AXB19b/PgnJ m 23.0 12.9   8 4.57 0.563 9.0, 43.0 -0.98
AXB19/PgnJ m 28.3 16.7   6 6.81 0.589 8.0, 54.0 -0.82
AXB1/PgnJ m 29.2 14.5   6 5.92 0.497 10.0, 43.0 -0.79
AXB23/PgnJ m 35.7 11.5   6 4.7 0.322 16.0, 46.0 -0.6
AXB24/PgnJ m 29.6 15.9   5 7.1 0.537 14.0, 52.0 -0.78
AXB2/PgnJ m 60.8 30.6   6 12.5 0.503 19.0, 95.0 0.13
AXB4/PgnJ m 36.2 13.2   6 5.37 0.364 16.0, 50.0 -0.59
AXB5/PgnJ m 17.0 1.41   4 0.707 0.0832 16.0, 19.0 -1.15
AXB6/PgnJ m 20.5 8.68   8 3.07 0.424 12.0, 35.0 -1.05
AXB8/PgnJ m 72.6 16.3   5 7.31 0.225 54.0, 99.0 0.47
B6cC3-1/KccJ m 80.2 23.9   6 9.74 0.298 53.0, 117.0 0.69
BALB/cJ m 44.0 17.5   10 5.55 0.399 15.0, 62.0 -0.36
BTBR T+ Itpr3tf/J m 71.4 20.6   10 6.51 0.288 52.0, 118.0 0.44
BUB/BnJ m 60.9 8.4   9 2.8 0.138 48.0, 73.0 0.13
BXA11/PgnJ m 60.3 14.9   6 6.08 0.247 44.0, 81.0 0.11
BXA12/PgnJ m 65.8 8.66   4 4.33 0.132 58.0, 77.0 0.27
BXA13/PgnJ m 57.5 18.0   6 7.33 0.312 35.0, 81.0 0.03
BXA14/PgnJ m 38.2 13.9   6 5.69 0.365 19.0, 61.0 -0.53
BXA16/PgnJ m 78.1 23.1   7 8.72 0.295 51.0, 113.0 0.63
BXA1/PgnJ m 41.0 33.9   2   24.0 0.828 17.0, 65.0 -0.45
BXA24/PgnJ m 53.0 13.3   6 5.43 0.251 29.0, 64.0 -0.1
BXA25/PgnJ m 50.0 21.4   6 8.72 0.427 23.0, 83.0 -0.19
BXA26/PgnJ m 21.5 8.73   6 3.57 0.406 13.0, 36.0 -1.02
BXA2/PgnJ m 48.7 20.6   6 8.41 0.423 22.0, 82.0 -0.23
BXA4/PgnJ m 34.2 13.8   5 6.15 0.402 25.0, 58.0 -0.65
BXA7/PgnJ m 42.7 11.9   6 4.86 0.279 29.0, 62.0 -0.4
BXA8/PgnJ m 37.7 15.7   6 6.42 0.418 24.0, 65.0 -0.55
BXD11/TyJ m 52.0 26.1   5 11.7 0.501 21.0, 79.0 -0.13
BXD12/TyJ m 48.8 26.3   6 10.7 0.538 25.0, 94.0 -0.22
BXD13/TyJ m 42.3 13.6   6 5.57 0.322 24.0, 61.0 -0.41
BXD14/TyJ m 66.8 17.9   6 7.33 0.269 38.0, 90.0 0.3
BXD15/TyJ m 24.2 5.68   4 2.84 0.234 16.0, 29.0 -0.94
BXD16/TyJ m 81.8 12.5   4 6.25 0.153 72.0, 100.0 0.74
BXD18/TyJ m 18.0 7.07   2   5.0 0.393 13.0, 23.0 -1.12
BXD19/TyJ m 85.4 32.2   8 11.4 0.377 41.0, 147.0 0.85
BXD1/TyJ m 19.8 6.29   4 3.15 0.319 11.0, 26.0 -1.07
BXD20/TyJ m 17.0 5.62   6 2.29 0.331 7.0, 23.0 -1.15
BXD21/TyJ m 60.8 28.2   4 14.1 0.464 38.0, 101.0 0.13
BXD22/TyJ m 22.0 0.0   1   0.0 0.0 22.0, 22.0 -1.0
BXD24/TyJ-Cep290rd16/J m 34.0 6.29   6 2.57 0.185 28.0, 46.0 -0.65
BXD27/TyJ m 70.2 45.0   4 22.5 0.641 8.0, 108.0 0.4
