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Project measure / variable:   Chesler2   distance_light_LD

ID, description, units MPD:43464   distance_light_LD   distance traveled in light compartment, 10 min test   [cm]  
Data set, strains Chesler2   CC diallel w/par   50 strains     sex: both     age: 7-15wks
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  STRAIN COMPARISON PLOT
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Chesler2 - distance traveled in light compartment, 10 min test



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 2174 524 1037 1893 1329 1204 1221 1541
A ♀ — — 2023 — — 1078 — —
B6 ♀ 1489 1428 — — 1865 1020 1472 —
CAST ♀ — — 2234 — — 1555 1913 1130
NOD ♀ — 297 1708 1796 — 1392 1635 —
NZO ♀ 1756 478 — — 1584 — — 1425
PWK ♀ 783 1200 — — 1326 — — —
WSB ♀ 1807 1037 1550 — 1640 1463 1551 744

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ — 1098 1540 1190 869 852 1649 1381
A ♀ — — 1432 399 1202 — 1100 1234
B6 ♀ — 1074 — 2343 1376 898 — —
CAST ♀ 1603 1272 1961 — 2009 1284 1831 1341
NOD ♀ 2038 2157 2291 1665 — 1863 — —
NZO ♀ 1332 — 1626 — 1333 — — —
PWK ♀ — 799 1281 — 1662 — — —
WSB ♀ — 673 1285 1468 1461 1175 — —

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested38 strains39 strains
Mean of the strain means1403   cm 1411   cm
Median of the strain means1468   cm 1341   cm
SD of the strain means± 452 ± 439
Coefficient of variation (CV)0.322 0.311
Min–max range of strain means297   –   2234   cm 399   –   2343   cm
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 52136.3317 52136.3317 0.2741 0.6038
strain 7 5496308.8401 785186.9772 4.1276 0.002
sex:strain 7 1233623.3128 176231.9018 0.9264 0.4981
Residuals 36 6848141.9525 190226.1653


