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Project measure / variable:   Harrill1   lymphohistio_portal_ctrl

ID, description, units MPD:39541   lymphohistio_portal_ctrl   lymphohistiocytic, portal, multifocal infiltrate   [score]  control  
isoniazid study
Data set, strains Harrill1   inbred   34 strains     sex: f     age: 8-10wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Harrill1 - lymphohistiocytic, portal, multifocal infiltrate control



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested34 strains
Mean of the strain means0.346   score
Median of the strain means0.250   score
SD of the strain means± 0.275
Coefficient of variation (CV)0.797
Min–max range of strain means0   –   1.00   score
Mean sample size per strain4.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 33 10.0074 0.3033 1.4907 0.0671
Residuals 102 20.75 0.2034


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   4 0.0 0.0 -1.26
A/J f 0.0 0.0   4 0.0 0.0 -1.26
AKR/J f 0.25 0.5   4 0.25 2.0 -0.35
BALB/cJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 2.38
BTBR T+ Itpr3tf/J f 0.0 0.0   4 0.0 0.0 -1.26
BUB/BnJ f 0.75 0.5   4 0.25 0.667 1.47
C3H/HeJ f 0.25 0.5   4 0.25 2.0 -0.35
C57BL/6J f 0.25 0.5   4 0.25 2.0 -0.35
C57BLKS/J f 0.25 0.5   4 0.25 2.0 -0.35
C57BR/cdJ f 0.25 0.5   4 0.25 2.0 -0.35
C58/J f 0.0 0.0   4 0.0 0.0 -1.26
CBA/J f 0.5 0.577   4 0.289 1.15 0.56
CE/J f 0.25 0.5   4 0.25 2.0 -0.35
DBA/2J f 0.0 0.0   4 0.0 0.0 -1.26
FVB/NJ f 0.25 0.5   4 0.25 2.0 -0.35
I/LnJ f 1.0 0.0   4 0.0 0.0 1.0, 1.0 2.38
KK/HlJ f 0.25 0.5   4 0.25 2.0 -0.35
LG/J f 0.5 0.577   4 0.289 1.15 0.56
LP/J f 0.25 0.5   4 0.25 2.0 -0.35
MA/MyJ f 0.25 0.5   4 0.25 2.0 -0.35
MRL/MpJ f 0.5 0.577   4 0.289 1.15 0.56
NOD/ShiLtJ f 0.0 0.0   4 0.0 0.0 -1.26
NON/ShiLtJ f 0.25 0.5   4 0.25 2.0 -0.35
NOR/LtJ f 0.5 0.577   4 0.289 1.15 0.56
NZW/LacJ f 0.5 0.577   4 0.289 1.15 0.56
P/J f 0.25 0.5   4 0.25 2.0 -0.35
PL/J f 0.25 0.5   4 0.25 2.0 -0.35
PWK/PhJ f 0.5 0.577   4 0.289 1.15 0.56
RIIIS/J f 0.0 0.0   4 0.0 0.0 -1.26
SEA/GnJ f 0.75 0.5   4 0.25 0.667 1.47
SJL/J f 0.75 0.5   4 0.25 0.667 1.47
SM/J f 0.5 0.577   4 0.289 1.15 0.56
SWR/J f 0.5 0.577   4 0.289 1.15 0.56
WSB/EiJ f 0.25 0.5   4 0.25 2.0 -0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.2255 0.4473 -0.4473
A/J f 0.0 0.2255 0.4473 -0.4473
AKR/J f 0.25 0.2255 0.6973 -0.1973
BALB/cJ f 1.0 0.2255 1.4473 0.5527
BTBR T+ Itpr3tf/J f 0.0 0.2255 0.4473 -0.4473
BUB/BnJ f 0.75 0.2255 1.1973 0.3027
C3H/HeJ f 0.25 0.2255 0.6973 -0.1973
C57BL/6J f 0.25 0.2255 0.6973 -0.1973
C57BLKS/J f 0.25 0.2255 0.6973 -0.1973
C57BR/cdJ f 0.25 0.2255 0.6973 -0.1973
C58/J f 0.0 0.2255 0.4473 -0.4473
CBA/J f 0.5 0.2255 0.9473 0.0527
CE/J f 0.25 0.2255 0.6973 -0.1973
DBA/2J f 0.0 0.2255 0.4473 -0.4473
FVB/NJ f 0.25 0.2255 0.6973 -0.1973
I/LnJ f 1.0 0.2255 1.4473 0.5527
KK/HlJ f 0.25 0.2255 0.6973 -0.1973
LG/J f 0.5 0.2255 0.9473 0.0527
LP/J f 0.25 0.2255 0.6973 -0.1973
MA/MyJ f 0.25 0.2255 0.6973 -0.1973
MRL/MpJ f 0.5 0.2255 0.9473 0.0527
NOD/ShiLtJ f 0.0 0.2255 0.4473 -0.4473
NON/ShiLtJ f 0.25 0.2255 0.6973 -0.1973
NOR/LtJ f 0.5 0.2255 0.9473 0.0527
NZW/LacJ f 0.5 0.2255 0.9473 0.0527
P/J f 0.25 0.2255 0.6973 -0.1973
PL/J f 0.25 0.2255 0.6973 -0.1973
PWK/PhJ f 0.5 0.2255 0.9473 0.0527
RIIIS/J f 0.0 0.2255 0.4473 -0.4473
SEA/GnJ f 0.75 0.2255 1.1973 0.3027
SJL/J f 0.75 0.2255 1.1973 0.3027
SM/J f 0.5 0.2255 0.9473 0.0527
SWR/J f 0.5 0.2255 0.9473 0.0527
WSB/EiJ f 0.25 0.2255 0.6973 -0.1973




  GWAS USING LINEAR MIXED MODELS