BXD28/TyJ m 40.6 15.1   5 6.73 0.371 26.0, 61.0 -0.46
BXD29-Tlr4lps-2J/J m 45.2 23.7   6 9.66 0.524 20.0, 88.0 -0.33
BXD2/TyJ m 84.8 39.1   4 19.5 0.461 54.0, 138.0 0.83
BXD31/TyJ m 44.2 9.78   4 4.89 0.221 35.0, 58.0 -0.36
BXD32/TyJ m 78.8 22.3   4 11.1 0.283 60.0, 111.0 0.65
BXD33/TyJ m 13.2 3.06   6 1.25 0.232 10.0, 17.0 -1.26
BXD34/TyJ m 50.7 12.4   6 5.08 0.245 29.0, 62.0 -0.17
BXD36/TyJ m 60.8 16.2   4 8.11 0.267 39.0, 78.0 0.13
BXD38/TyJ m 24.8 5.74   4 2.87 0.232 18.0, 32.0 -0.92
BXD39/TyJ m 38.2 8.73   5 3.9 0.229 24.0, 48.0 -0.53
BXD40/TyJ m 29.0 6.0   6 2.45 0.207 21.0, 38.0 -0.8
BXD42/TyJ m 80.0 34.8   6 14.2 0.435 30.0, 120.0 0.69
BXD5/TyJ m 44.2 5.12   6 2.09 0.116 37.0, 51.0 -0.36
BXD6/TyJ m 36.3 6.19   6 2.53 0.17 28.0, 41.0 -0.59
BXD8/TyJ m 37.8 9.7   6 3.96 0.256 24.0, 53.0 -0.54
BXD9/TyJ m 82.7 12.8   6 5.21 0.154 68.0, 102.0 0.77
BXH10/TyJ m 34.5 21.8   6 8.89 0.631 15.0, 74.0 -0.64
BXH14/TyJ m 195.0 95.3   9 31.8 0.488 48.0, 319.0 4.04
BXH19/TyJ m 169.0 64.7   17 15.7 0.382 81.0, 296.0 3.28
BXH20/KccJ m 56.2 17.5   8 6.18 0.311 32.0, 88.0 -0.01
BXH22/KccJ m 34.8 12.6   10 3.98 0.362 20.0, 56.0 -0.63
BXH2/TyJ m 39.2 12.2   9 4.08 0.312 25.0, 65.0 -0.5
BXH4/TyJ m 65.5 34.7   11 10.5 0.53 18.0, 114.0 0.26
BXH6/TyJ m 82.7 47.1   10 14.9 0.57 26.0, 160.0 0.77
BXH7/TyJ m 30.0 18.9   9 6.29 0.629 8.0, 55.0 -0.77
BXH8/TyJ m 78.5 40.1   11 12.1 0.511 27.0, 152.0 0.64
BXH9/TyJ m 101.0 57.9   8 20.5 0.572 11.0, 187.0 1.3
C3H/HeJ m 67.5 23.5   10 7.42 0.348 31.0, 103.0 0.32
C57BL/6J m 58.6 21.5   11 6.48 0.367 22.0, 85.0 0.06
C57L/J m 109.0 33.1   10 10.5 0.304 22.0, 136.0 1.53
C58/J m 21.1 10.5   10 3.31 0.496 2.0, 35.0 -1.03
CBA/J m 108.0 31.1   10 9.83 0.289 66.0, 163.0 1.5
CE/J m 51.6 11.7   9 3.89 0.226 39.0, 79.0 -0.14
DBA/2J m 79.2 14.6   10 4.63 0.185 53.0, 103.0 0.66
FVB/NJ m 96.0 38.6   5 17.3 0.402 50.0, 143.0 1.15
I/LnJ m 23.7 11.6   9 3.87 0.491 6.0, 45.0 -0.96
KK/HlJ m 130.0 25.4   8 8.97 0.195 102.0, 174.0 2.15
LG/J m 117.0 37.6   7 14.2 0.322 66.0, 159.0 1.77
LP/J m 32.4 13.7   10 4.34 0.423 20.0, 63.0 -0.7
MA/MyJ m 39.0 14.7   6 6.0 0.377 23.0, 62.0 -0.51
NOD/ShiLtJ m 80.7 33.9   10 10.7 0.42 52.0, 150.0 0.71
NON/ShiLtJ m 179.0 49.4   11 14.9 0.275 116.0, 297.0 3.58