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2174.0 0.0   1   0.0 0.0 2174.0, 2174.0 1.71
129SAF1 f 524.0 316.0   2   223.0 0.603 300.0, 747.0 -1.94
129SAF1 m 1098.0 773.0   3 446.0 0.704 217.0, 1665.0 -0.71
129SB6F1 f 1037.0 593.0   3 342.0 0.572 401.0, 1574.0 -0.81
129SB6F1 m 1540.0 312.0   4 156.0 0.203 1252.0, 1864.0 0.29
129SCASTF1 f 1893.0 283.0   2   200.0 0.149 1693.0, 2093.0 1.09
129SCASTF1 m 1190.0 0.0   1   0.0 0.0 1190.0, 1190.0 -0.5
129SNODF1 f 1329.0 0.0   1   0.0 0.0 1329.0, 1329.0 -0.16
129SNODF1 m 869.0 124.0   2   87.8 0.143 781.0, 957.0 -1.24
129SNZOF1 f 1204.0 0.0   1   0.0 0.0 1204.0, 1204.0 -0.44
129SNZOF1 m 852.0 55.2   2   39.0 0.0648 813.0, 891.0 -1.28
129SPWKF1 f 1221.0 331.0   4 166.0 0.271 907.0, 1528.0 -0.4
129SPWKF1 m 1649.0 0.0   1   0.0 0.0 1649.0, 1649.0 0.54
129SWSBF1 f 1541.0 130.0   4 65.0 0.0844 1444.0, 1723.0 0.31
129SWSBF1 m 1381.0 77.1   2   54.5 0.0558 1326.0, 1435.0 -0.07
AB6F1 f 2023.0 0.0   1   0.0 0.0 2023.0, 2023.0 1.37
AB6F1 m 1432.0 235.0   3 136.0 0.164 1242.0, 1695.0 0.05
ACASTF1 m 399.0 0.0   1   0.0 0.0 399.0, 399.0 -2.31
ANODF1 m 1202.0 482.0   5 216.0 0.401 702.0, 1927.0 -0.48
ANZOF1 f 1078.0 630.0   2   445.0 0.584 633.0, 1523.0 -0.72
APWKF1 m 1100.0 0.0   1   0.0 0.0 1100.0, 1100.0 -0.71
AWSBF1 m 1234.0 0.0   1   0.0 0.0 1234.0, 1234.0 -0.4
B6129SF1/J f 1489.0 430.0   2   304.0 0.289 1185.0, 1793.0 0.19
B6AF1/J f 1428.0 0.0   1   0.0 0.0 1428.0, 1428.0 0.06
B6AF1/J m 1074.0 122.0   2   86.6 0.114 988.0, 1161.0 -0.77
B6CASTF1 m 2343.0 501.0   2   354.0 0.214 1988.0, 2697.0 2.12
B6NODF1 f 1865.0 241.0   2   170.0 0.129 1694.0, 2035.0 1.02
B6NODF1 m 1376.0 0.0   1   0.0 0.0 1376.0, 1376.0 -0.08
B6NZOF1 f 1020.0 622.0   3 359.0 0.61 345.0, 1570.0 -0.85
B6NZOF1 m 898.0 500.0   2   354.0 0.557 545.0, 1252.0 -1.17
B6PWKF1 f 1472.0 309.0   2   218.0 0.21 1254.0, 1690.0 0.15
CAST129SF1 m 1603.0 490.0   3 283.0 0.305 1051.0, 1985.0 0.44
CASTAF1 m 1272.0 329.0   2   233.0 0.259 1039.0, 1504.0 -0.32
CASTB6F1 f 2234.0 0.0   1   0.0 0.0 2234.0, 2234.0 1.84
CASTB6F1 m 1961.0 125.0   3 72.2 0.0638 1817.0, 2047.0 1.25
CASTNODF1 m 2009.0 235.0   3 135.0 0.117 1738.0, 2160.0 1.36
CASTNZOF1 f 1555.0 441.0   3 255.0 0.284 1048.0, 1852.0 0.34
CASTNZOF1 m 1284.0 0.0   1   0.0 0.0 1284.0, 1284.0 -0.29
CASTPWKF1 f 1913.0 99.2   4 49.6 0.0518 1803.0, 2035.0 1.13
CASTPWKF1 m 1831.0 506.0   5 226.0 0.276 1320.0, 2634.0 0.96
CASTWSBF1 f 1130.0 0.0   1   0.0 0.0 1130.0, 1130.0 -0.6
CASTWSBF1 m 1341.0 0.0   1   0.0 0.0 1341.0, 1341.0 -0.16
NOD129SF1 m 2038.0 0.0   1   0.0 0.0 2038.0, 2038.0 1.43
NODAF1 f 297.0 0.0   1   0.0 0.0 297.0, 297.0 -2.45
NODAF1 m 2157.0 0.0   1   0.0 0.0 2157.0, 2157.0 1.7
NODB6F1 f 1708.0 0.0   1   0.0 0.0 1708.0, 1708.0 0.68
NODB6F1 m 2291.0 0.0   1   0.0 0.0 2291.0, 2291.0 2.01
NODCASTF1 f 1796.0 512.0   5 229.0 0.285 931.0, 2289.0 0.87
NODCASTF1 m 1665.0 187.0   2   132.0 0.112 1533.0, 1798.0 0.58