NZB/BlNJ m 124.0 24.0   7 9.08 0.194 101.0, 166.0 1.97
NZW/LacJ m 98.0 16.8   10 5.32 0.172 82.0, 127.0 1.21
PL/J m 59.0 15.4   8 5.45 0.261 47.0, 83.0 0.07
RIIIS/J m 42.1 17.7   10 5.59 0.42 15.0, 66.0 -0.42
SEA/GnJ m 29.4 16.5   11 4.98 0.562 13.0, 72.0 -0.79
SJL/J m 20.5 0.707   2   0.5 0.0345 20.0, 21.0 -1.05
SM/J m 82.5 42.0   10 13.3 0.509 11.0, 132.0 0.76
SWR/J m 52.8 23.1   9 7.7 0.438 19.0, 85.0 -0.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 38.2 8.8144 55.5117 20.8883
A/J m 52.25 9.8548 71.605 32.895
AKR/J m 73.8 8.8144 91.1117 56.4883
AXB10/PgnJ m 53.6 12.4654 78.0824 29.1176
AXB12/PgnJ m 23.0 11.3793 45.3493 0.6507
AXB13/PgnJ m 22.3333 11.3793 44.6826 0.0
AXB15/PgnJ m 23.5 11.3793 45.8493 1.1507
AXB19a/PgnJ m 40.0 12.4654 64.4824 15.5176
AXB19b/PgnJ m 23.0 9.8548 42.355 3.645
AXB19/PgnJ m 28.3333 11.3793 50.6826 5.984
AXB1/PgnJ m 29.1667 11.3793 51.516 6.8174
AXB23/PgnJ m 35.6667 11.3793 58.016 13.3174
AXB24/PgnJ m 29.6 12.4654 54.0824 5.1176
AXB2/PgnJ m 60.8333 11.3793 83.1826 38.484
AXB4/PgnJ m 36.1667 11.3793 58.516 13.8174
AXB5/PgnJ m 17.0 13.9368 44.3722 0.0
AXB6/PgnJ m 20.5 9.8548 39.855 1.145
AXB8/PgnJ m 72.6 12.4654 97.0824 48.1176
B6cC3-1/KccJ m 80.1667 11.3793 102.516 57.8174
BALB/cJ m 44.0 8.8144 61.3117 26.6883
BTBR T+ Itpr3tf/J m 71.4 8.8144 88.7117 54.0883
BUB/BnJ m 60.8889 9.2912 79.137 42.6408
BXA11/PgnJ m 60.3333 11.3793 82.6826 37.984
BXA12/PgnJ m 65.75 13.9368 93.1222 38.3778
BXA13/PgnJ m 57.5 11.3793 79.8493 35.1507
BXA14/PgnJ m 38.1667 11.3793 60.516 15.8174
BXA16/PgnJ m 78.1429 10.5352 98.8343 57.4514
BXA1/PgnJ m 41.0 19.7095 79.7101 2.2899
BXA24/PgnJ m 53.0 11.3793 75.3493 30.6507
BXA25/PgnJ m 50.0 11.3793 72.3493 27.6507
BXA26/PgnJ m 21.5 11.3793 43.8493 0.0
BXA2/PgnJ m 48.6667 11.3793 71.016 26.3174
BXA4/PgnJ m 34.2 12.4654 58.6824 9.7176
BXA7/PgnJ m 42.6667 11.3793 65.016 20.3174
BXA8/PgnJ m 37.6667 11.3793 60.016 15.3174
BXD11/TyJ m 52.0 12.4654 76.4824 27.5176
BXD12/TyJ m 48.8333 11.3793 71.1826 26.484
BXD13/TyJ m 42.3333 11.3793 64.6826 19.984
BXD14/TyJ m 66.8333 11.3793 89.1826 44.484
BXD15/TyJ m 24.25 13.9368 51.6222 0.0
BXD16/TyJ m 81.75 13.9368 109.1222 54.3778
BXD18/TyJ m 18.0 19.7095 56.7101 0.0
BXD19/TyJ m 85.375 9.8548 104.73 66.02
BXD1/TyJ m 19.75 13.9368 47.1222 0.0
BXD20/TyJ m 17.0 11.3793 39.3493 0.0
BXD21/TyJ m 60.75 13.9368 88.1222 33.3778
BXD24/TyJ-Cep290rd16/J m 34.0 11.3793 56.3493 11.6507
BXD27/TyJ m 70.25 13.9368 97.6222 42.8778
BXD28/TyJ m 40.6 12.4654 65.0824 16.1176
BXD29-Tlr4lps-2J/J m 45.1667 11.3793 67.516 22.8174
BXD2/TyJ m 84.75 13.9368 112.1222 57.3778
BXD31/TyJ m 44.25 13.9368 71.6222 16.8778
BXD32/TyJ m 78.75 13.9368 106.1222 51.3778
BXD33/TyJ m 13.1667 11.3793 35.516 0.0
BXD34/TyJ m 50.6667 11.3793 73.016 28.3174
BXD36/TyJ m 60.75 13.9368 88.1222 33.3778
BXD38/TyJ m 24.75 13.9368 52.1222 0.0
BXD39/TyJ m 38.2 12.4654 62.6824 13.7176
BXD40/TyJ m 29.0 11.3793 51.3493 6.6507
BXD42/TyJ m 80.0 11.3793 102.3493 57.6507
BXD5/TyJ m 44.1667 11.3793 66.516 21.8174
BXD6/TyJ m 36.3333 11.3793 58.6826 13.984
BXD8/TyJ m 37.8333 11.3793 60.1826 15.484
BXD9/TyJ m 82.6667 11.3793 105.016 60.3174
BXH10/TyJ m 34.5 11.3793 56.8493 12.1507
BXH14/TyJ m 195.4444 9.2912 213.6926 177.1963
BXH19/TyJ m 169.2941 6.7603 182.5716 156.0167
BXH20/KccJ m 56.25 9.8548 75.605 36.895
BXH22/KccJ m 34.8 8.8144 52.1117 17.4883
BXH2/TyJ m 39.2222 9.2912 57.4703 20.9741
BXH4/TyJ m 65.4545 8.4042 81.9606 48.9485
BXH6/TyJ m 82.7 8.8144 100.0117 65.3883
BXH7/TyJ m 30.0 9.2912 48.2481 11.7519
BXH8/TyJ m 78.4545 8.4042 94.9606 61.9485
BXH9/TyJ m 101.25 9.8548 120.605 81.895
C3H/HeJ m 67.5 8.8144 84.8117 50.1883
C57BL/6J m 58.6364 8.4042 75.1424 42.1303
C57L/J m 109.0 8.8144 126.3117 91.6883
C58/J m 21.1 8.8144 38.4117 3.7883
CBA/J m 107.7 8.8144 125.0117 90.3883
CE/J m 51.5556 9.2912 69.8037 33.3074
DBA/2J m 79.2 8.8144 96.5117 61.8883
FVB/NJ m 96.0 12.4654 120.4824 71.5176
I/LnJ m 23.6667 9.2912 41.9148 5.4186
KK/HlJ m 129.875 9.8548 149.23 110.52
LG/J m 116.7143 10.5352 137.4057 96.0229
LP/J m 32.4 8.8144 49.7117 15.0883
MA/MyJ m 39.0 11.3793 61.3493 16.6507
NOD/ShiLtJ m 80.7 8.8144 98.0117 63.3883
NON/ShiLtJ m 179.3636 8.4042 195.8697 162.8576
NZB/BlNJ m 123.5714 10.5352 144.2628 102.88
NZW/LacJ m 98.0 8.8144 115.3117 80.6883
PL/J m 59.0 9.8548 78.355 39.645
RIIIS/J m 42.1 8.8144 59.4117 24.7883
SEA/GnJ m 29.3636 8.4042 45.8697 12.8576
SJL/J m 20.5 19.7095 59.2101 0.0
SM/J m 82.5 8.8144 99.8117 65.1883
SWR/J m 52.7778 9.2912 71.0259 34.5297




  GWAS USING LINEAR MIXED MODELS