NODNZOF1 f 1392.0 300.0   2   212.0 0.215 1180.0, 1604.0 -0.02
NODNZOF1 m 1863.0 569.0   3 329.0 0.306 1234.0, 2342.0 1.03
NODPWKF1 f 1635.0 0.0   1   0.0 0.0 1635.0, 1635.0 0.51
NZO129SF1 f 1756.0 0.0   1   0.0 0.0 1756.0, 1756.0 0.78
NZO129SF1 m 1332.0 0.0   1   0.0 0.0 1332.0, 1332.0 -0.18
NZOAF1 f 478.0 409.0   3 236.0 0.855 55.5, 871.0 -2.05
NZOB6F1 m 1626.0 0.0   1   0.0 0.0 1626.0, 1626.0 0.49
NZONODF1 f 1584.0 0.0   1   0.0 0.0 1584.0, 1584.0 0.4
NZONODF1 m 1333.0 304.0   2   215.0 0.228 1118.0, 1548.0 -0.18
NZOWSBF1 f 1425.0 218.0   3 126.0 0.153 1258.0, 1672.0 0.05
PWK129SF1 f 783.0 422.0   4 211.0 0.539 318.0, 1300.0 -1.37
PWKAF1 f 1200.0 0.0   1   0.0 0.0 1200.0, 1200.0 -0.45
PWKAF1 m 799.0 92.1   2   65.1 0.115 734.0, 864.0 -1.4
PWKB6F1 m 1281.0 1434.0   2   1014.0 1.12 267.0, 2295.0 -0.3
PWKNODF1 f 1326.0 0.0   1   0.0 0.0 1326.0, 1326.0 -0.17
PWKNODF1 m 1662.0 598.0   2   423.0 0.36 1239.0, 2084.0 0.57
WSB129SF1 f 1807.0 256.0   3 148.0 0.142 1560.0, 2072.0 0.89
WSBAF1 f 1037.0 0.0   1   0.0 0.0 1037.0, 1037.0 -0.81
WSBAF1 m 673.0 818.0   2   578.0 1.22 94.6, 1251.0 -1.68
WSBB6F1 f 1550.0 0.0   1   0.0 0.0 1550.0, 1550.0 0.33
WSBB6F1 m 1285.0 457.0   3 264.0 0.356 830.0, 1745.0 -0.29
WSBCASTF1 m 1468.0 229.0   3 132.0 0.156 1244.0, 1701.0 0.13
WSB/EiJ f 744.0 187.0   2   132.0 0.251 611.0, 876.0 -1.46
WSBNODF1 f 1640.0 0.0   1   0.0 0.0 1640.0, 1640.0 0.53
WSBNODF1 m 1461.0 373.0   2   264.0 0.255 1197.0, 1725.0 0.11
WSBNZOF1 f 1463.0 282.0   6 115.0 0.193 1195.0, 1972.0 0.13
WSBNZOF1 m 1175.0 451.0   2   319.0 0.384 856.0, 1494.0 -0.54
WSBPWKF1 f 1551.0 54.7   2   38.6 0.0352 1513.0, 1590.0 0.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 f 523.515 308.4041 1148.9875 0.0
129SAF1 m 1097.8667 251.8109 1608.5628 587.1705
129SB6F1 f 1037.0567 251.8109 1547.7528 526.3605
129SB6F1 m 1540.2875 218.0746 1982.5633 1098.0117
129SWSBF1 f 1541.295 218.0746 1983.5708 1099.0192
129SWSBF1 m 1380.81 308.4041 2006.2825 755.3375
B6NZOF1 f 1019.5033 251.8109 1530.1995 508.8072
B6NZOF1 m 898.175 308.4041 1523.6475 272.7025
CASTPWKF1 f 1913.42 218.0746 2355.6958 1471.1442
CASTPWKF1 m 1831.418 195.0519 2227.0015 1435.8345
NODCASTF1 f 1795.938 195.0519 2191.5215 1400.3545
NODCASTF1 m 1665.41 308.4041 2290.8825 1039.9375
NODNZOF1 f 1392.395 308.4041 2017.8675 766.9225
NODNZOF1 m 1863.17 251.8109 2373.8661 1352.4739
WSBNZOF1 f 1462.615 178.0572 1823.7317 1101.4983
WSBNZOF1 m 1175.035 308.4041 1800.5075 549.5625


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 both 810.6908 199.074 1214.4316 406.9501
129SB6F1 both 1288.6721 166.5572 1626.4658 950.8783
129SWSBF1 both 1461.0525 188.8582 1844.0746 1078.0304
B6NZOF1 both 958.8392 199.074 1362.5799 555.0984
CASTPWKF1 both 1872.419 146.2889 2169.1066 1575.7314
NODCASTF1 both 1730.674 182.4543 2100.7085 1360.6395
NODNZOF1 both 1627.7825 199.074 2031.5233 1224.0417
WSBNZOF1 both 1318.825 178.0572 1679.9417 957.7083




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA